Wall clock time and date at job start Mon Mar 30 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99744 * 2 1 4 4 C 1.38760 * 120.12980 * 359.97438 * 3 2 1 5 5 C 1.37938 * 119.77100 * 180.02562 * 4 3 2 6 6 C 1.38722 * 120.42932 * 359.95433 * 5 4 3 7 7 C 1.37887 * 119.93466 * 359.92825 * 6 5 4 8 8 C 1.38511 * 120.12329 * 179.97438 * 3 2 1 9 9 C 1.50639 * 121.84631 * 180.45244 * 7 6 5 10 10 N 1.46626 * 110.49440 * 342.40011 * 9 7 6 11 11 C 1.46894 * 111.00107 * 289.14847 * 10 9 7 12 12 C 1.52996 * 109.47403 * 293.95708 * 11 10 9 13 13 H 1.08999 * 109.47134 * 59.99296 * 12 11 10 14 14 O 1.42901 * 109.46772 * 299.99947 * 12 11 10 15 15 C 1.50703 * 109.47243 * 180.02562 * 12 11 10 16 16 H 1.07990 * 120.00105 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99804 * 179.97438 * 15 12 11 18 18 N 1.31525 * 119.99996 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 120.00076 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47216 * 60.00040 * 19 17 15 21 21 H 1.48497 * 109.47316 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47313 * 300.00008 * 19 17 15 23 23 C 1.46931 * 110.20588 * 52.53525 * 10 9 7 24 24 C 1.50738 * 118.43199 * 179.85677 * 6 5 4 25 25 H 1.09005 * 109.47174 * 300.00243 * 1 2 3 26 26 H 1.09002 * 109.46937 * 59.99911 * 1 2 3 27 27 H 1.08998 * 109.47065 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.11458 * 0.07101 * 4 3 2 29 29 H 1.07999 * 119.78097 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.83514 * 0.03595 * 8 3 2 31 31 H 1.08997 * 109.27119 * 102.66152 * 9 7 6 32 32 H 1.08993 * 109.26884 * 222.17636 * 9 7 6 33 33 H 1.09009 * 109.47156 * 53.95771 * 11 10 9 34 34 H 1.08999 * 109.47551 * 173.95259 * 11 10 9 35 35 H 0.96707 * 114.00118 * 299.99758 * 14 12 11 36 36 H 0.97002 * 119.99606 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.50043 * 168.98300 * 23 10 9 38 38 H 1.09006 * 109.64453 * 48.47561 * 23 10 9 39 39 H 1.09002 * 109.39027 * 283.27797 * 24 6 5 40 40 H 1.08996 * 109.38746 * 43.07561 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2928 2.3763 -0.0005 5 6 1.9266 3.6014 -0.0011 6 6 3.3118 3.6758 -0.0001 7 6 4.0630 2.5195 0.0029 8 6 3.4290 1.2864 0.0005 9 6 5.5690 2.5500 0.0141 10 7 6.0588 3.8703 -0.3946 11 6 5.8278 4.0971 -1.8274 12 6 6.6820 3.1237 -2.6421 13 1 6.4087 2.0997 -2.3876 14 8 8.0630 3.3365 -2.3428 15 6 6.4454 3.3568 -4.1121 16 1 5.7546 4.1223 -4.4331 17 6 7.1110 2.5928 -5.0471 18 7 7.9519 1.6601 -4.6561 19 14 6.8173 2.8812 -6.8691 20 1 7.1892 4.2765 -7.2157 21 1 7.6465 1.9365 -7.6598 22 1 5.3824 2.6595 -7.1804 23 6 5.4234 4.9199 0.4138 24 6 3.9574 5.0379 -0.0041 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2140 2.3243 0.0002 29 1 1.3406 4.5086 -0.0019 30 1 4.0166 0.3803 0.0004 31 1 5.9258 2.3296 1.0202 32 1 5.9492 1.7965 -0.6756 33 1 4.7743 3.9348 -2.0558 34 1 6.1011 5.1211 -2.0820 35 1 8.3763 4.2288 -2.5446 36 1 8.4204 1.1229 -5.3140 37 1 5.9308 5.8691 0.2416 38 1 5.4831 4.6558 1.4697 39 1 3.8999 5.4628 -1.0062 40 1 3.4331 5.6889 0.6955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929341442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:06 Heat of formation + Delta-G solvation = -80.209433 kcal Electronic energy + Delta-G solvation = -21971.132565 eV Core-core repulsion = 18750.036082 eV Total energy + Delta-G solvation = -3221.096484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65916 -40.10764 -37.96258 -36.61600 -34.20319 -33.60354 -31.98320 -30.39049 -29.98645 -27.86254 -27.12897 -25.23127 -23.71728 -23.26664 -22.49852 -20.19114 -18.98129 -18.66837 -17.42220 -16.80791 -16.69572 -16.63948 -16.51738 -16.12658 -15.79859 -15.52446 -14.99574 -14.73841 -14.44317 -14.33400 -14.25306 -13.49869 -13.36623 -13.10796 -12.98045 -12.88495 -12.81927 -12.77092 -12.42674 -12.22713 -12.01456 -11.83527 -11.70687 -11.55582 -10.94409 -10.66890 -10.06946 -9.76970 -9.11400 -9.01047 -8.11782 -6.37533 0.30986 0.41874 1.39471 1.41459 1.49491 2.34864 2.38831 2.70056 3.12361 3.16500 3.77479 3.79270 3.91884 4.09134 4.18087 4.22592 4.31345 4.34483 4.37231 4.42518 4.48384 4.60364 4.64664 4.68246 4.76170 4.86422 4.91179 4.96798 5.01420 5.05585 5.14625 5.30600 5.36133 5.61159 5.64770 5.76706 5.82314 6.04492 6.22860 6.30020 6.44929 6.75789 7.36488 7.66148 8.92644 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.005456 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.051051 B = 5130.833225 C = 6029.949108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.113 3.887 4 C -0.208 4.208 5 C -0.080 4.080 6 C -0.125 4.125 7 C -0.077 4.077 8 C -0.172 4.172 9 C 0.091 3.909 10 N -0.525 5.525 11 C 0.051 3.949 12 C 0.238 3.762 13 H 0.015 0.985 14 O -0.570 6.570 15 C -0.588 4.588 16 H 0.057 0.943 17 C 0.027 3.973 18 N -0.900 5.900 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.049 3.951 24 C -0.107 4.107 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.353 0.647 36 H 0.261 0.739 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.345 4.444 11.571 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.068 3.932 4 C -0.226 4.226 5 C -0.097 4.097 6 C -0.126 4.126 7 C -0.079 4.079 8 C -0.191 4.191 9 C -0.037 4.037 10 N -0.246 5.246 11 C -0.077 4.077 12 C 0.180 3.820 13 H 0.033 0.967 14 O -0.374 6.374 15 C -0.626 4.626 16 H 0.075 0.925 17 C -0.176 4.176 18 N -0.537 5.537 19 Si 0.782 3.218 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.078 4.078 24 C -0.145 4.145 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.137 0.863 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.197 0.803 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.649 3.505 11.803 19.136 hybrid contribution -0.980 0.137 -1.498 1.795 sum -15.630 3.642 10.305 19.072 Atomic orbital electron populations 1.23346 0.76338 1.05547 1.02301 1.86044 1.23667 1.26938 1.88861 1.19037 0.92038 0.85121 0.97041 1.21438 1.01086 0.91624 1.08471 1.21200 0.93353 0.98210 0.96983 1.19746 0.94102 0.94958 1.03749 1.20306 0.97342 0.92578 0.97658 1.20445 0.92428 0.98154 1.08078 1.21084 0.88079 0.92845 1.01700 1.62559 1.56075 1.01895 1.04040 1.22643 0.97756 1.00163 0.87184 1.19154 0.79161 0.92752 0.90918 0.96692 1.86501 1.28363 1.34673 1.87815 1.22017 1.26961 1.20273 0.93351 0.92478 1.25881 0.94062 0.94050 1.03586 1.70224 1.26854 1.21302 1.35295 0.85651 0.78180 0.78498 0.79489 1.18834 1.20933 1.19685 1.22333 0.91741 0.95756 0.98012 1.21057 0.97405 0.93178 1.02872 0.91203 0.91995 0.86400 0.82742 0.82993 0.86312 0.88465 0.91969 0.95496 0.91114 0.80314 0.93040 0.89114 0.89688 0.91204 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.82 113.37 1.11 1.42 16 2 O -0.34 -9.38 10.50 -92.43 -0.97 -10.35 16 3 C 0.11 3.37 6.68 22.46 0.15 3.52 16 4 C -0.21 -5.09 9.04 22.32 0.20 -4.89 16 5 C -0.08 -1.95 9.65 22.31 0.22 -1.74 16 6 C -0.13 -3.63 5.06 -19.82 -0.10 -3.73 16 7 C -0.08 -2.60 5.20 -19.87 -0.10 -2.71 16 8 C -0.17 -5.84 9.59 22.43 0.22 -5.63 16 9 C 0.09 3.34 5.42 85.59 0.46 3.80 16 10 N -0.52 -19.06 4.89 -901.82 -4.41 -23.47 16 11 C 0.05 2.12 3.56 86.30 0.31 2.42 16 12 C 0.24 12.58 2.72 29.85 0.08 12.66 16 13 H 0.02 0.92 6.35 -2.39 -0.02 0.90 16 14 O -0.57 -30.82 12.59 -148.98 -1.88 -32.69 16 15 C -0.59 -33.16 8.76 25.60 0.22 -32.93 16 16 H 0.06 3.10 7.74 -2.92 -0.02 3.07 16 17 C 0.03 1.52 5.40 84.65 0.46 1.98 16 18 N -0.90 -55.30 12.84 21.45 0.28 -55.03 16 19 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 20 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 C 0.05 1.33 6.01 86.26 0.52 1.85 16 24 C -0.11 -2.65 5.17 29.82 0.15 -2.50 16 25 H 0.07 0.90 7.67 -2.38 -0.02 0.88 16 26 H 0.06 0.91 7.67 -2.39 -0.02 0.90 16 27 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.16 2.71 6.32 -2.91 -0.02 2.69 16 29 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.06 2.72 6.03 -2.39 -0.01 2.70 16 33 H 0.03 1.16 5.87 -2.38 -0.01 1.15 16 34 H 0.07 2.81 8.09 -2.39 -0.02 2.79 16 35 H 0.35 16.94 9.04 -74.05 -0.67 16.27 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.08 2.07 8.05 -2.38 -0.02 2.05 16 39 H 0.07 1.86 7.04 -2.39 -0.02 1.85 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -70.64 320.58 -0.68 -71.32 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.38 Total: 30.41 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 3.90 Total: -26.47 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -4.13 Total: -78.50 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -2.85 Total: -43.04 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.64 -0.68 -71.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929341442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.892 kcal (2) G-P(sol) polarization free energy of solvation -70.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds