Wall clock time and date at job start Mon Mar 30 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46911 * 2 1 4 4 C 1.37095 * 120.00281 * 264.77324 * 3 2 1 5 5 H 1.07997 * 120.00706 * 138.86588 * 4 3 2 6 6 C 1.38959 * 119.99699 * 318.87075 * 4 3 2 7 7 N 1.31402 * 119.99968 * 341.81766 * 6 4 3 8 8 Si 1.86798 * 119.99752 * 161.81931 * 6 4 3 9 9 H 1.48505 * 109.47179 * 60.00290 * 8 6 4 10 10 H 1.48503 * 109.47013 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47479 * 299.99928 * 8 6 4 12 12 C 1.34781 * 120.00115 * 84.77290 * 3 2 1 13 13 O 1.21292 * 120.00209 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99804 * 0.02562 * 12 3 2 15 15 C 1.50697 * 109.47166 * 179.97438 * 14 12 3 16 16 C 1.38289 * 119.94498 * 265.00070 * 15 14 12 17 17 C 1.38122 * 120.05454 * 180.02562 * 16 15 14 18 18 C 1.38747 * 119.94547 * 359.97438 * 17 16 15 19 19 O 1.35902 * 120.05675 * 179.97438 * 18 17 16 20 20 C 1.42898 * 116.99806 * 359.97438 * 19 18 17 21 21 C 1.38709 * 119.88848 * 0.27286 * 18 17 16 22 22 C 1.38166 * 119.94514 * 359.49217 * 21 18 17 23 23 C 1.50699 * 119.97426 * 180.23051 * 22 21 18 24 24 H 1.08998 * 109.47038 * 60.00008 * 1 2 3 25 25 H 1.08996 * 109.46748 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46669 * 299.99533 * 1 2 3 27 27 H 1.08994 * 109.47138 * 240.00175 * 2 1 3 28 28 H 1.08998 * 109.47038 * 119.99992 * 2 1 3 29 29 H 0.96998 * 120.00434 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46798 * 59.99668 * 14 12 3 31 31 H 1.08996 * 109.46803 * 299.99951 * 14 12 3 32 32 H 1.07999 * 119.97073 * 0.02562 * 16 15 14 33 33 H 1.07996 * 120.02566 * 179.97438 * 17 16 15 34 34 H 1.08994 * 109.47060 * 59.99944 * 20 19 18 35 35 H 1.09005 * 109.47238 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.47382 * 299.99591 * 20 19 18 37 37 H 1.08008 * 120.02919 * 179.72289 * 21 18 17 38 38 H 1.09001 * 109.47325 * 270.25356 * 23 22 21 39 39 H 1.09002 * 109.47243 * 30.25838 * 23 22 21 40 40 H 1.09003 * 109.46897 * 150.25562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0744 3.0220 -1.3534 6 6 3.0368 1.2842 -2.1607 7 7 3.6786 0.1818 -1.8455 8 14 3.0491 1.9005 -3.9240 9 1 3.6529 3.2565 -3.9703 10 1 3.8479 0.9745 -4.7665 11 1 1.6569 1.9609 -4.4372 12 6 2.1427 2.0521 1.1624 13 8 2.5474 3.1955 1.1624 14 6 1.7800 1.3811 2.4621 15 6 2.0085 2.3389 3.6029 16 6 3.2017 2.3087 4.3012 17 6 3.4133 3.1852 5.3474 18 6 2.4277 4.0970 5.6973 19 8 2.6333 4.9601 6.7267 20 6 3.8877 4.8730 7.4056 21 6 1.2297 4.1218 4.9986 22 6 1.0247 3.2462 3.9496 23 6 -0.2745 3.2762 3.1867 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.1592 -0.3118 -2.5283 30 1 2.4021 0.4968 2.6004 31 1 0.7307 1.0870 2.4387 32 1 3.9687 1.5991 4.0282 33 1 4.3452 3.1609 5.8927 34 1 4.6966 5.0610 6.6997 35 1 3.9213 5.6150 8.2034 36 1 4.0017 3.8764 7.8319 37 1 0.4591 4.8276 5.2718 38 1 -0.9878 2.5994 3.6571 39 1 -0.6764 4.2894 3.1932 40 1 -0.0991 2.9615 2.1580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930619175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:57 Heat of formation + Delta-G solvation = -50.737934 kcal Electronic energy + Delta-G solvation = -21741.845312 eV Core-core repulsion = 18522.026809 eV Total energy + Delta-G solvation = -3219.818504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.06492 -38.69189 -37.30751 -34.85131 -32.42849 -32.11901 -31.43262 -29.39009 -28.43485 -26.47139 -26.30225 -24.45441 -22.28445 -21.89519 -20.60918 -18.71334 -17.53822 -16.72810 -16.29278 -15.88827 -15.61845 -15.03031 -14.94381 -14.27815 -14.04452 -13.61423 -13.44464 -13.32835 -12.99584 -12.86670 -12.47318 -12.09104 -12.01568 -11.84716 -11.75216 -11.66298 -11.21264 -11.04953 -10.96405 -10.85599 -10.63117 -10.52269 -10.33441 -10.27217 -10.07121 -8.87318 -8.46433 -8.37001 -7.70006 -7.36644 -6.27957 -3.96022 1.65272 1.76285 3.22266 3.27221 3.30887 3.38538 3.97439 4.01967 4.22888 4.94554 4.97459 5.06465 5.10097 5.12540 5.18704 5.28217 5.41573 5.53179 5.60741 5.65176 5.80351 5.88437 5.93856 5.96689 6.05535 6.17145 6.21841 6.25856 6.34403 6.49058 6.52208 6.59874 6.71973 6.89209 7.03221 7.09176 7.24409 7.60130 7.62196 8.34916 8.58229 9.25990 9.45547 10.09534 10.77283 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.004387 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.915822 B = 6381.605122 C = 6714.367207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.445 5.445 4 C -0.307 4.307 5 H 0.086 0.914 6 C 0.039 3.961 7 N -0.874 5.874 8 Si 0.917 3.083 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.467 3.533 13 O -0.570 6.570 14 C -0.100 4.100 15 C -0.078 4.078 16 C -0.067 4.067 17 C -0.212 4.212 18 C 0.116 3.884 19 O -0.322 6.322 20 C 0.029 3.971 21 C -0.153 4.153 22 C -0.032 4.032 23 C -0.116 4.116 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.047 0.953 29 H 0.267 0.733 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 0.377 13.068 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.165 5.165 4 C -0.435 4.435 5 H 0.104 0.896 6 C -0.165 4.165 7 N -0.512 5.512 8 Si 0.743 3.257 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.254 3.746 13 O -0.453 6.453 14 C -0.140 4.140 15 C -0.079 4.079 16 C -0.086 4.086 17 C -0.230 4.230 18 C 0.071 3.929 19 O -0.236 6.236 20 C -0.066 4.066 21 C -0.171 4.171 22 C -0.032 4.032 23 C -0.172 4.172 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.914 0.945 13.020 13.628 hybrid contribution 0.504 -0.050 -0.868 1.005 sum -3.410 0.895 12.151 12.653 Atomic orbital electron populations 1.22236 0.98326 1.00339 1.01496 1.21446 0.91543 0.85770 1.03387 1.43447 1.56593 1.11705 1.04768 1.19317 1.34771 0.98460 0.90985 0.89621 1.25400 0.94096 0.96586 1.00466 1.69911 1.29622 1.17623 1.33996 0.86163 0.78330 0.78834 0.82340 1.19795 1.21029 1.19917 1.20239 0.81979 0.87938 0.84413 1.90547 1.49371 1.18621 1.86712 1.20737 1.02873 0.97786 0.92606 1.19260 0.94084 0.97986 0.96583 1.20768 0.96143 0.97795 0.93856 1.21060 0.99599 1.00034 1.02340 1.18888 0.94705 0.90433 0.88862 1.86018 1.37295 1.55839 1.44492 1.22979 0.84782 1.02313 0.96514 1.20136 0.96279 1.02677 0.98040 1.19449 0.96129 0.93688 0.93974 1.20829 0.93633 1.02329 1.00431 0.92415 0.93127 0.93876 0.87934 0.93424 0.92316 0.89523 0.89444 0.86003 0.85981 0.92753 0.88689 0.92911 0.85710 0.91286 0.91586 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.15 37.16 0.38 -2.51 16 2 C 0.10 2.19 5.41 -4.04 -0.02 2.17 16 3 N -0.44 -11.17 2.50 -114.81 -0.29 -11.46 16 4 C -0.31 -8.54 8.84 -14.93 -0.13 -8.67 16 5 H 0.09 2.49 7.82 -52.49 -0.41 2.08 16 6 C 0.04 1.03 4.95 -17.47 -0.09 0.94 16 7 N -0.87 -23.66 11.61 55.50 0.64 -23.02 16 8 Si 0.92 20.76 29.59 -169.99 -5.03 15.73 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 C 0.47 11.36 6.81 -10.98 -0.07 11.29 16 13 O -0.57 -16.12 15.95 5.55 0.09 -16.03 16 14 C -0.10 -1.87 3.75 -29.03 -0.11 -1.98 16 15 C -0.08 -1.44 4.37 -104.60 -0.46 -1.90 16 16 C -0.07 -1.16 9.67 -39.61 -0.38 -1.54 16 17 C -0.21 -3.28 9.04 -39.44 -0.36 -3.64 16 18 C 0.12 1.84 6.69 -39.22 -0.26 1.58 16 19 O -0.32 -4.58 10.50 -19.43 -0.20 -4.78 16 20 C 0.03 0.29 9.81 101.05 0.99 1.28 16 21 C -0.15 -2.48 9.64 -39.43 -0.38 -2.86 16 22 C -0.03 -0.55 5.88 -104.65 -0.62 -1.17 16 23 C -0.12 -1.75 9.21 36.01 0.33 -1.41 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.69 6.60 -51.93 -0.34 0.35 16 27 H 0.10 2.42 5.76 -51.93 -0.30 2.12 16 28 H 0.05 0.92 6.66 -51.93 -0.35 0.57 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 31 H 0.09 1.44 5.38 -51.93 -0.28 1.16 16 32 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.12 1.55 6.30 -52.49 -0.33 1.22 16 34 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 37 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 40 H 0.07 1.30 6.15 -51.93 -0.32 0.98 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -32.52 328.07 -6.62 -39.14 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.59 Total: 3.90 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.18 Total: -8.42 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.36 Total: -34.48 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.12 Total: -20.81 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.52 -6.62 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.596 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds