Wall clock time and date at job start Mon Mar 30 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46911 * 2 1 4 4 C 1.37095 * 120.00281 * 264.77324 * 3 2 1 5 5 H 1.07997 * 120.00706 * 138.86588 * 4 3 2 6 6 C 1.38959 * 119.99699 * 318.87075 * 4 3 2 7 7 N 1.31402 * 119.99968 * 341.81766 * 6 4 3 8 8 Si 1.86798 * 119.99752 * 161.81931 * 6 4 3 9 9 H 1.48505 * 109.47179 * 60.00290 * 8 6 4 10 10 H 1.48503 * 109.47013 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47479 * 299.99928 * 8 6 4 12 12 C 1.34781 * 120.00115 * 84.77290 * 3 2 1 13 13 O 1.21292 * 120.00209 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99804 * 0.02562 * 12 3 2 15 15 C 1.50697 * 109.47166 * 179.97438 * 14 12 3 16 16 C 1.38289 * 119.94498 * 265.00070 * 15 14 12 17 17 C 1.38122 * 120.05454 * 180.02562 * 16 15 14 18 18 C 1.38747 * 119.94547 * 359.97438 * 17 16 15 19 19 O 1.35902 * 120.05675 * 179.97438 * 18 17 16 20 20 C 1.42898 * 116.99806 * 359.97438 * 19 18 17 21 21 C 1.38709 * 119.88848 * 0.27286 * 18 17 16 22 22 C 1.38166 * 119.94514 * 359.49217 * 21 18 17 23 23 C 1.50699 * 119.97426 * 180.23051 * 22 21 18 24 24 H 1.08998 * 109.47038 * 60.00008 * 1 2 3 25 25 H 1.08996 * 109.46748 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46669 * 299.99533 * 1 2 3 27 27 H 1.08994 * 109.47138 * 240.00175 * 2 1 3 28 28 H 1.08998 * 109.47038 * 119.99992 * 2 1 3 29 29 H 0.96998 * 120.00434 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46798 * 59.99668 * 14 12 3 31 31 H 1.08996 * 109.46803 * 299.99951 * 14 12 3 32 32 H 1.07999 * 119.97073 * 0.02562 * 16 15 14 33 33 H 1.07996 * 120.02566 * 179.97438 * 17 16 15 34 34 H 1.08994 * 109.47060 * 59.99944 * 20 19 18 35 35 H 1.09005 * 109.47238 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.47382 * 299.99591 * 20 19 18 37 37 H 1.08008 * 120.02919 * 179.72289 * 21 18 17 38 38 H 1.09001 * 109.47325 * 270.25356 * 23 22 21 39 39 H 1.09002 * 109.47243 * 30.25838 * 23 22 21 40 40 H 1.09003 * 109.46897 * 150.25562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0744 3.0220 -1.3534 6 6 3.0368 1.2842 -2.1607 7 7 3.6786 0.1818 -1.8455 8 14 3.0491 1.9005 -3.9240 9 1 3.6529 3.2565 -3.9703 10 1 3.8479 0.9745 -4.7665 11 1 1.6569 1.9609 -4.4372 12 6 2.1427 2.0521 1.1624 13 8 2.5474 3.1955 1.1624 14 6 1.7800 1.3811 2.4621 15 6 2.0085 2.3389 3.6029 16 6 3.2017 2.3087 4.3012 17 6 3.4133 3.1852 5.3474 18 6 2.4277 4.0970 5.6973 19 8 2.6333 4.9601 6.7267 20 6 3.8877 4.8730 7.4056 21 6 1.2297 4.1218 4.9986 22 6 1.0247 3.2462 3.9496 23 6 -0.2745 3.2762 3.1867 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.1592 -0.3118 -2.5283 30 1 2.4021 0.4968 2.6004 31 1 0.7307 1.0870 2.4387 32 1 3.9687 1.5991 4.0282 33 1 4.3452 3.1609 5.8927 34 1 4.6966 5.0610 6.6997 35 1 3.9213 5.6150 8.2034 36 1 4.0017 3.8764 7.8319 37 1 0.4591 4.8276 5.2718 38 1 -0.9878 2.5994 3.6571 39 1 -0.6764 4.2894 3.1932 40 1 -0.0991 2.9615 2.1580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930619175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:57 Heat of formation + Delta-G solvation = -70.037531 kcal Electronic energy + Delta-G solvation = -21742.682206 eV Core-core repulsion = 18522.026809 eV Total energy + Delta-G solvation = -3220.655397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32139 -40.31506 -38.61812 -36.76014 -34.14431 -33.50190 -32.88972 -31.09122 -29.61147 -27.81667 -27.43480 -26.24480 -23.89993 -23.21651 -21.91538 -20.43960 -18.66871 -18.64560 -17.70460 -17.50748 -16.82970 -16.59375 -16.44697 -15.79547 -15.62750 -15.03355 -14.80118 -14.64030 -14.43489 -14.16610 -14.02131 -13.62871 -13.53916 -13.10224 -13.02714 -12.87919 -12.82355 -12.67170 -12.60883 -12.33985 -12.10972 -12.08725 -11.78000 -11.73672 -11.63485 -10.84676 -10.30080 -9.69004 -9.34474 -8.97160 -8.30432 -6.06584 0.41532 0.48226 1.40308 1.41208 1.51207 2.13626 2.31801 2.39177 2.73240 3.04692 3.26376 3.84174 3.85501 4.01002 4.20195 4.23794 4.33263 4.38483 4.40373 4.43494 4.45170 4.60661 4.68887 4.70476 4.76168 4.80898 4.83353 4.92619 5.05463 5.09170 5.21198 5.34613 5.36945 5.45587 5.48836 5.59436 5.76953 5.85579 6.27724 6.48556 6.62219 7.24790 7.53229 8.16045 8.72790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.004387 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.915822 B = 6381.605122 C = 6714.367207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.457 5.457 4 C -0.340 4.340 5 H 0.058 0.942 6 C 0.005 3.995 7 N -0.892 5.892 8 Si 0.978 3.022 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.263 1.263 12 C 0.457 3.543 13 O -0.621 6.621 14 C -0.083 4.083 15 C -0.108 4.108 16 C -0.082 4.082 17 C -0.214 4.214 18 C 0.114 3.886 19 O -0.333 6.333 20 C 0.018 3.982 21 C -0.165 4.165 22 C -0.043 4.043 23 C -0.113 4.113 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.272 0.728 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.674 -0.189 14.190 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.022 4.022 3 N -0.177 5.177 4 C -0.468 4.468 5 H 0.076 0.924 6 C -0.197 4.197 7 N -0.530 5.530 8 Si 0.802 3.198 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.187 1.187 12 C 0.247 3.753 13 O -0.507 6.507 14 C -0.123 4.123 15 C -0.108 4.108 16 C -0.100 4.100 17 C -0.233 4.233 18 C 0.069 3.931 19 O -0.247 6.247 20 C -0.076 4.076 21 C -0.184 4.184 22 C -0.043 4.043 23 C -0.169 4.169 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.166 0.834 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.485 0.340 14.153 14.850 hybrid contribution 0.745 0.176 -1.114 1.352 sum -3.740 0.516 13.039 13.574 Atomic orbital electron populations 1.22124 0.95214 1.02549 1.01401 1.21565 0.94083 0.83582 1.03017 1.43735 1.56603 1.12971 1.04418 1.19273 1.36456 0.98001 0.93081 0.92414 1.26098 0.93219 0.96653 1.03755 1.69978 1.29584 1.18221 1.35209 0.85247 0.78876 0.77922 0.77795 1.20609 1.19663 1.18738 1.21122 0.80801 0.87430 0.85938 1.90496 1.51557 1.20920 1.87690 1.20596 1.04369 0.97710 0.89579 1.19369 0.95243 0.99109 0.97106 1.20989 0.96042 0.98516 0.94484 1.21319 1.00638 0.99337 1.01977 1.19065 0.94590 0.90368 0.89053 1.86012 1.39461 1.55282 1.43970 1.23326 0.83090 1.04214 0.96950 1.20389 0.97138 1.02838 0.98022 1.19717 0.96700 0.93523 0.94385 1.20839 0.93599 1.03682 0.98804 0.94088 0.89670 0.92403 0.90416 0.91559 0.91857 0.88285 0.87106 0.85502 0.83402 0.92558 0.85921 0.91526 0.84131 0.88304 0.90607 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 10.15 71.98 0.73 -4.42 16 2 C 0.10 4.25 5.41 86.38 0.47 4.72 16 3 N -0.46 -23.44 2.50 -635.52 -1.59 -25.03 16 4 C -0.34 -19.50 8.84 84.04 0.74 -18.75 16 5 H 0.06 3.55 7.82 -2.91 -0.02 3.53 16 6 C 0.01 0.28 4.95 84.93 0.42 0.70 16 7 N -0.89 -48.65 11.61 21.66 0.25 -48.40 16 8 Si 0.98 42.95 29.59 68.60 2.03 44.98 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 12 C 0.46 22.75 6.81 87.66 0.60 23.35 16 13 O -0.62 -36.46 15.95 -3.07 -0.05 -36.51 16 14 C -0.08 -3.07 3.75 29.10 0.11 -2.96 16 15 C -0.11 -3.90 4.37 -19.85 -0.09 -3.99 16 16 C -0.08 -2.78 9.67 22.25 0.22 -2.57 16 17 C -0.21 -6.38 9.04 22.36 0.20 -6.18 16 18 C 0.11 3.49 6.69 22.50 0.15 3.64 16 19 O -0.33 -8.82 10.50 -92.45 -0.97 -9.79 16 20 C 0.02 0.32 9.81 113.37 1.11 1.43 16 21 C -0.17 -5.20 9.64 22.37 0.22 -4.98 16 22 C -0.04 -1.45 5.88 -19.88 -0.12 -1.57 16 23 C -0.11 -3.30 9.21 71.24 0.66 -2.64 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 1.74 6.60 -2.39 -0.02 1.72 16 27 H 0.08 3.68 5.76 -2.39 -0.01 3.67 16 28 H 0.07 2.49 6.66 -2.39 -0.02 2.47 16 29 H 0.27 13.90 8.31 -92.71 -0.77 13.12 16 30 H 0.10 3.36 7.32 -2.39 -0.02 3.34 16 31 H 0.11 3.50 5.38 -2.39 -0.01 3.48 16 32 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.15 3.46 6.30 -2.91 -0.02 3.45 16 34 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 35 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 37 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.08 2.01 8.09 -2.39 -0.02 1.99 16 40 H 0.05 1.69 6.15 -2.39 -0.01 1.68 16 Total: -1.00 -72.50 328.07 6.12 -66.38 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 1.04 Total: 22.61 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 5.42 Total: -14.24 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -1.34 Total: -73.43 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.02 Total: -46.30 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -72.50 6.12 -66.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.660 kcal (2) G-P(sol) polarization free energy of solvation -72.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds