Wall clock time and date at job start Mon Mar 30 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99988 * 2 1 4 4 C 1.53000 * 109.47520 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46870 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31521 * 120.00072 * 359.71988 * 16 14 13 18 18 Si 1.86807 * 120.00293 * 179.72747 * 16 14 13 19 19 H 1.48499 * 109.46814 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47322 * 119.99684 * 18 16 14 21 21 H 1.48500 * 109.47021 * 239.99886 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 1.08997 * 109.47135 * 60.00414 * 1 2 3 25 25 H 1.09005 * 109.46426 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47167 * 299.99589 * 1 2 3 27 27 H 1.09003 * 109.46823 * 60.00139 * 3 2 1 28 28 H 1.08995 * 109.47023 * 300.00178 * 3 2 1 29 29 H 1.09003 * 109.46615 * 60.00432 * 4 3 2 30 30 H 1.08995 * 109.47461 * 300.00330 * 4 3 2 31 31 H 1.09003 * 109.46894 * 60.00804 * 5 4 3 32 32 H 1.08999 * 109.47633 * 300.00097 * 5 4 3 33 33 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 34 34 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 37 37 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 38 38 H 0.97000 * 119.99850 * 179.97438 * 17 16 14 39 39 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 40 40 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6599 2.4636 0.0000 7 8 6.1816 1.3687 0.0000 8 7 6.4238 3.5740 0.0000 9 6 7.8145 3.4665 -0.1113 10 6 8.3750 2.4471 -0.8698 11 6 9.7481 2.3434 -0.9773 12 6 10.5645 3.2529 -0.3303 13 6 12.0622 3.1364 -0.4493 14 6 12.5356 3.9363 -1.6355 15 1 11.8232 4.4755 -2.2423 16 6 13.8776 3.9756 -1.9492 17 7 14.7452 3.3195 -1.2100 18 14 14.4636 4.9610 -3.4241 19 1 13.2988 5.6019 -4.0856 20 1 15.4154 6.0080 -2.9734 21 1 15.1424 4.0559 -4.3860 22 6 10.0095 4.2657 0.4303 23 6 8.6370 4.3780 0.5375 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6438 -0.8892 30 1 3.8568 0.6440 0.8908 31 1 3.8357 3.1239 0.8896 32 1 3.8363 3.1229 -0.8904 33 1 6.0096 4.4477 0.0774 34 1 7.7381 1.7362 -1.3750 35 1 10.1847 1.5506 -1.5666 36 1 12.3356 2.0900 -0.5842 37 1 12.5297 3.5200 0.4576 38 1 15.6893 3.3469 -1.4309 39 1 10.6498 4.9720 0.9377 40 1 8.2041 5.1717 1.1283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928406822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:24 Heat of formation + Delta-G solvation = -74.888348 kcal Electronic energy + Delta-G solvation = -20062.552301 eV Core-core repulsion = 16841.686557 eV Total energy + Delta-G solvation = -3220.865744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36658 -38.46732 -38.03176 -34.93196 -33.94014 -32.98772 -30.57068 -30.29027 -28.38441 -26.74521 -25.76128 -23.39855 -22.42335 -22.07043 -20.57135 -19.95529 -17.67974 -16.97665 -16.70646 -16.52276 -16.28830 -15.61849 -15.20017 -14.96642 -14.40477 -14.22141 -14.07334 -13.68412 -13.05885 -12.82605 -12.69619 -12.43498 -12.39985 -12.04861 -11.98648 -11.38317 -11.37296 -11.27631 -11.22896 -10.82450 -10.58685 -10.36343 -10.06035 -10.03759 -9.83625 -9.42035 -9.24031 -8.41615 -8.28421 -7.37466 -6.02563 -4.06598 1.85030 2.06486 2.71008 2.97336 3.29977 3.37558 3.42452 3.51234 4.37673 4.44135 4.56851 4.61001 4.71756 4.90103 4.91846 5.02647 5.04044 5.10690 5.22667 5.30084 5.31411 5.43747 5.57807 5.78780 5.93373 5.97964 6.06900 6.12492 6.20783 6.64929 6.77389 6.79243 6.91306 7.17302 7.21610 7.49731 7.53657 7.71805 7.87999 7.93344 8.17650 8.33880 8.99015 9.57098 11.07028 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044470 B = 0.002515 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.483252 B =11129.356366 C =11234.472296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.106 4.106 5 C -0.136 4.136 6 C 0.507 3.493 7 O -0.518 6.518 8 N -0.670 5.670 9 C 0.104 3.896 10 C -0.117 4.117 11 C -0.108 4.108 12 C -0.042 4.042 13 C 0.047 3.953 14 C -0.510 4.510 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.108 4.108 23 C -0.144 4.144 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.405 0.595 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.122 0.878 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.376 0.715 3.425 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.144 4.144 5 C -0.176 4.176 6 C 0.295 3.705 7 O -0.393 6.393 8 N -0.315 5.315 9 C 0.011 3.989 10 C -0.137 4.137 11 C -0.126 4.126 12 C -0.043 4.043 13 C 0.010 3.990 14 C -0.548 4.548 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.127 4.127 23 C -0.164 4.164 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.240 0.760 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -25.761 -0.299 3.426 25.990 hybrid contribution -0.035 1.336 -0.755 1.535 sum -25.796 1.037 2.672 25.954 Atomic orbital electron populations 1.22747 0.80990 1.02862 0.99914 1.87904 1.19701 1.27961 1.95399 1.22547 0.94080 0.84762 1.00136 1.21230 0.92107 0.95757 1.05279 1.21534 0.91747 0.99599 1.04697 1.20671 0.89409 0.84277 0.76190 1.90755 1.74744 1.26433 1.47398 1.43436 1.05497 1.09472 1.73092 1.17523 0.81490 0.99405 1.00450 1.20982 0.95358 0.98484 0.98877 1.21004 0.92147 0.99695 0.99796 1.20718 0.99024 0.92185 0.92371 1.18360 0.84654 0.98173 0.97801 1.21105 0.92218 1.29900 1.11589 0.92410 1.25026 0.96835 0.95748 0.96837 1.69974 1.02252 1.42215 1.38859 0.86483 0.78743 0.79881 0.82628 1.19690 1.20971 1.20955 1.20892 0.93313 0.98649 0.99854 1.20740 0.93841 1.00464 1.01360 0.94065 0.89568 0.94091 0.93252 0.93215 0.90078 0.90099 0.88624 0.88488 0.76009 0.85893 0.86067 0.95257 0.95292 0.92912 0.86005 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.78 10.70 -35.23 -0.38 -4.16 16 3 C 0.06 0.46 5.94 37.16 0.22 0.68 16 4 C -0.11 -0.96 4.87 -26.73 -0.13 -1.09 16 5 C -0.14 -1.02 5.70 -27.88 -0.16 -1.17 16 6 C 0.51 6.30 7.57 -10.98 -0.08 6.22 16 7 O -0.52 -8.80 13.67 5.55 0.08 -8.72 16 8 N -0.67 -8.09 5.34 -9.86 -0.05 -8.14 16 9 C 0.10 1.70 6.28 -83.70 -0.53 1.18 16 10 C -0.12 -2.19 8.66 -39.39 -0.34 -2.53 16 11 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16 12 C -0.04 -0.94 5.07 -104.59 -0.53 -1.47 16 13 C 0.05 1.22 5.10 -29.04 -0.15 1.08 16 14 C -0.51 -14.36 9.09 -34.44 -0.31 -14.67 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.11 -2.11 9.69 -39.61 -0.38 -2.49 16 23 C -0.14 -2.35 9.96 -39.39 -0.39 -2.74 16 24 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.41 3.28 8.82 -40.82 -0.36 2.92 16 34 H 0.12 2.27 6.42 -52.49 -0.34 1.94 16 35 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 36 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 40 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -33.88 342.77 -7.77 -41.65 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.15 Total: 0.28 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.16 Total: -16.82 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.68 Total: -33.99 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.30 Total: -12.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.88 -7.77 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.235 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds