Wall clock time and date at job start Mon Mar 30 2020 01:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29415 * 120.00166 * 2 1 4 4 O 1.41601 * 119.99880 * 0.02562 * 3 2 1 5 5 C 1.42899 * 114.00318 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46960 * 59.99628 * 5 4 3 7 7 C 1.53004 * 109.47330 * 179.97438 * 5 4 3 8 8 C 1.52997 * 109.47009 * 299.99539 * 5 4 3 9 9 C 1.47495 * 120.00194 * 179.97438 * 2 1 3 10 10 C 1.39753 * 120.08034 * 180.02562 * 9 2 1 11 11 C 1.37718 * 119.91792 * 180.02562 * 10 9 2 12 12 C 1.39071 * 120.08557 * 359.97438 * 11 10 9 13 13 O 1.35635 * 119.92472 * 180.02562 * 12 11 10 14 14 C 1.34810 * 117.00114 * 5.55101 * 13 12 11 15 15 H 1.08005 * 119.99407 * 354.94821 * 14 13 12 16 16 C 1.38660 * 120.00405 * 174.94588 * 14 13 12 17 17 N 1.31549 * 120.00099 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00353 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46825 * 89.99917 * 18 16 14 20 20 H 1.48495 * 109.47239 * 209.99638 * 18 16 14 21 21 H 1.48501 * 109.46645 * 330.00028 * 18 16 14 22 22 C 1.39077 * 120.15629 * 0.27498 * 12 11 10 23 23 C 1.37722 * 120.08376 * 359.45146 * 22 12 11 24 24 H 1.09003 * 109.47134 * 269.99542 * 1 2 3 25 25 H 1.08992 * 109.47471 * 29.99997 * 1 2 3 26 26 H 1.09005 * 109.47057 * 150.00126 * 1 2 3 27 27 H 1.09005 * 109.47459 * 59.99977 * 6 5 4 28 28 H 1.09005 * 109.47192 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.47220 * 300.00235 * 6 5 4 30 30 H 1.09002 * 109.46642 * 60.00116 * 7 5 4 31 31 H 1.08994 * 109.47172 * 179.97438 * 7 5 4 32 32 H 1.08997 * 109.47162 * 300.00300 * 7 5 4 33 33 H 1.09004 * 109.46995 * 60.00135 * 8 5 4 34 34 H 1.09005 * 109.46914 * 179.97438 * 8 5 4 35 35 H 1.08993 * 109.47138 * 300.00129 * 8 5 4 36 36 H 1.08005 * 120.04032 * 0.02562 * 10 9 2 37 37 H 1.08001 * 119.95850 * 179.97438 * 11 10 9 38 38 H 0.96997 * 120.00558 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.95831 * 179.70147 * 22 12 11 40 40 H 1.08002 * 120.04690 * 180.25049 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1540 1.1207 0.0000 4 8 1.4460 2.3471 0.0005 5 6 2.2859 3.5032 0.0011 6 6 3.1692 3.4923 -1.2481 7 6 1.4187 4.7637 0.0010 8 6 3.1691 3.4913 1.2503 9 6 2.2445 -1.2773 0.0006 10 6 3.6420 -1.2792 0.0011 11 6 4.3272 -2.4738 0.0011 12 6 3.6303 -3.6773 0.0011 13 8 4.3085 -4.8519 0.0016 14 6 5.6498 -4.7842 0.1183 15 1 6.1435 -3.8236 0.1238 16 6 6.3956 -5.9477 0.2314 17 7 5.7943 -7.1177 0.2253 18 14 8.2542 -5.8537 0.3938 19 1 8.6221 -5.7733 1.8303 20 1 8.8655 -7.0666 -0.2064 21 1 8.7524 -4.6466 -0.3132 22 6 2.2395 -3.6793 -0.0047 23 6 1.5475 -2.4886 0.0010 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 2.5400 3.5007 -2.1382 28 1 3.8103 4.3740 -1.2476 29 1 3.7871 2.5944 -1.2485 30 1 0.7891 4.7715 0.8908 31 1 2.0593 5.6455 0.0018 32 1 0.7897 4.7719 -0.8892 33 1 3.7870 2.5934 1.2500 34 1 3.8101 4.3730 1.2505 35 1 2.5398 3.4990 2.1402 36 1 4.1839 -0.3450 0.0015 37 1 5.4072 -2.4761 0.0011 38 1 6.3160 -7.9316 0.3040 39 1 1.7015 -4.6158 -0.0095 40 1 0.4674 -2.4909 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116409244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:14 Heat of formation + Delta-G solvation = -4.294968 kcal Electronic energy + Delta-G solvation = -20826.881050 eV Core-core repulsion = 17609.076465 eV Total energy + Delta-G solvation = -3217.804585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.19118 -38.32295 -37.06467 -35.04471 -32.63124 -32.14867 -30.47517 -28.52512 -27.90885 -27.32990 -27.30290 -25.50209 -22.38671 -21.83342 -20.25180 -18.78239 -18.04769 -17.03710 -16.18725 -15.98000 -14.99346 -14.78896 -14.45729 -14.19337 -13.92878 -13.86537 -13.63366 -13.61043 -12.89282 -12.77625 -12.60094 -12.38923 -12.25535 -11.88738 -11.81679 -11.76931 -11.74701 -11.52399 -11.12222 -11.07576 -11.03648 -10.67794 -10.66682 -10.50325 -9.54273 -9.33404 -9.28094 -8.81779 -8.30364 -7.17264 -6.58480 -4.14917 1.53426 2.18830 2.93607 3.01339 3.08086 3.12431 3.13434 3.87408 4.54503 4.83138 4.83770 4.89882 4.98734 5.00960 5.14989 5.16174 5.43243 5.44198 5.52361 5.59587 5.66381 5.66586 5.68393 5.73922 5.86329 5.91059 5.96605 6.11229 6.18053 6.27717 6.27803 6.36751 6.54803 6.73243 6.85834 6.95613 7.18854 7.24816 7.32442 7.68075 7.87034 7.99674 8.86768 9.53927 10.58523 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025280 B = 0.003524 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.322749 B = 7943.005690 C = 8850.588752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.198 3.802 3 N -0.360 5.360 4 O -0.241 6.241 5 C 0.123 3.877 6 C -0.166 4.166 7 C -0.137 4.137 8 C -0.166 4.166 9 C -0.165 4.165 10 C -0.024 4.024 11 C -0.243 4.243 12 C 0.168 3.832 13 O -0.166 6.166 14 C -0.393 4.393 15 H 0.096 0.904 16 C 0.041 3.959 17 N -0.855 5.855 18 Si 0.943 3.057 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.197 4.197 23 C -0.041 4.041 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.273 0.727 39 H 0.122 0.878 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 16.533 -0.209 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 N -0.110 5.110 4 O -0.254 6.254 5 C 0.084 3.916 6 C -0.224 4.224 7 C -0.196 4.196 8 C -0.223 4.223 9 C -0.168 4.168 10 C -0.044 4.044 11 C -0.263 4.263 12 C 0.112 3.888 13 O -0.067 6.067 14 C -0.468 4.468 15 H 0.114 0.886 16 C -0.164 4.164 17 N -0.489 5.489 18 Si 0.767 3.233 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.190 1.190 22 C -0.217 4.217 23 C -0.062 4.062 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.140 0.860 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.869 16.548 -0.218 17.559 hybrid contribution 0.322 -0.022 0.091 0.336 sum -5.547 16.526 -0.127 17.433 Atomic orbital electron populations 1.21264 0.92699 1.03461 1.03149 1.23194 0.93743 0.91086 0.90790 1.76800 1.23479 0.90858 1.19912 1.89786 1.30990 1.11032 1.93641 1.21330 0.90971 0.84354 0.94966 1.22285 1.00075 1.02624 0.97386 1.21805 0.99978 0.95066 1.02735 1.22281 1.00065 1.02620 0.97382 1.17700 0.92679 0.88914 1.17517 1.20916 0.92771 0.97208 0.93465 1.21113 1.00793 0.91775 1.12609 1.19569 0.91711 0.86386 0.91173 1.83930 1.21263 1.25252 1.76289 1.21436 0.78366 0.94981 1.52055 0.88646 1.25356 1.00832 0.94106 0.96132 1.70029 1.36691 0.97621 1.44550 0.85671 0.80097 0.78521 0.78973 1.19692 1.20124 1.18998 1.20103 0.91395 0.98040 1.12130 1.20723 0.98530 0.90660 0.96239 0.90404 0.90938 0.90467 0.92610 0.92287 0.91212 0.91996 0.90841 0.92000 0.91210 0.92292 0.92603 0.86481 0.85195 0.91727 0.85969 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.27 36.00 0.33 -1.55 16 2 C 0.20 3.18 7.11 -79.84 -0.57 2.61 16 3 N -0.36 -5.92 8.82 35.07 0.31 -5.61 16 4 O -0.24 -3.66 9.67 -11.47 -0.11 -3.77 16 5 C 0.12 1.51 1.19 -90.62 -0.11 1.40 16 6 C -0.17 -1.95 8.53 37.16 0.32 -1.63 16 7 C -0.14 -1.29 8.84 37.16 0.33 -0.96 16 8 C -0.17 -1.95 8.53 37.16 0.32 -1.63 16 9 C -0.17 -2.92 5.87 -104.99 -0.62 -3.54 16 10 C -0.02 -0.45 9.57 -39.21 -0.38 -0.82 16 11 C -0.24 -5.18 9.15 -39.46 -0.36 -5.55 16 12 C 0.17 3.90 6.65 -38.96 -0.26 3.64 16 13 O -0.17 -4.56 9.75 0.46 0.00 -4.55 16 14 C -0.39 -10.58 9.48 30.89 0.29 -10.29 16 15 H 0.10 2.38 5.19 -52.48 -0.27 2.10 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -24.24 13.67 55.48 0.76 -23.48 16 18 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.20 -3.94 9.97 -39.46 -0.39 -4.33 16 23 C -0.04 -0.70 9.35 -39.20 -0.37 -1.07 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.92 7.35 -51.93 -0.38 0.54 16 26 H 0.08 0.87 6.47 -51.93 -0.34 0.53 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.94 7.65 -51.93 -0.40 0.55 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 2.08 7.55 -52.48 -0.40 1.68 16 37 H 0.13 2.76 5.62 -52.49 -0.29 2.46 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 40 H 0.12 1.62 6.35 -52.49 -0.33 1.29 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -29.44 337.13 -6.28 -35.72 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.75 Total: 4.52 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -1.55 Total: -22.72 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 1.07 Total: -29.09 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.11 Total: -8.32 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.44 -6.28 -35.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116409244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.426 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds