Wall clock time and date at job start Mon Mar 30 2020 01:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47200 * 2 1 4 4 C 1.42900 * 114.00099 * 179.97438 * 3 2 1 5 5 H 1.09011 * 109.47195 * 29.99925 * 4 3 2 6 6 C 1.52996 * 109.47220 * 270.00440 * 4 3 2 7 7 C 1.50699 * 109.47090 * 149.99968 * 4 3 2 8 8 O 1.21287 * 120.00159 * 5.00125 * 7 4 3 9 9 N 1.34779 * 119.99916 * 185.00200 * 7 4 3 10 10 C 1.39923 * 120.00268 * 175.37976 * 9 7 4 11 11 C 1.38861 * 120.07339 * 214.80780 * 10 9 7 12 12 C 1.38117 * 119.93018 * 179.74463 * 11 10 9 13 13 C 1.38282 * 120.06709 * 0.53647 * 12 11 10 14 14 C 1.50701 * 119.92872 * 179.71791 * 13 12 11 15 15 C 1.50703 * 109.47340 * 270.01913 * 14 13 12 16 16 H 1.07994 * 119.99970 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99958 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00119 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99842 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47653 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47121 * 120.00484 * 19 17 15 22 22 H 1.48503 * 109.47327 * 240.00265 * 19 17 15 23 23 C 1.38283 * 120.14090 * 359.73822 * 13 12 11 24 24 C 1.38104 * 120.07173 * 359.97438 * 23 13 12 25 25 H 1.08997 * 109.47072 * 299.99764 * 1 2 3 26 26 H 1.09002 * 109.46987 * 59.99900 * 1 2 3 27 27 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47162 * 239.99726 * 2 1 3 29 29 H 1.09002 * 109.46987 * 120.00100 * 2 1 3 30 30 H 1.08995 * 109.47531 * 59.99662 * 6 4 3 31 31 H 1.09006 * 109.47113 * 179.97438 * 6 4 3 32 32 H 1.09010 * 109.46846 * 299.99342 * 6 4 3 33 33 H 0.96999 * 120.00142 * 355.38453 * 9 7 4 34 34 H 1.07999 * 120.04019 * 0.02813 * 11 10 9 35 35 H 1.07998 * 119.96821 * 180.27363 * 12 11 10 36 36 H 1.08997 * 109.46941 * 30.02594 * 14 13 12 37 37 H 1.09008 * 109.47080 * 150.01838 * 14 13 12 38 38 H 0.97003 * 120.00082 * 179.97438 * 18 17 15 39 39 H 1.08006 * 119.96201 * 180.02562 * 23 13 12 40 40 H 1.08003 * 120.03965 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9387 1.5005 1.4432 7 6 3.8348 2.7263 -0.7098 8 8 2.9864 3.5046 -1.0913 9 7 5.1387 2.9937 -0.9213 10 6 5.5105 4.1193 -1.6648 11 6 6.6298 4.0727 -2.4853 12 6 6.9910 5.1838 -3.2219 13 6 6.2457 6.3453 -3.1344 14 6 6.6464 7.5578 -3.9347 15 6 7.5950 8.4034 -3.1246 16 1 7.8796 8.0936 -2.1300 17 6 8.1003 9.5720 -3.6537 18 7 7.7540 9.9490 -4.8652 19 14 9.2766 10.6197 -2.6499 20 1 9.5055 9.9803 -1.3294 21 1 10.5692 10.7418 -3.3709 22 1 8.6910 11.9699 -2.4517 23 6 5.1338 6.3967 -2.3139 24 6 4.7640 5.2872 -1.5793 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.6466 0.5847 1.9571 31 1 5.0254 1.5861 1.4437 32 1 3.5060 2.3592 1.9568 33 1 5.8195 2.4058 -0.5582 34 1 7.2146 3.1671 -2.5510 35 1 7.8589 5.1468 -3.8636 36 1 7.1376 7.2400 -4.8543 37 1 5.7586 8.1409 -4.1798 38 1 8.1093 10.7714 -5.2373 39 1 4.5536 7.3052 -2.2481 40 1 3.8957 5.3281 -0.9383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928406878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:26 Heat of formation + Delta-G solvation = -88.827842 kcal Electronic energy + Delta-G solvation = -20599.948562 eV Core-core repulsion = 17378.478356 eV Total energy + Delta-G solvation = -3221.470206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.65978 -39.90264 -38.67358 -36.29861 -35.04399 -33.53847 -32.14169 -31.78441 -30.95258 -28.47502 -25.94141 -24.74770 -23.85211 -23.58714 -22.16581 -21.22131 -19.05918 -18.50658 -18.25038 -17.54375 -16.94002 -16.66129 -16.35293 -15.94401 -15.84369 -15.36770 -14.65093 -14.54471 -14.34206 -14.22863 -14.13666 -13.68645 -13.38421 -13.29351 -13.19609 -13.16737 -12.88210 -12.64067 -12.45701 -12.30006 -12.10163 -11.97104 -11.63343 -11.52731 -11.09600 -10.86394 -10.61140 -10.46420 -9.77482 -8.91316 -8.18667 -6.33270 0.41260 0.55813 1.39607 1.40339 1.51831 1.54486 1.75137 2.40108 2.88745 2.98196 3.10749 3.54835 3.88541 4.00640 4.06316 4.14623 4.20547 4.32756 4.37551 4.49805 4.58827 4.60676 4.65046 4.71826 4.79177 4.89072 5.02368 5.11586 5.20867 5.27269 5.31013 5.33350 5.41305 5.46614 5.59286 5.75379 6.06268 6.09366 6.13784 6.24863 6.47911 6.79642 7.13182 7.35244 8.89811 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041037 B = 0.002927 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.145314 B = 9562.934495 C = 9690.693728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.079 3.921 5 H 0.125 0.875 6 C -0.167 4.167 7 C 0.503 3.497 8 O -0.555 6.555 9 N -0.649 5.649 10 C 0.116 3.884 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.073 4.073 14 C 0.056 3.944 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.968 3.032 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.278 1.278 23 C -0.123 4.123 24 C -0.126 4.126 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.430 0.570 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.008 0.992 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.107 0.893 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 -25.175 12.865 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.315 6.315 4 C 0.018 3.982 5 H 0.142 0.858 6 C -0.224 4.224 7 C 0.291 3.709 8 O -0.431 6.431 9 N -0.297 5.297 10 C 0.023 3.977 11 C -0.143 4.143 12 C -0.132 4.132 13 C -0.073 4.073 14 C 0.019 3.981 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.204 1.204 23 C -0.142 4.142 24 C -0.146 4.146 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.269 0.731 34 H 0.182 0.818 35 H 0.147 0.853 36 H 0.026 0.974 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.649 -24.413 12.503 28.222 hybrid contribution 0.676 0.918 0.063 1.142 sum -5.974 -23.494 12.566 27.305 Atomic orbital electron populations 1.21784 0.93505 1.03455 1.02286 1.22842 0.96096 0.82080 1.01772 1.88043 1.19400 1.28856 1.95168 1.21978 0.83633 0.94651 0.97913 0.85798 1.22273 1.02952 1.04201 0.93024 1.21442 0.81952 0.88679 0.78835 1.90729 1.51580 1.50071 1.50733 1.43166 1.07883 1.25846 1.52829 1.17602 0.96950 0.86771 0.96414 1.21067 0.97572 0.99661 0.95951 1.21010 0.99734 0.92210 1.00285 1.20418 0.94148 0.96013 0.96752 1.18105 0.95234 0.90564 0.94169 1.21404 1.26953 1.06609 1.01367 0.92603 1.25968 0.98505 0.98985 0.96180 1.70098 1.45789 1.24315 1.16964 0.85354 0.78386 0.78181 0.78871 1.18806 1.19926 1.20419 1.20925 0.97377 0.98102 0.97781 1.21123 1.00706 0.91900 1.00904 0.92409 0.93414 0.88498 0.92067 0.90679 0.88766 0.88525 0.93055 0.73059 0.81813 0.85308 0.97353 0.98425 0.92580 0.87455 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.62 6.47 71.98 0.47 1.09 16 3 O -0.40 -8.60 9.53 -129.99 -1.24 -9.84 16 4 C 0.08 1.28 3.13 29.85 0.09 1.38 16 5 H 0.12 1.08 7.79 -2.38 -0.02 1.07 16 6 C -0.17 -1.79 9.47 71.98 0.68 -1.11 16 7 C 0.50 12.90 7.02 87.66 0.62 13.52 16 8 O -0.55 -20.75 13.94 15.94 0.22 -20.52 16 9 N -0.65 -14.17 5.30 -303.51 -1.61 -15.78 16 10 C 0.12 3.63 6.30 38.15 0.24 3.87 16 11 C -0.12 -3.62 9.97 22.39 0.22 -3.40 16 12 C -0.11 -4.33 9.69 22.25 0.22 -4.11 16 13 C -0.07 -3.35 5.07 -19.84 -0.10 -3.45 16 14 C 0.06 3.11 5.10 29.10 0.15 3.26 16 15 C -0.53 -30.59 9.09 25.60 0.23 -30.36 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 19 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 C -0.12 -5.41 9.69 22.25 0.22 -5.19 16 24 C -0.13 -4.88 8.70 22.39 0.19 -4.69 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.64 8.09 -2.39 -0.02 0.62 16 29 H 0.08 0.59 7.87 -2.39 -0.02 0.57 16 30 H 0.09 0.60 7.87 -2.39 -0.02 0.58 16 31 H 0.10 0.57 7.78 -2.38 -0.02 0.55 16 32 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.43 5.09 8.45 -92.71 -0.78 4.30 16 34 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 36 H 0.01 0.47 8.08 -2.39 -0.02 0.45 16 37 H 0.00 -0.15 8.08 -2.38 -0.02 -0.17 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 40 H 0.12 4.86 6.23 -2.91 -0.02 4.84 16 Total: -1.00 -78.74 341.39 4.36 -74.38 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.25 Total: 11.61 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 4.43 Total: -29.88 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.32 Total: -72.61 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.02 Total: -30.37 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -78.74 4.36 -74.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.451 kcal (2) G-P(sol) polarization free energy of solvation -78.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds