Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99744 * 2 1 4 4 C 1.38760 * 120.12980 * 359.97438 * 3 2 1 5 5 C 1.37938 * 119.77100 * 180.02562 * 4 3 2 6 6 C 1.38722 * 120.42932 * 359.95433 * 5 4 3 7 7 C 1.37887 * 119.93466 * 359.92825 * 6 5 4 8 8 C 1.38511 * 120.12329 * 179.97438 * 3 2 1 9 9 C 1.50639 * 121.84631 * 180.45244 * 7 6 5 10 10 N 1.46626 * 110.49440 * 342.40011 * 9 7 6 11 11 C 1.46894 * 111.00107 * 289.14847 * 10 9 7 12 12 C 1.52996 * 109.47403 * 293.95708 * 11 10 9 13 13 H 1.08999 * 109.47134 * 59.99296 * 12 11 10 14 14 O 1.42901 * 109.46772 * 299.99947 * 12 11 10 15 15 C 1.50703 * 109.47243 * 180.02562 * 12 11 10 16 16 H 1.07990 * 120.00105 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99804 * 179.97438 * 15 12 11 18 18 N 1.31525 * 119.99996 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 120.00076 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47216 * 60.00040 * 19 17 15 21 21 H 1.48497 * 109.47316 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47313 * 300.00008 * 19 17 15 23 23 C 1.46931 * 110.20588 * 52.53525 * 10 9 7 24 24 C 1.50738 * 118.43199 * 179.85677 * 6 5 4 25 25 H 1.09005 * 109.47174 * 300.00243 * 1 2 3 26 26 H 1.09002 * 109.46937 * 59.99911 * 1 2 3 27 27 H 1.08998 * 109.47065 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.11458 * 0.07101 * 4 3 2 29 29 H 1.07999 * 119.78097 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.83514 * 0.03595 * 8 3 2 31 31 H 1.08997 * 109.27119 * 102.66152 * 9 7 6 32 32 H 1.08993 * 109.26884 * 222.17636 * 9 7 6 33 33 H 1.09009 * 109.47156 * 53.95771 * 11 10 9 34 34 H 1.08999 * 109.47551 * 173.95259 * 11 10 9 35 35 H 0.96707 * 114.00118 * 299.99758 * 14 12 11 36 36 H 0.97002 * 119.99606 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.50043 * 168.98300 * 23 10 9 38 38 H 1.09006 * 109.64453 * 48.47561 * 23 10 9 39 39 H 1.09002 * 109.39027 * 283.27797 * 24 6 5 40 40 H 1.08996 * 109.38746 * 43.07561 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2928 2.3763 -0.0005 5 6 1.9266 3.6014 -0.0011 6 6 3.3118 3.6758 -0.0001 7 6 4.0630 2.5195 0.0029 8 6 3.4290 1.2864 0.0005 9 6 5.5690 2.5500 0.0141 10 7 6.0588 3.8703 -0.3946 11 6 5.8278 4.0971 -1.8274 12 6 6.6820 3.1237 -2.6421 13 1 6.4087 2.0997 -2.3876 14 8 8.0630 3.3365 -2.3428 15 6 6.4454 3.3568 -4.1121 16 1 5.7546 4.1223 -4.4331 17 6 7.1110 2.5928 -5.0471 18 7 7.9519 1.6601 -4.6561 19 14 6.8173 2.8812 -6.8691 20 1 7.1892 4.2765 -7.2157 21 1 7.6465 1.9365 -7.6598 22 1 5.3824 2.6595 -7.1804 23 6 5.4234 4.9199 0.4138 24 6 3.9574 5.0379 -0.0041 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2140 2.3243 0.0002 29 1 1.3406 4.5086 -0.0019 30 1 4.0166 0.3803 0.0004 31 1 5.9258 2.3296 1.0202 32 1 5.9492 1.7965 -0.6756 33 1 4.7743 3.9348 -2.0558 34 1 6.1011 5.1211 -2.0820 35 1 8.3763 4.2288 -2.5446 36 1 8.4204 1.1229 -5.3140 37 1 5.9308 5.8691 0.2416 38 1 5.4831 4.6558 1.4697 39 1 3.8999 5.4628 -1.0062 40 1 3.4331 5.6889 0.6955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929341442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = -56.673280 kcal Electronic energy + Delta-G solvation = -21970.111961 eV Core-core repulsion = 18750.036082 eV Total energy + Delta-G solvation = -3220.075879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49413 -38.94508 -36.48229 -34.92224 -32.43590 -32.02274 -30.65480 -29.23524 -28.33081 -26.91477 -25.34226 -23.83457 -22.38248 -22.11020 -20.84347 -18.87746 -17.56701 -16.93383 -16.29551 -15.76050 -15.46988 -15.09253 -14.71614 -14.51005 -14.43605 -13.96652 -13.69522 -13.40414 -13.30731 -12.92673 -12.44617 -12.35979 -12.18354 -12.00310 -11.71846 -11.28691 -11.07376 -10.92385 -10.85524 -10.78498 -10.69746 -10.48373 -10.34465 -9.99694 -8.92981 -8.60364 -8.49699 -8.06532 -7.90738 -7.64671 -5.95508 -4.13338 1.45315 1.55108 3.28300 3.31635 3.36868 3.38531 3.83823 4.37390 4.56852 4.79587 4.93656 4.95163 5.03009 5.05652 5.25724 5.31987 5.33102 5.36151 5.41661 5.47697 5.75846 5.84816 5.87838 6.01101 6.11622 6.12125 6.18498 6.30594 6.38993 6.43190 6.48672 6.60539 6.78431 6.88362 6.94503 7.46291 7.54899 7.64067 7.82683 7.93345 8.25997 8.90064 9.51594 9.68100 11.08701 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.005456 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.051051 B = 5130.833225 C = 6029.949108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.121 3.879 4 C -0.212 4.212 5 C -0.082 4.082 6 C -0.111 4.111 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.086 3.914 10 N -0.513 5.513 11 C 0.025 3.975 12 C 0.237 3.763 13 H 0.054 0.946 14 O -0.555 6.555 15 C -0.573 4.573 16 H 0.053 0.947 17 C 0.081 3.919 18 N -0.859 5.859 19 Si 0.887 3.113 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.050 3.950 24 C -0.113 4.113 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.035 0.965 34 H 0.062 0.938 35 H 0.342 0.658 36 H 0.260 0.740 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.026 2.525 11.391 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.076 3.924 4 C -0.231 4.231 5 C -0.100 4.100 6 C -0.112 4.112 7 C -0.061 4.061 8 C -0.163 4.163 9 C -0.042 4.042 10 N -0.233 5.233 11 C -0.102 4.102 12 C 0.179 3.821 13 H 0.072 0.928 14 O -0.357 6.357 15 C -0.611 4.611 16 H 0.071 0.929 17 C -0.125 4.125 18 N -0.494 5.494 19 Si 0.715 3.285 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.078 4.078 24 C -0.152 4.152 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.149 0.851 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.185 0.815 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.312 1.569 11.610 16.995 hybrid contribution -1.645 0.799 -1.517 2.376 sum -13.956 2.368 10.093 17.386 Atomic orbital electron populations 1.22999 0.78858 1.03612 1.01121 1.86069 1.21004 1.27167 1.89003 1.18912 0.92319 0.83931 0.97227 1.21067 0.99534 0.92435 1.10071 1.20812 0.93850 0.96847 0.98486 1.19469 0.93120 0.94885 1.03685 1.20389 0.98107 0.91644 0.95952 1.20371 0.91223 0.98383 1.06354 1.21266 0.86821 0.93955 1.02186 1.62643 1.54790 1.00652 1.05238 1.23139 0.99608 1.01589 0.85866 1.19315 0.78685 0.93310 0.90746 0.92849 1.86556 1.27701 1.33667 1.87729 1.21605 1.27187 1.20400 0.91949 0.92918 1.25002 0.94406 0.94445 0.98674 1.70073 1.25541 1.20107 1.33711 0.86767 0.78192 0.78139 0.85442 1.20145 1.21176 1.20297 1.22204 0.91066 0.96591 0.97965 1.21075 0.98009 0.93586 1.02488 0.92958 0.92788 0.88476 0.85903 0.86240 0.85109 0.89759 0.88128 0.94692 0.91949 0.81474 0.92979 0.90498 0.91159 0.90429 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.82 101.05 0.99 1.26 16 2 O -0.32 -4.47 10.50 -19.43 -0.20 -4.67 16 3 C 0.12 1.83 6.68 -39.29 -0.26 1.57 16 4 C -0.21 -2.87 9.04 -39.50 -0.36 -3.22 16 5 C -0.08 -1.12 9.65 -39.51 -0.38 -1.51 16 6 C -0.11 -1.70 5.06 -104.55 -0.53 -2.23 16 7 C -0.06 -0.98 5.20 -104.63 -0.54 -1.52 16 8 C -0.14 -2.35 9.59 -39.33 -0.38 -2.73 16 9 C 0.09 1.50 5.42 -5.16 -0.03 1.47 16 10 N -0.51 -9.28 4.89 -236.40 -1.16 -10.43 16 11 C 0.03 0.53 3.56 -3.83 -0.01 0.51 16 12 C 0.24 6.05 2.72 -27.88 -0.08 5.98 16 13 H 0.05 1.50 6.35 -51.93 -0.33 1.17 16 14 O -0.55 -14.53 12.59 -35.23 -0.44 -14.97 16 15 C -0.57 -15.91 8.76 -34.44 -0.30 -16.21 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.08 2.29 5.40 -17.82 -0.10 2.20 16 18 N -0.86 -25.67 12.84 55.43 0.71 -24.96 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 C 0.05 0.73 6.01 -3.87 -0.02 0.71 16 24 C -0.11 -1.55 5.17 -27.92 -0.14 -1.70 16 25 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 26 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.12 1.32 6.32 -52.49 -0.33 0.99 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.10 2.00 6.03 -51.93 -0.31 1.69 16 33 H 0.03 0.75 5.87 -51.92 -0.30 0.44 16 34 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 35 H 0.34 8.07 9.04 45.56 0.41 8.48 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 39 H 0.08 1.13 7.04 -51.93 -0.37 0.77 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -31.93 320.58 -8.37 -40.30 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.95 Total: 8.90 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.14 Total: -15.42 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.44 Total: -35.40 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.65 Total: -19.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.93 -8.37 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929341442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.373 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds