Wall clock time and date at job start Mon Mar 30 2020 02:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99988 * 2 1 4 4 C 1.53000 * 109.47520 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46870 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31521 * 120.00072 * 359.71988 * 16 14 13 18 18 Si 1.86807 * 120.00293 * 179.72747 * 16 14 13 19 19 H 1.48499 * 109.46814 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47322 * 119.99684 * 18 16 14 21 21 H 1.48500 * 109.47021 * 239.99886 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 1.08997 * 109.47135 * 60.00414 * 1 2 3 25 25 H 1.09005 * 109.46426 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47167 * 299.99589 * 1 2 3 27 27 H 1.09003 * 109.46823 * 60.00139 * 3 2 1 28 28 H 1.08995 * 109.47023 * 300.00178 * 3 2 1 29 29 H 1.09003 * 109.46615 * 60.00432 * 4 3 2 30 30 H 1.08995 * 109.47461 * 300.00330 * 4 3 2 31 31 H 1.09003 * 109.46894 * 60.00804 * 5 4 3 32 32 H 1.08999 * 109.47633 * 300.00097 * 5 4 3 33 33 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 34 34 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 37 37 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 38 38 H 0.97000 * 119.99850 * 179.97438 * 17 16 14 39 39 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 40 40 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6599 2.4636 0.0000 7 8 6.1816 1.3687 0.0000 8 7 6.4238 3.5740 0.0000 9 6 7.8145 3.4665 -0.1113 10 6 8.3750 2.4471 -0.8698 11 6 9.7481 2.3434 -0.9773 12 6 10.5645 3.2529 -0.3303 13 6 12.0622 3.1364 -0.4493 14 6 12.5356 3.9363 -1.6355 15 1 11.8232 4.4755 -2.2423 16 6 13.8776 3.9756 -1.9492 17 7 14.7452 3.3195 -1.2100 18 14 14.4636 4.9610 -3.4241 19 1 13.2988 5.6019 -4.0856 20 1 15.4154 6.0080 -2.9734 21 1 15.1424 4.0559 -4.3860 22 6 10.0095 4.2657 0.4303 23 6 8.6370 4.3780 0.5375 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6438 -0.8892 30 1 3.8568 0.6440 0.8908 31 1 3.8357 3.1239 0.8896 32 1 3.8363 3.1229 -0.8904 33 1 6.0096 4.4477 0.0774 34 1 7.7381 1.7362 -1.3750 35 1 10.1847 1.5506 -1.5666 36 1 12.3356 2.0900 -0.5842 37 1 12.5297 3.5200 0.4576 38 1 15.6893 3.3469 -1.4309 39 1 10.6498 4.9720 0.9377 40 1 8.2041 5.1717 1.1283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928406822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:23 Heat of formation + Delta-G solvation = -97.234343 kcal Electronic energy + Delta-G solvation = -20063.521296 eV Core-core repulsion = 16841.686557 eV Total energy + Delta-G solvation = -3221.834739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.50977 -39.67094 -38.81579 -36.30718 -34.99122 -34.63261 -32.24820 -31.78071 -29.31592 -28.09182 -26.59797 -25.07625 -23.87608 -23.04894 -21.88453 -21.13996 -18.76020 -18.49692 -18.06331 -17.34341 -17.16859 -16.81689 -16.47159 -15.96340 -15.85080 -15.56430 -15.17543 -14.66947 -14.52044 -14.44361 -14.24375 -13.67925 -13.31293 -13.25340 -13.00888 -12.93487 -12.63499 -12.59986 -12.45401 -12.03177 -11.95270 -11.86418 -11.64741 -11.53521 -11.09844 -10.76516 -10.61175 -10.58097 -9.77332 -8.86510 -8.18579 -6.33548 0.43596 0.56172 1.39396 1.40122 1.53681 1.65732 2.05503 2.39926 2.92077 3.00319 3.10446 3.65895 4.00950 4.04907 4.13367 4.17200 4.34838 4.37820 4.49934 4.53662 4.54595 4.60503 4.62350 4.65464 4.69697 4.81062 4.88543 5.10819 5.13212 5.26647 5.32107 5.33854 5.42018 5.50065 5.60728 5.75333 6.07542 6.12062 6.24968 6.28923 6.51901 6.79403 7.22160 7.34971 8.89579 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044470 B = 0.002515 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.483252 B =11129.356366 C =11234.472296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.062 3.938 4 C -0.106 4.106 5 C -0.120 4.120 6 C 0.503 3.497 7 O -0.570 6.570 8 N -0.656 5.656 9 C 0.119 3.881 10 C -0.126 4.126 11 C -0.122 4.122 12 C -0.077 4.077 13 C 0.056 3.944 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.278 1.278 22 C -0.114 4.114 23 C -0.128 4.128 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.430 0.570 34 H 0.122 0.878 35 H 0.108 0.892 36 H -0.002 1.002 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.528 3.372 3.300 29.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.014 4.014 4 C -0.144 4.144 5 C -0.159 4.159 6 C 0.293 3.707 7 O -0.448 6.448 8 N -0.303 5.303 9 C 0.025 3.975 10 C -0.146 4.146 11 C -0.141 4.141 12 C -0.077 4.077 13 C 0.019 3.981 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.204 1.204 22 C -0.133 4.133 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.269 0.731 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.016 0.984 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -28.964 2.395 3.309 29.251 hybrid contribution 0.816 0.447 -0.658 1.140 sum -28.148 2.842 2.651 28.415 Atomic orbital electron populations 1.22912 0.79355 1.03627 1.01106 1.87856 1.21652 1.29521 1.95688 1.22605 0.92418 0.84338 1.02018 1.21187 0.93866 0.96461 1.02875 1.21553 0.87196 0.99132 1.08048 1.21658 0.91444 0.83269 0.74327 1.90754 1.76023 1.28532 1.49519 1.43386 1.03462 1.11024 1.72428 1.17623 0.83910 0.97720 0.98203 1.20993 0.94234 0.99584 0.99765 1.20918 0.93291 0.99544 1.00333 1.20409 0.96706 0.94903 0.95725 1.18098 0.87864 0.95769 0.96337 1.21412 0.92636 1.30104 1.12243 0.92584 1.25980 0.96944 0.96806 0.99955 1.70100 1.02704 1.43594 1.40744 0.85348 0.78374 0.78360 0.78668 1.18782 1.19956 1.20393 1.21005 0.95165 0.97798 0.99295 1.21064 0.92230 1.01006 1.00476 0.92875 0.89218 0.92797 0.91161 0.91315 0.92680 0.92534 0.84852 0.85117 0.73053 0.86036 0.87411 0.98391 0.97460 0.92588 0.85536 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.43 -7.71 10.70 -148.98 -1.59 -9.30 16 3 C 0.06 0.76 5.94 71.98 0.43 1.19 16 4 C -0.11 -1.76 4.87 30.59 0.15 -1.61 16 5 C -0.12 -1.31 5.70 29.85 0.17 -1.14 16 6 C 0.50 11.19 7.57 87.66 0.66 11.86 16 7 O -0.57 -19.14 13.67 -3.04 -0.04 -19.18 16 8 N -0.66 -13.38 5.34 -303.51 -1.62 -15.00 16 9 C 0.12 3.65 6.28 38.15 0.24 3.89 16 10 C -0.13 -4.72 8.66 22.39 0.19 -4.53 16 11 C -0.12 -5.31 9.69 22.25 0.22 -5.10 16 12 C -0.08 -3.55 5.07 -19.84 -0.10 -3.65 16 13 C 0.06 3.12 5.10 29.10 0.15 3.27 16 14 C -0.53 -30.67 9.09 25.60 0.23 -30.44 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.06 5.46 84.65 0.46 0.52 16 17 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 18 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.11 -4.38 9.69 22.25 0.22 -4.16 16 23 C -0.13 -3.80 9.96 22.39 0.22 -3.58 16 24 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 30 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.43 4.60 8.82 -92.71 -0.82 3.79 16 34 H 0.12 4.58 6.42 -2.91 -0.02 4.56 16 35 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 36 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 37 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 40 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -78.58 342.77 3.75 -74.83 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.21 Total: 10.60 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 4.49 Total: -31.96 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.34 Total: -71.86 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.64 Total: -28.48 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -78.58 3.75 -74.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.402 kcal (2) G-P(sol) polarization free energy of solvation -78.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds