Wall clock time and date at job start Mon Mar 30 2020 01:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47200 * 2 1 4 4 C 1.42900 * 114.00099 * 179.97438 * 3 2 1 5 5 H 1.09011 * 109.47195 * 29.99925 * 4 3 2 6 6 C 1.52996 * 109.47220 * 270.00440 * 4 3 2 7 7 C 1.50699 * 109.47090 * 149.99968 * 4 3 2 8 8 O 1.21287 * 120.00159 * 5.00125 * 7 4 3 9 9 N 1.34779 * 119.99916 * 185.00200 * 7 4 3 10 10 C 1.39923 * 120.00268 * 175.37976 * 9 7 4 11 11 C 1.38861 * 120.07339 * 214.80780 * 10 9 7 12 12 C 1.38117 * 119.93018 * 179.74463 * 11 10 9 13 13 C 1.38282 * 120.06709 * 0.53647 * 12 11 10 14 14 C 1.50701 * 119.92872 * 179.71791 * 13 12 11 15 15 C 1.50703 * 109.47340 * 270.01913 * 14 13 12 16 16 H 1.07994 * 119.99970 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99958 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00119 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99842 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47653 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47121 * 120.00484 * 19 17 15 22 22 H 1.48503 * 109.47327 * 240.00265 * 19 17 15 23 23 C 1.38283 * 120.14090 * 359.73822 * 13 12 11 24 24 C 1.38104 * 120.07173 * 359.97438 * 23 13 12 25 25 H 1.08997 * 109.47072 * 299.99764 * 1 2 3 26 26 H 1.09002 * 109.46987 * 59.99900 * 1 2 3 27 27 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47162 * 239.99726 * 2 1 3 29 29 H 1.09002 * 109.46987 * 120.00100 * 2 1 3 30 30 H 1.08995 * 109.47531 * 59.99662 * 6 4 3 31 31 H 1.09006 * 109.47113 * 179.97438 * 6 4 3 32 32 H 1.09010 * 109.46846 * 299.99342 * 6 4 3 33 33 H 0.96999 * 120.00142 * 355.38453 * 9 7 4 34 34 H 1.07999 * 120.04019 * 0.02813 * 11 10 9 35 35 H 1.07998 * 119.96821 * 180.27363 * 12 11 10 36 36 H 1.08997 * 109.46941 * 30.02594 * 14 13 12 37 37 H 1.09008 * 109.47080 * 150.01838 * 14 13 12 38 38 H 0.97003 * 120.00082 * 179.97438 * 18 17 15 39 39 H 1.08006 * 119.96201 * 180.02562 * 23 13 12 40 40 H 1.08003 * 120.03965 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9387 1.5005 1.4432 7 6 3.8348 2.7263 -0.7098 8 8 2.9864 3.5046 -1.0913 9 7 5.1387 2.9937 -0.9213 10 6 5.5105 4.1193 -1.6648 11 6 6.6298 4.0727 -2.4853 12 6 6.9910 5.1838 -3.2219 13 6 6.2457 6.3453 -3.1344 14 6 6.6464 7.5578 -3.9347 15 6 7.5950 8.4034 -3.1246 16 1 7.8796 8.0936 -2.1300 17 6 8.1003 9.5720 -3.6537 18 7 7.7540 9.9490 -4.8652 19 14 9.2766 10.6197 -2.6499 20 1 9.5055 9.9803 -1.3294 21 1 10.5692 10.7418 -3.3709 22 1 8.6910 11.9699 -2.4517 23 6 5.1338 6.3967 -2.3139 24 6 4.7640 5.2872 -1.5793 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.6466 0.5847 1.9571 31 1 5.0254 1.5861 1.4437 32 1 3.5060 2.3592 1.9568 33 1 5.8195 2.4058 -0.5582 34 1 7.2146 3.1671 -2.5510 35 1 7.8589 5.1468 -3.8636 36 1 7.1376 7.2400 -4.8543 37 1 5.7586 8.1409 -4.1798 38 1 8.1093 10.7714 -5.2373 39 1 4.5536 7.3052 -2.2481 40 1 3.8957 5.3281 -0.9383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928406878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:27 Heat of formation + Delta-G solvation = -67.469984 kcal Electronic energy + Delta-G solvation = -20599.022416 eV Core-core repulsion = 17378.478356 eV Total energy + Delta-G solvation = -3220.544060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.50888 -38.71191 -37.61809 -34.88898 -33.21754 -32.61051 -30.79196 -30.28367 -29.98003 -26.75734 -24.82054 -23.28132 -22.82412 -22.35073 -20.75407 -19.94387 -17.94491 -17.35248 -16.57253 -16.28806 -15.99765 -15.38624 -14.89834 -14.78807 -14.24585 -14.07769 -13.59704 -13.44008 -13.04762 -12.89040 -12.82626 -12.57224 -12.51795 -12.30779 -11.99343 -11.71954 -11.46090 -11.32258 -11.25398 -10.82422 -10.57928 -10.37030 -10.17568 -9.93510 -9.68800 -9.33716 -9.23434 -8.41213 -8.27305 -7.39338 -6.02223 -4.06184 1.85345 2.07702 2.61334 2.72803 3.30393 3.37982 3.42959 3.62852 4.35657 4.40551 4.52017 4.56489 4.64972 4.74835 4.87724 4.99827 5.08636 5.29347 5.31847 5.38970 5.43757 5.57192 5.60057 5.71837 5.82220 5.94791 6.06130 6.13134 6.21285 6.66545 6.68838 6.85097 6.92848 7.17726 7.22661 7.49407 7.53577 7.72473 7.88412 7.93733 8.16792 8.34204 8.99432 9.57505 11.07431 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041037 B = 0.002927 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.145314 B = 9562.934495 C = 9690.693728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.074 3.926 5 H 0.087 0.913 6 C -0.172 4.172 7 C 0.508 3.492 8 O -0.499 6.499 9 N -0.666 5.666 10 C 0.102 3.898 11 C -0.142 4.142 12 C -0.109 4.109 13 C -0.041 4.041 14 C 0.047 3.953 15 C -0.509 4.509 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.109 4.109 24 C -0.117 4.117 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.404 0.596 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.122 0.878 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 -21.984 10.863 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.012 3.988 5 H 0.105 0.895 6 C -0.229 4.229 7 C 0.293 3.707 8 O -0.371 6.371 9 N -0.313 5.313 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.128 4.128 13 C -0.041 4.041 14 C 0.010 3.990 15 C -0.548 4.548 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.128 4.128 24 C -0.136 4.136 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.211 -21.169 10.472 25.004 hybrid contribution 1.252 0.044 0.675 1.423 sum -6.959 -21.124 11.147 24.878 Atomic orbital electron populations 1.21732 0.93340 1.02217 1.03568 1.22601 0.96077 0.83471 1.00050 1.88075 1.18164 1.26358 1.94909 1.21841 0.84002 0.96243 0.96674 0.89544 1.22254 1.01710 1.03954 0.95019 1.20460 0.82469 0.87825 0.79906 1.90742 1.50030 1.47926 1.48446 1.43269 1.07201 1.27002 1.53796 1.17511 0.97924 0.86499 0.97108 1.20738 0.98048 0.99211 0.98224 1.20883 0.99928 0.92294 0.99695 1.20728 0.92159 0.96061 0.95179 1.18366 0.97081 0.89123 0.94427 1.21102 1.26515 1.05859 1.01293 0.92409 1.25023 0.96725 0.97640 0.95055 1.69974 1.44499 1.23627 1.15228 0.86483 0.80699 0.80237 0.80315 1.19687 1.20978 1.20949 1.21028 0.97356 0.97551 0.96831 1.21141 1.00323 0.91271 1.00908 0.91700 0.91542 0.91012 0.93200 0.93205 0.91131 0.90856 0.90823 0.76063 0.86804 0.85980 0.95296 0.95264 0.92913 0.86047 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.05 0.43 6.47 37.16 0.24 0.67 16 3 O -0.36 -4.19 9.53 -55.09 -0.52 -4.72 16 4 C 0.07 0.72 3.13 -27.89 -0.09 0.63 16 5 H 0.09 0.60 7.79 -51.92 -0.40 0.19 16 6 C -0.17 -1.24 9.47 37.16 0.35 -0.89 16 7 C 0.51 7.02 7.02 -10.98 -0.08 6.94 16 8 O -0.50 -9.30 13.94 -14.31 -0.20 -9.50 16 9 N -0.67 -8.38 5.30 -9.86 -0.05 -8.43 16 10 C 0.10 1.69 6.30 -83.70 -0.53 1.17 16 11 C -0.14 -2.32 9.97 -39.40 -0.39 -2.71 16 12 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 13 C -0.04 -0.90 5.07 -104.59 -0.53 -1.44 16 14 C 0.05 1.22 5.10 -29.03 -0.15 1.07 16 15 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.11 -2.28 9.69 -39.61 -0.38 -2.66 16 24 C -0.12 -2.22 8.70 -39.39 -0.34 -2.57 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.05 0.29 7.87 -51.93 -0.41 -0.11 16 30 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 31 H 0.07 0.40 7.78 -51.93 -0.40 -0.01 16 32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.40 3.42 8.45 -40.82 -0.34 3.08 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.80 8.08 -51.92 -0.42 0.38 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 40 H 0.13 2.46 6.23 -52.48 -0.33 2.14 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -34.04 341.39 -8.28 -42.33 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.06 Total: 0.56 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.31 Total: -16.13 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.68 Total: -34.31 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.72 Total: -14.22 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.04 -8.28 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.143 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds