Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00306 * 2 1 4 4 C 1.38754 * 120.14342 * 359.97438 * 3 2 1 5 5 C 1.37911 * 119.81042 * 180.08705 * 4 3 2 6 6 C 1.38780 * 120.45509 * 0.03413 * 5 4 3 7 7 C 1.37878 * 119.81354 * 359.84374 * 6 5 4 8 8 C 1.38520 * 120.14752 * 180.02562 * 3 2 1 9 9 C 1.50729 * 121.65830 * 180.23652 * 7 6 5 10 10 C 1.52894 * 109.97111 * 343.08853 * 9 7 6 11 11 N 1.47170 * 108.50173 * 50.37830 * 10 9 7 12 12 C 1.46898 * 110.99674 * 52.12067 * 11 10 9 13 13 C 1.53001 * 109.46893 * 170.00265 * 12 11 10 14 14 H 1.08999 * 109.47164 * 60.00204 * 13 12 11 15 15 O 1.42903 * 109.47171 * 299.99938 * 13 12 11 16 16 C 1.50707 * 109.47316 * 180.02562 * 13 12 11 17 17 H 1.07995 * 119.99310 * 359.97438 * 16 13 12 18 18 C 1.37872 * 119.99931 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00169 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99871 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46985 * 89.99971 * 20 18 16 22 22 H 1.48502 * 109.47121 * 210.00067 * 20 18 16 23 23 H 1.48504 * 109.47079 * 330.00105 * 20 18 16 24 24 C 1.46628 * 110.23901 * 288.71369 * 11 10 9 25 25 H 1.09003 * 109.47121 * 299.99834 * 1 2 3 26 26 H 1.09005 * 109.47490 * 60.00009 * 1 2 3 27 27 H 1.09002 * 109.47658 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.09385 * 0.07022 * 4 3 2 29 29 H 1.07997 * 119.77678 * 180.02562 * 5 4 3 30 30 H 1.08007 * 119.84201 * 359.95154 * 8 3 2 31 31 H 1.08994 * 109.39619 * 222.93554 * 9 7 6 32 32 H 1.09008 * 109.38732 * 103.23510 * 9 7 6 33 33 H 1.08998 * 109.63516 * 290.67912 * 10 9 7 34 34 H 1.09000 * 109.63413 * 170.07783 * 10 9 7 35 35 H 1.08999 * 109.47049 * 50.00399 * 12 11 10 36 36 H 1.08997 * 109.47646 * 290.00448 * 12 11 10 37 37 H 0.96700 * 114.00311 * 300.00378 * 15 13 12 38 38 H 0.96998 * 119.99752 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.30089 * 172.90712 * 24 11 10 40 40 H 1.08999 * 109.30006 * 292.28156 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2933 2.3765 -0.0005 5 6 1.9266 3.6016 -0.0024 6 6 3.3123 3.6771 -0.0044 7 6 4.0619 2.5199 -0.0013 8 6 3.4291 1.2868 -0.0005 9 6 5.5688 2.5534 0.0020 10 6 6.0612 3.9390 -0.4166 11 7 5.3598 4.9482 0.3930 12 6 5.4721 4.6444 1.8258 13 6 4.9542 5.8311 2.6409 14 1 3.9099 6.0164 2.3895 15 8 5.7303 6.9921 2.3379 16 6 5.0700 5.5197 4.1109 17 1 5.4723 4.5702 4.4316 18 6 4.6622 6.4470 5.0462 19 7 4.1728 7.6035 4.6555 20 14 4.8051 6.0608 6.8682 21 1 6.1303 6.5086 7.3668 22 1 3.7317 6.7697 7.6102 23 1 4.6668 4.5969 7.0762 24 6 3.9548 5.0397 -0.0162 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2145 2.3245 0.0002 29 1 1.3402 4.5085 -0.0023 30 1 4.0171 0.3809 -0.0002 31 1 5.9490 1.8081 -0.6965 32 1 5.9336 2.3273 1.0040 33 1 5.8442 4.1013 -1.4724 34 1 7.1350 4.0135 -0.2448 35 1 6.5165 4.4591 2.0772 36 1 4.8802 3.7588 2.0570 37 1 6.6720 6.8986 2.5367 38 1 3.8856 8.2557 5.3136 39 1 3.4211 5.6954 0.6719 40 1 3.8988 5.4558 -1.0220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931016584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = -57.181841 kcal Electronic energy + Delta-G solvation = -21926.301866 eV Core-core repulsion = 18706.203934 eV Total energy + Delta-G solvation = -3220.097932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.49850 -38.95539 -36.46357 -34.94013 -32.53965 -32.02947 -30.38456 -29.41012 -28.36880 -26.99762 -25.19519 -23.87272 -22.43745 -22.10837 -20.84250 -18.83420 -17.63234 -16.86691 -16.30620 -15.80367 -15.64563 -14.85243 -14.79649 -14.60007 -14.43898 -13.95791 -13.73959 -13.56893 -12.98027 -12.95033 -12.52314 -12.31547 -12.21669 -11.92600 -11.77147 -11.38690 -11.08781 -11.01262 -10.90517 -10.75481 -10.60070 -10.50546 -10.31565 -9.99732 -8.92601 -8.65391 -8.53173 -8.06630 -7.88704 -7.63116 -5.96776 -4.14446 1.43797 1.55780 3.23896 3.29504 3.36411 3.39340 3.83389 4.37062 4.57996 4.78617 4.86745 5.01433 5.04036 5.10187 5.21568 5.30910 5.31428 5.32085 5.40851 5.51756 5.69317 5.81939 5.91378 5.99434 6.08370 6.15485 6.20049 6.30760 6.37203 6.43017 6.49906 6.61511 6.76221 6.88936 6.93811 7.43282 7.55265 7.64662 7.82307 7.92731 8.25300 8.89363 9.50842 9.67409 11.07416 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.005182 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.699594 B = 5402.258363 C = 6227.147505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.117 3.883 4 C -0.209 4.209 5 C -0.073 4.073 6 C -0.134 4.134 7 C -0.036 4.036 8 C -0.153 4.153 9 C -0.119 4.119 10 C 0.051 3.949 11 N -0.514 5.514 12 C 0.026 3.974 13 C 0.238 3.762 14 H 0.053 0.947 15 O -0.555 6.555 16 C -0.572 4.572 17 H 0.053 0.947 18 C 0.081 3.919 19 N -0.859 5.859 20 Si 0.886 3.114 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.092 3.908 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.342 0.658 38 H 0.260 0.740 39 H 0.096 0.904 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 -11.850 -11.408 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.073 3.927 4 C -0.227 4.227 5 C -0.091 4.091 6 C -0.136 4.136 7 C -0.036 4.036 8 C -0.172 4.172 9 C -0.158 4.158 10 C -0.077 4.077 11 N -0.235 5.235 12 C -0.101 4.101 13 C 0.180 3.820 14 H 0.071 0.929 15 O -0.357 6.357 16 C -0.611 4.611 17 H 0.071 0.929 18 C -0.125 4.125 19 N -0.495 5.495 20 Si 0.714 3.286 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.036 4.036 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.185 0.815 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.241 -11.147 -11.626 16.655 hybrid contribution -0.269 -1.316 1.518 2.027 sum -4.510 -12.463 -10.107 16.668 Atomic orbital electron populations 1.23004 0.78728 1.03553 1.01344 1.86030 1.21127 1.27236 1.89153 1.18861 0.92241 0.83956 0.97667 1.21120 0.99692 0.92423 1.09501 1.20911 0.93982 0.97119 0.97125 1.20490 0.93807 0.96918 1.02363 1.19328 0.95520 0.91527 0.97231 1.20260 0.91266 0.97919 1.07746 1.21170 0.91229 1.00400 1.02954 1.22244 0.99127 0.88333 0.98011 1.62671 1.10884 1.44785 1.05139 1.23126 1.00619 1.00477 0.85925 1.19311 0.91535 0.80474 0.90695 0.92902 1.86553 1.20697 1.40657 1.87759 1.21654 1.45084 1.02360 0.91956 0.92850 1.25000 0.94035 0.94817 0.98678 1.70080 1.39735 1.06106 1.33576 0.86715 0.77857 0.78458 0.85592 1.20492 1.21143 1.19932 1.21153 0.88964 0.91793 1.01737 0.92667 0.92839 0.88537 0.85772 0.85625 0.85708 0.90635 0.89934 0.91114 0.90373 0.91996 0.94757 0.81476 0.93060 0.88624 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.82 101.05 0.99 1.25 16 2 O -0.32 -4.27 10.50 -19.43 -0.20 -4.47 16 3 C 0.12 1.71 6.68 -39.29 -0.26 1.45 16 4 C -0.21 -2.90 9.04 -39.51 -0.36 -3.26 16 5 C -0.07 -1.09 9.64 -39.50 -0.38 -1.47 16 6 C -0.13 -2.18 5.19 -104.58 -0.54 -2.72 16 7 C -0.04 -0.55 5.05 -104.61 -0.53 -1.08 16 8 C -0.15 -2.29 9.59 -39.35 -0.38 -2.66 16 9 C -0.12 -1.65 5.16 -27.92 -0.14 -1.80 16 10 C 0.05 0.75 6.02 -3.73 -0.02 0.72 16 11 N -0.51 -9.28 4.88 -236.18 -1.15 -10.43 16 12 C 0.03 0.54 3.52 -3.82 -0.01 0.52 16 13 C 0.24 6.04 2.74 -27.88 -0.08 5.96 16 14 H 0.05 1.48 6.39 -51.93 -0.33 1.15 16 15 O -0.56 -14.50 12.59 -35.23 -0.44 -14.94 16 16 C -0.57 -15.84 8.76 -34.44 -0.30 -16.14 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 19 N -0.86 -25.55 12.84 55.43 0.71 -24.84 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 24 C 0.09 1.58 5.43 -5.15 -0.03 1.56 16 25 H 0.05 0.47 7.67 -51.93 -0.40 0.08 16 26 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.12 1.40 6.32 -52.49 -0.33 1.07 16 29 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.21 7.06 -51.92 -0.37 0.85 16 33 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 36 H 0.03 0.73 5.91 -51.93 -0.31 0.43 16 37 H 0.34 8.05 9.04 45.56 0.41 8.47 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.10 1.86 6.09 -51.93 -0.32 1.55 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -31.85 320.71 -8.37 -40.22 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -4.95 Total: 8.76 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.14 Total: -15.49 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.44 Total: -35.27 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.65 Total: -19.41 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.85 -8.37 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931016584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.958 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds