Wall clock time and date at job start Mon Mar 30 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99669 * 2 1 4 4 H 1.08999 * 110.26953 * 329.38196 * 3 2 1 5 5 C 1.51371 * 110.30090 * 91.45280 * 3 2 1 6 6 C 1.38496 * 130.38832 * 281.84719 * 5 3 2 7 7 C 1.38109 * 120.21559 * 179.97438 * 6 5 3 8 8 C 1.38258 * 119.93036 * 0.02562 * 7 6 5 9 9 C 1.38095 * 119.93691 * 0.02562 * 8 7 6 10 10 C 1.38217 * 109.76073 * 101.82749 * 5 3 2 11 11 C 1.51376 * 109.75921 * 0.02562 * 10 5 3 12 12 C 1.54341 * 110.38566 * 207.24311 * 3 2 1 13 13 H 1.09006 * 110.82024 * 149.16178 * 12 3 2 14 14 N 1.46905 * 110.82284 * 25.61481 * 12 3 2 15 15 C 1.46895 * 110.99982 * 160.57017 * 14 12 3 16 16 C 1.53003 * 109.46800 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.47153 * 60.00291 * 16 15 14 18 18 O 1.42899 * 109.47397 * 300.00383 * 16 15 14 19 19 C 1.50704 * 109.46996 * 180.02562 * 16 15 14 20 20 H 1.07999 * 120.00312 * 0.02562 * 19 16 15 21 21 C 1.37883 * 119.99739 * 180.02562 * 19 16 15 22 22 N 1.31514 * 120.00022 * 359.97438 * 21 19 16 23 23 Si 1.86795 * 119.99670 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47661 * 59.99262 * 23 21 19 25 25 H 1.48500 * 109.47319 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46949 * 299.99318 * 23 21 19 27 27 H 1.08995 * 109.47173 * 299.99575 * 1 2 3 28 28 H 1.08993 * 109.46913 * 60.00016 * 1 2 3 29 29 H 1.09004 * 109.46559 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.89563 * 359.96991 * 6 5 3 31 31 H 1.07993 * 120.03500 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.02968 * 179.97438 * 8 7 6 33 33 H 1.08008 * 119.89228 * 180.02562 * 9 8 7 34 34 H 1.08993 * 110.30376 * 136.10486 * 11 10 5 35 35 H 1.08999 * 110.30152 * 258.26154 * 11 10 5 36 36 H 1.00901 * 110.99743 * 36.61413 * 14 12 3 37 37 H 1.09000 * 109.47594 * 299.99828 * 15 14 12 38 38 H 1.09000 * 109.47489 * 60.00023 * 15 14 12 39 39 H 0.96706 * 113.99524 * 299.99811 * 18 16 15 40 40 H 0.96994 * 119.99460 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3599 2.0083 -0.5208 5 6 2.2567 1.7706 1.4192 6 6 1.3790 2.2798 2.3619 7 6 1.8370 2.6430 3.6132 8 6 3.1759 2.4988 3.9264 9 6 4.0527 1.9923 2.9874 10 6 3.5951 1.6260 1.7326 11 6 4.3398 1.0543 0.5452 12 6 3.4039 1.2735 -0.6623 13 1 3.6214 2.2221 -1.1534 14 7 3.5056 0.1570 -1.6116 15 6 4.6048 0.3724 -2.5619 16 6 4.6793 -0.8087 -3.5316 17 1 3.7389 -0.8914 -4.0765 18 8 4.9124 -2.0130 -2.7986 19 6 5.8074 -0.5881 -4.5062 20 1 6.4111 0.3050 -4.4403 21 6 6.0688 -1.5264 -5.4821 22 7 5.3339 -2.6142 -5.5621 23 14 7.4675 -1.2532 -6.6897 24 1 8.7484 -1.1419 -5.9467 25 1 7.5398 -2.3995 -7.6310 26 1 7.2266 -0.0013 -7.4512 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 0.3332 2.3932 2.1178 31 1 1.1500 3.0394 4.3462 32 1 3.5358 2.7827 4.9043 33 1 5.0984 1.8795 3.2331 34 1 5.2799 1.5856 0.3969 35 1 4.5248 -0.0099 0.6914 36 1 2.6320 0.0133 -2.0956 37 1 4.4272 1.2912 -3.1208 38 1 5.5453 0.4546 -2.0171 39 1 5.7341 -2.0102 -2.2886 40 1 5.5181 -3.2744 -6.2483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930711430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:43 Heat of formation + Delta-G solvation = -84.328998 kcal Electronic energy + Delta-G solvation = -21455.708885 eV Core-core repulsion = 18234.433763 eV Total energy + Delta-G solvation = -3221.275121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39463 -38.71375 -38.06437 -36.49130 -34.26074 -33.98244 -32.09507 -30.33378 -28.53082 -28.26009 -26.76409 -25.75891 -23.01705 -22.53323 -21.74409 -21.43699 -18.97453 -17.92731 -17.53335 -17.20397 -16.64786 -16.30363 -16.06893 -15.99351 -15.52299 -15.40789 -15.20772 -14.68073 -14.62174 -14.04448 -13.86314 -13.79298 -13.39094 -13.09261 -12.85775 -12.76999 -12.68651 -12.53147 -12.27721 -12.12319 -12.02405 -11.77235 -11.72426 -11.00302 -10.68850 -10.57457 -10.03971 -9.77707 -9.51912 -9.18833 -8.11142 -6.37537 0.37489 0.46955 1.41720 1.43718 1.51833 2.39989 2.65618 2.97231 3.14514 3.23166 3.47514 3.64733 3.92331 4.12649 4.17803 4.20872 4.30641 4.36438 4.45596 4.51484 4.53927 4.56575 4.64064 4.66535 4.77702 4.84821 4.90110 4.97503 5.08982 5.14903 5.26059 5.51234 5.58961 5.62345 5.72395 5.78363 6.03739 6.09397 6.15503 6.35231 6.55369 6.76658 7.36758 7.64773 8.93230 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030917 B = 0.003748 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.432831 B = 7468.470554 C = 8031.976888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.378 6.378 3 C 0.131 3.869 4 H 0.079 0.921 5 C -0.141 4.141 6 C -0.103 4.103 7 C -0.129 4.129 8 C -0.113 4.113 9 C -0.124 4.124 10 C -0.091 4.091 11 C -0.069 4.069 12 C 0.085 3.915 13 H 0.066 0.934 14 N -0.662 5.662 15 C 0.054 3.946 16 C 0.235 3.765 17 H 0.017 0.983 18 O -0.570 6.570 19 C -0.589 4.589 20 H 0.060 0.940 21 C 0.025 3.975 22 N -0.900 5.900 23 Si 0.961 3.039 24 H -0.267 1.267 25 H -0.285 1.285 26 H -0.268 1.268 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.339 0.661 37 H 0.024 0.976 38 H 0.064 0.936 39 H 0.352 0.648 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 12.648 17.497 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.297 6.297 3 C 0.072 3.928 4 H 0.097 0.903 5 C -0.142 4.142 6 C -0.121 4.121 7 C -0.147 4.147 8 C -0.131 4.131 9 C -0.142 4.142 10 C -0.092 4.092 11 C -0.107 4.107 12 C -0.025 4.025 13 H 0.084 0.916 14 N -0.293 5.293 15 C -0.075 4.075 16 C 0.177 3.823 17 H 0.034 0.966 18 O -0.373 6.373 19 C -0.627 4.627 20 H 0.078 0.922 21 C -0.178 4.178 22 N -0.537 5.537 23 Si 0.786 3.214 24 H -0.192 1.192 25 H -0.211 1.211 26 H -0.193 1.193 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.158 0.842 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.196 0.804 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.001 11.754 17.535 22.575 hybrid contribution 0.598 0.827 -1.296 1.649 sum -7.404 12.581 16.239 21.836 Atomic orbital electron populations 1.22996 0.80178 1.03587 1.00666 1.88113 1.20699 1.26259 1.94603 1.21576 0.94413 0.85216 0.91560 0.90308 1.21049 0.95036 1.01019 0.97051 1.20898 0.99570 0.98373 0.93238 1.21397 0.96450 1.00393 0.96415 1.21430 0.93486 0.98288 0.99863 1.20922 1.01072 1.00010 0.92192 1.20709 0.95225 0.97880 0.95385 1.21030 0.97840 1.01115 0.90721 1.22338 0.93838 0.93094 0.93222 0.91591 1.60271 1.07980 1.40953 1.20113 1.22562 0.94286 0.97514 0.93181 1.19162 0.94451 0.81244 0.87436 0.96558 1.86510 1.43729 1.41382 1.65663 1.22025 1.17859 1.06657 1.16137 0.92165 1.25924 0.98585 0.94496 0.98781 1.70227 1.40090 1.09762 1.33619 0.85592 0.79600 0.77708 0.78526 1.19179 1.21089 1.19261 0.92978 0.93114 0.89119 0.84867 0.83068 0.83115 0.84916 0.90441 0.90649 0.84197 0.95771 0.91726 0.80419 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.86 113.37 1.23 1.71 16 2 O -0.38 -11.46 9.30 -148.98 -1.39 -12.85 16 3 C 0.13 3.54 3.10 30.52 0.09 3.63 16 4 H 0.08 1.84 7.84 -2.39 -0.02 1.82 16 5 C -0.14 -3.57 5.80 -19.59 -0.11 -3.68 16 6 C -0.10 -2.08 9.97 22.30 0.22 -1.85 16 7 C -0.13 -2.17 10.05 22.24 0.22 -1.95 16 8 C -0.11 -1.96 10.05 22.24 0.22 -1.74 16 9 C -0.12 -2.69 10.04 22.30 0.22 -2.46 16 10 C -0.09 -2.41 6.14 -19.59 -0.12 -2.53 16 11 C -0.07 -2.03 6.43 30.52 0.20 -1.84 16 12 C 0.09 2.60 3.29 45.82 0.15 2.75 16 13 H 0.07 1.91 7.91 -2.38 -0.02 1.89 16 14 N -0.66 -24.73 5.69 -486.88 -2.77 -27.50 16 15 C 0.05 2.24 5.15 86.31 0.44 2.69 16 16 C 0.24 12.33 3.03 29.85 0.09 12.42 16 17 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 18 O -0.57 -31.15 12.60 -148.98 -1.88 -33.03 16 19 C -0.59 -32.74 8.76 25.60 0.22 -32.52 16 20 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 21 C 0.02 1.39 5.40 84.66 0.46 1.85 16 22 N -0.90 -54.87 12.84 21.45 0.28 -54.60 16 23 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H 0.05 0.94 7.89 -2.39 -0.02 0.92 16 28 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 29 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.13 2.10 7.87 -2.91 -0.02 2.08 16 31 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 2.56 8.08 -2.39 -0.02 2.54 16 36 H 0.34 13.02 8.01 -89.69 -0.72 12.30 16 37 H 0.02 0.98 8.09 -2.39 -0.02 0.96 16 38 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 39 H 0.35 17.36 9.04 -74.05 -0.67 16.69 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -68.54 334.96 -0.53 -69.07 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.35 Total: 36.70 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 3.55 Total: -23.53 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.49 Total: -82.10 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -3.26 Total: -45.87 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.54 -0.53 -69.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930711430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.260 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds