Wall clock time and date at job start Mon Mar 30 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00306 * 2 1 4 4 C 1.38754 * 120.14342 * 359.97438 * 3 2 1 5 5 C 1.37911 * 119.81042 * 180.08705 * 4 3 2 6 6 C 1.38780 * 120.45509 * 0.03413 * 5 4 3 7 7 C 1.37878 * 119.81354 * 359.84374 * 6 5 4 8 8 C 1.38520 * 120.14752 * 180.02562 * 3 2 1 9 9 C 1.50729 * 121.65830 * 180.23652 * 7 6 5 10 10 C 1.52894 * 109.97111 * 343.08853 * 9 7 6 11 11 N 1.47170 * 108.50173 * 50.37830 * 10 9 7 12 12 C 1.46898 * 110.99674 * 52.12067 * 11 10 9 13 13 C 1.53001 * 109.46893 * 170.00265 * 12 11 10 14 14 H 1.08999 * 109.47164 * 60.00204 * 13 12 11 15 15 O 1.42903 * 109.47171 * 299.99938 * 13 12 11 16 16 C 1.50707 * 109.47316 * 180.02562 * 13 12 11 17 17 H 1.07995 * 119.99310 * 359.97438 * 16 13 12 18 18 C 1.37872 * 119.99931 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00169 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99871 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46985 * 89.99971 * 20 18 16 22 22 H 1.48502 * 109.47121 * 210.00067 * 20 18 16 23 23 H 1.48504 * 109.47079 * 330.00105 * 20 18 16 24 24 C 1.46628 * 110.23901 * 288.71369 * 11 10 9 25 25 H 1.09003 * 109.47121 * 299.99834 * 1 2 3 26 26 H 1.09005 * 109.47490 * 60.00009 * 1 2 3 27 27 H 1.09002 * 109.47658 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.09385 * 0.07022 * 4 3 2 29 29 H 1.07997 * 119.77678 * 180.02562 * 5 4 3 30 30 H 1.08007 * 119.84201 * 359.95154 * 8 3 2 31 31 H 1.08994 * 109.39619 * 222.93554 * 9 7 6 32 32 H 1.09008 * 109.38732 * 103.23510 * 9 7 6 33 33 H 1.08998 * 109.63516 * 290.67912 * 10 9 7 34 34 H 1.09000 * 109.63413 * 170.07783 * 10 9 7 35 35 H 1.08999 * 109.47049 * 50.00399 * 12 11 10 36 36 H 1.08997 * 109.47646 * 290.00448 * 12 11 10 37 37 H 0.96700 * 114.00311 * 300.00378 * 15 13 12 38 38 H 0.96998 * 119.99752 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.30089 * 172.90712 * 24 11 10 40 40 H 1.08999 * 109.30006 * 292.28156 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2933 2.3765 -0.0005 5 6 1.9266 3.6016 -0.0024 6 6 3.3123 3.6771 -0.0044 7 6 4.0619 2.5199 -0.0013 8 6 3.4291 1.2868 -0.0005 9 6 5.5688 2.5534 0.0020 10 6 6.0612 3.9390 -0.4166 11 7 5.3598 4.9482 0.3930 12 6 5.4721 4.6444 1.8258 13 6 4.9542 5.8311 2.6409 14 1 3.9099 6.0164 2.3895 15 8 5.7303 6.9921 2.3379 16 6 5.0700 5.5197 4.1109 17 1 5.4723 4.5702 4.4316 18 6 4.6622 6.4470 5.0462 19 7 4.1728 7.6035 4.6555 20 14 4.8051 6.0608 6.8682 21 1 6.1303 6.5086 7.3668 22 1 3.7317 6.7697 7.6102 23 1 4.6668 4.5969 7.0762 24 6 3.9548 5.0397 -0.0162 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2145 2.3245 0.0002 29 1 1.3402 4.5085 -0.0023 30 1 4.0171 0.3809 -0.0002 31 1 5.9490 1.8081 -0.6965 32 1 5.9336 2.3273 1.0040 33 1 5.8442 4.1013 -1.4724 34 1 7.1350 4.0135 -0.2448 35 1 6.5165 4.4591 2.0772 36 1 4.8802 3.7588 2.0570 37 1 6.6720 6.8986 2.5367 38 1 3.8856 8.2557 5.3136 39 1 3.4211 5.6954 0.6719 40 1 3.8988 5.4558 -1.0220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931016584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:04 Heat of formation + Delta-G solvation = -80.351212 kcal Electronic energy + Delta-G solvation = -21927.306566 eV Core-core repulsion = 18706.203934 eV Total energy + Delta-G solvation = -3221.102632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65229 -40.09616 -37.94128 -36.61076 -34.20399 -33.72267 -31.69214 -30.62689 -29.93133 -28.01311 -26.93820 -25.20514 -23.80765 -23.26755 -22.46531 -20.17535 -19.03805 -18.54028 -17.41882 -17.03153 -16.68277 -16.62826 -16.33308 -16.12108 -15.85936 -15.55298 -15.05583 -14.79321 -14.39081 -14.30345 -14.11108 -13.55005 -13.25954 -13.11200 -12.99391 -12.88904 -12.85615 -12.79694 -12.48651 -12.19089 -12.11515 -11.84218 -11.67091 -11.54893 -10.92635 -10.67578 -10.06314 -9.77185 -9.09396 -9.01954 -8.11769 -6.37155 0.31412 0.40274 1.39890 1.40083 1.50826 2.33127 2.38948 2.69247 3.13119 3.17729 3.72504 3.81202 3.93951 4.09526 4.17803 4.19330 4.31904 4.35218 4.36634 4.45070 4.47488 4.57839 4.62755 4.69019 4.75002 4.84837 4.92209 4.95456 5.02800 5.11046 5.14681 5.26725 5.36721 5.58718 5.64390 5.77761 5.80824 6.05749 6.24865 6.30728 6.42325 6.76227 7.36883 7.66576 8.92684 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.005182 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.699594 B = 5402.258363 C = 6227.147505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.114 3.886 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.156 4.156 7 C -0.045 4.045 8 C -0.165 4.165 9 C -0.114 4.114 10 C 0.052 3.948 11 N -0.527 5.527 12 C 0.051 3.949 13 C 0.239 3.761 14 H 0.019 0.981 15 O -0.570 6.570 16 C -0.587 4.587 17 H 0.055 0.945 18 C 0.028 3.972 19 N -0.898 5.898 20 Si 0.956 3.044 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.268 1.268 24 C 0.098 3.902 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.122 0.878 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.352 0.648 38 H 0.261 0.739 39 H 0.062 0.938 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 -13.660 -11.624 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.158 4.158 7 C -0.046 4.046 8 C -0.184 4.184 9 C -0.152 4.152 10 C -0.076 4.076 11 N -0.247 5.247 12 C -0.077 4.077 13 C 0.181 3.819 14 H 0.036 0.964 15 O -0.373 6.373 16 C -0.626 4.626 17 H 0.073 0.927 18 C -0.174 4.174 19 N -0.536 5.536 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.031 4.031 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.140 0.860 28 H 0.167 0.833 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.103 -12.978 -11.855 18.050 hybrid contribution -0.387 -0.791 1.518 1.755 sum -4.490 -13.769 -10.337 17.793 Atomic orbital electron populations 1.23333 0.76538 1.05593 1.02108 1.86021 1.23416 1.26530 1.88843 1.19044 0.92490 0.84679 0.96915 1.21370 1.01025 0.91738 1.08694 1.21118 0.93869 0.98132 0.97193 1.20475 0.94533 0.96543 1.04224 1.19532 0.96422 0.91472 0.97127 1.20479 0.91871 0.98166 1.07846 1.21156 0.90245 1.00667 1.03169 1.22356 0.99376 0.87706 0.98119 1.62586 1.11691 1.46602 1.03870 1.22632 1.00207 0.97568 0.87318 1.19152 0.90112 0.81866 0.90748 0.96371 1.86497 1.21544 1.41446 1.87835 1.22044 1.44712 1.02373 0.93436 0.92688 1.25843 0.93568 0.94566 1.03424 1.70218 1.40953 1.07225 1.35163 0.85621 0.78098 0.78420 0.79809 1.19550 1.20833 1.19259 1.21005 0.88434 0.92201 1.01445 0.92340 0.91568 0.86006 0.83321 0.84885 0.84381 0.87764 0.90839 0.89538 0.89034 0.91356 0.95705 0.80352 0.93026 0.91988 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.82 113.37 1.11 1.40 16 2 O -0.33 -8.21 10.50 -92.44 -0.97 -9.18 16 3 C 0.11 3.17 6.68 22.46 0.15 3.32 16 4 C -0.21 -5.58 9.04 22.32 0.20 -5.38 16 5 C -0.08 -2.53 9.64 22.32 0.22 -2.31 16 6 C -0.16 -5.07 5.19 -19.84 -0.10 -5.18 16 7 C -0.05 -1.36 5.05 -19.86 -0.10 -1.46 16 8 C -0.17 -4.71 9.59 22.42 0.22 -4.49 16 9 C -0.11 -2.96 5.16 29.82 0.15 -2.81 16 10 C 0.05 1.42 6.02 86.22 0.52 1.94 16 11 N -0.53 -18.91 4.88 -901.13 -4.40 -23.31 16 12 C 0.05 2.12 3.52 86.30 0.30 2.42 16 13 C 0.24 12.48 2.74 29.85 0.08 12.56 16 14 H 0.02 1.09 6.39 -2.39 -0.02 1.07 16 15 O -0.57 -30.47 12.59 -148.98 -1.88 -32.34 16 16 C -0.59 -32.92 8.76 25.60 0.22 -32.70 16 17 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 18 C 0.03 1.61 5.40 84.65 0.46 2.07 16 19 N -0.90 -54.47 12.84 21.45 0.28 -54.20 16 20 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.10 3.43 5.43 85.59 0.46 3.89 16 25 H 0.06 0.88 7.67 -2.39 -0.02 0.86 16 26 H 0.07 0.87 7.67 -2.38 -0.02 0.85 16 27 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.15 3.07 6.32 -2.91 -0.02 3.06 16 29 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 2.06 7.06 -2.38 -0.02 2.04 16 33 H 0.09 2.10 8.05 -2.39 -0.02 2.08 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.73 8.08 -2.39 -0.02 2.71 16 36 H 0.02 1.08 5.91 -2.39 -0.01 1.06 16 37 H 0.35 16.80 9.04 -74.06 -0.67 16.13 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.06 2.57 6.09 -2.39 -0.01 2.56 16 40 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -68.70 320.71 -0.67 -69.37 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.38 Total: 30.40 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.90 Total: -26.73 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -4.13 Total: -77.51 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -2.85 Total: -41.53 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.70 -0.67 -69.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931016584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.977 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds