Wall clock time and date at job start Mon Mar 30 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35899 * 117.00293 * 2 1 4 4 C 1.38725 * 120.06065 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94691 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05578 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94367 * 179.74411 * 6 5 4 8 8 N 1.46893 * 115.55120 * 308.71023 * 7 6 5 9 9 C 1.46904 * 111.00263 * 294.70675 * 8 7 6 10 10 C 1.53003 * 109.47116 * 181.37992 * 9 8 7 11 11 H 1.08993 * 109.47118 * 60.00158 * 10 9 8 12 12 O 1.42903 * 109.47043 * 300.00053 * 10 9 8 13 13 C 1.50702 * 109.46926 * 180.02562 * 10 9 8 14 14 H 1.07998 * 120.00130 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99851 * 180.02562 * 13 10 9 16 16 N 1.31521 * 120.00216 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99884 * 179.97438 * 15 13 10 18 18 H 1.48491 * 109.47210 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46957 * 119.99798 * 17 15 13 20 20 H 1.48498 * 109.47108 * 239.99387 * 17 15 13 21 21 C 1.53000 * 117.49671 * 163.00668 * 7 6 5 22 22 C 1.53001 * 60.00041 * 252.50778 * 21 7 6 23 23 C 1.38264 * 120.10939 * 0.02562 * 6 5 4 24 24 C 1.38149 * 120.06113 * 0.02562 * 23 6 5 25 25 H 1.08999 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47146 * 300.00119 * 1 2 3 27 27 H 1.09000 * 109.47292 * 60.00283 * 1 2 3 28 28 H 1.08001 * 120.02403 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.96841 * 179.97438 * 5 4 3 30 30 H 1.00902 * 111.00529 * 170.75287 * 8 7 6 31 31 H 1.08991 * 109.47214 * 301.38209 * 9 8 7 32 32 H 1.08998 * 109.46640 * 61.38367 * 9 8 7 33 33 H 0.96696 * 114.00203 * 299.99733 * 12 10 9 34 34 H 0.96992 * 120.00200 * 180.02562 * 16 15 13 35 35 H 1.09000 * 117.50093 * 359.97438 * 21 7 6 36 36 H 1.09001 * 117.49771 * 145.02098 * 21 7 6 37 37 H 1.08998 * 117.50142 * 252.51549 * 22 21 7 38 38 H 1.08999 * 117.49757 * 107.48511 * 22 21 7 39 39 H 1.08005 * 119.97382 * 179.97438 * 23 6 5 40 40 H 1.07992 * 120.03151 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0005 7 6 3.9861 5.0185 0.0070 8 7 5.0075 5.2041 1.0462 9 6 4.4060 5.1787 2.3862 10 6 5.4932 5.4091 3.4377 11 1 5.9627 6.3780 3.2686 12 8 6.4783 4.3786 3.3381 13 6 4.8762 5.3823 4.8124 14 1 3.8149 5.2171 4.9248 15 6 5.6667 5.5688 5.9266 16 7 6.9593 5.7695 5.7897 17 14 4.9018 5.5364 7.6305 18 1 3.4414 5.2945 7.5129 19 1 5.5204 4.4485 8.4301 20 1 5.1358 6.8395 8.3030 21 6 3.1521 6.2381 -0.3904 22 6 4.2205 5.6984 -1.3435 23 6 1.9211 3.6047 0.0000 24 6 1.2914 2.3751 0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.0208 0.3799 0.0014 29 1 5.1345 2.5750 0.0019 30 1 5.5235 6.0585 0.8977 31 1 3.6547 5.9646 2.4622 32 1 3.9365 4.2096 2.5552 33 1 6.1305 3.4872 3.4779 34 1 7.5154 5.9003 6.5735 35 1 2.1088 6.0693 -0.6569 36 1 3.3613 7.1786 0.1193 37 1 5.1325 6.2837 -1.4606 38 1 3.8799 5.1745 -2.2365 39 1 1.3341 4.5114 0.0000 40 1 0.2129 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930223365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:31 Heat of formation + Delta-G solvation = -56.044881 kcal Electronic energy + Delta-G solvation = -21386.487668 eV Core-core repulsion = 18166.439038 eV Total energy + Delta-G solvation = -3220.048630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24274 -39.84765 -37.97835 -37.19813 -34.25938 -33.68895 -31.98915 -30.86599 -29.54101 -28.11642 -26.15479 -24.14286 -23.68633 -22.85266 -22.32443 -20.68707 -19.13405 -18.94584 -17.29511 -17.01597 -16.74106 -16.63238 -16.57131 -15.97266 -15.76986 -15.55155 -14.89301 -14.63262 -14.53622 -14.30614 -14.02958 -13.58246 -13.41381 -13.04051 -12.85353 -12.80482 -12.77021 -12.52133 -12.34582 -12.12865 -12.02610 -11.76261 -11.53466 -11.18638 -10.97819 -10.71863 -10.05323 -9.91822 -9.15005 -8.97743 -8.13536 -6.39276 0.42561 0.44388 1.38803 1.40262 1.52246 2.37956 2.40498 2.69362 2.86088 3.12626 3.35454 3.68797 3.84781 3.94100 4.01525 4.12305 4.32177 4.34453 4.41117 4.46339 4.53167 4.58398 4.64765 4.67168 4.74047 4.74965 4.82421 4.97800 5.08048 5.10836 5.21502 5.32496 5.40095 5.60590 5.71651 5.76793 5.84131 6.04864 6.21394 6.46424 6.51231 6.74094 7.34600 7.60045 8.91110 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.004730 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.156380 B = 5917.863174 C = 6888.066078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.113 3.887 4 C -0.165 4.165 5 C -0.060 4.060 6 C -0.081 4.081 7 C 0.077 3.923 8 N -0.643 5.643 9 C 0.068 3.932 10 C 0.234 3.766 11 H 0.020 0.980 12 O -0.569 6.569 13 C -0.586 4.586 14 H 0.055 0.945 15 C 0.028 3.972 16 N -0.899 5.899 17 Si 0.958 3.042 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.277 1.277 21 C -0.210 4.210 22 C -0.149 4.149 23 C -0.082 4.082 24 C -0.208 4.208 25 H 0.119 0.881 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.341 0.659 31 H 0.021 0.979 32 H 0.054 0.946 33 H 0.351 0.649 34 H 0.261 0.739 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.138 0.862 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.751 -6.334 -14.840 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.184 4.184 5 C -0.079 4.079 6 C -0.082 4.082 7 C -0.016 4.016 8 N -0.272 5.272 9 C -0.061 4.061 10 C 0.176 3.824 11 H 0.038 0.962 12 O -0.372 6.372 13 C -0.625 4.625 14 H 0.074 0.926 15 C -0.175 4.175 16 N -0.536 5.536 17 Si 0.783 3.217 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.250 4.250 22 C -0.186 4.186 23 C -0.100 4.100 24 C -0.226 4.226 25 H 0.137 0.863 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.145 0.855 30 H 0.159 0.841 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.156 0.844 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.917 -6.637 -14.847 20.768 hybrid contribution -0.966 0.748 1.266 1.759 sum -13.883 -5.889 -13.581 20.294 Atomic orbital electron populations 1.23332 0.76557 1.05525 1.02193 1.86037 1.23424 1.26781 1.88772 1.19173 0.92446 0.84774 0.96785 1.20585 0.91971 0.98732 1.07103 1.20846 1.00363 0.90839 0.95806 1.18804 0.93031 0.92484 1.03892 1.20205 0.96082 0.90615 0.94648 1.60125 1.23847 1.42521 1.00669 1.22314 0.96285 0.99244 0.88251 1.19195 0.85162 0.87144 0.90872 0.96192 1.86486 1.39313 1.17017 1.94348 1.22030 0.94791 1.52473 0.93176 0.92644 1.25868 0.95017 0.93373 1.03237 1.70221 1.05595 1.47089 1.30661 0.85530 0.78885 0.77834 0.79443 1.18917 1.20444 1.20272 1.23670 0.98228 0.98270 1.04798 1.23225 1.00526 1.02127 0.92750 1.21035 0.93569 0.98018 0.97385 1.21381 1.01010 0.91517 1.08700 0.86299 0.92160 0.91432 0.84687 0.85514 0.84067 0.96102 0.92780 0.80459 0.92969 0.87178 0.89205 0.87961 0.87150 0.84396 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.86 10.50 -92.41 -0.97 -8.83 16 3 C 0.11 2.93 6.69 22.51 0.15 3.08 16 4 C -0.17 -4.59 9.99 22.36 0.22 -4.36 16 5 C -0.06 -1.79 9.62 22.25 0.21 -1.57 16 6 C -0.08 -2.34 4.63 -19.85 -0.09 -2.43 16 7 C 0.08 2.21 2.05 2.78 0.01 2.22 16 8 N -0.64 -22.97 6.43 -473.91 -3.05 -26.02 16 9 C 0.07 2.86 5.11 86.30 0.44 3.30 16 10 C 0.23 12.18 3.02 29.85 0.09 12.27 16 11 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 12 O -0.57 -30.54 12.60 -148.98 -1.88 -32.41 16 13 C -0.59 -32.80 8.76 25.60 0.22 -32.58 16 14 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 15 C 0.03 1.56 5.40 84.65 0.46 2.02 16 16 N -0.90 -54.33 12.84 21.45 0.28 -54.06 16 17 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 C -0.21 -5.05 9.68 30.59 0.30 -4.75 16 22 C -0.15 -3.43 9.99 30.60 0.31 -3.13 16 23 C -0.08 -2.05 9.32 22.25 0.21 -1.84 16 24 C -0.21 -4.80 9.04 22.37 0.20 -4.60 16 25 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 0.78 7.66 -2.39 -0.02 0.77 16 27 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16 28 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 30 H 0.34 12.06 8.59 -89.69 -0.77 11.29 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 2.36 7.63 -2.39 -0.02 2.34 16 33 H 0.35 17.30 9.04 -74.06 -0.67 16.63 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.11 2.25 6.44 -2.39 -0.02 2.24 16 36 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.14 2.94 6.29 -2.91 -0.02 2.92 16 40 H 0.15 2.57 6.30 -2.91 -0.02 2.55 16 Total: -1.00 -67.07 336.96 -0.14 -67.21 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: -0.38 Total: 39.22 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.84 Total: -31.01 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -2.77 Total: -80.08 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -2.85 Total: -41.24 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.07 -0.14 -67.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930223365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.163 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds