Wall clock time and date at job start Mon Mar 30 2020 01:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46908 * 110.99855 * 2 1 4 4 C 1.50702 * 109.46924 * 66.04639 * 3 2 1 5 5 C 1.38298 * 119.93116 * 269.72262 * 4 3 2 6 6 C 1.38101 * 120.06916 * 179.72401 * 5 4 3 7 7 C 1.38880 * 119.93007 * 0.57389 * 6 5 4 8 8 O 1.35750 * 120.06847 * 179.68280 * 7 6 5 9 9 C 1.34825 * 116.99901 * 174.49053 * 8 7 6 10 10 H 1.08004 * 120.00181 * 5.04694 * 9 8 7 11 11 C 1.38659 * 120.00045 * 185.05605 * 9 8 7 12 12 N 1.31550 * 119.99874 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99879 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47124 * 60.00133 * 13 11 9 15 15 H 1.48503 * 109.46736 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47189 * 300.00019 * 13 11 9 17 17 C 1.38885 * 119.86093 * 359.70140 * 7 6 5 18 18 C 1.38101 * 119.93180 * 0.02562 * 17 7 6 19 19 C 1.46896 * 111.00328 * 236.04979 * 2 1 3 20 20 C 1.52999 * 109.46940 * 293.95461 * 19 2 1 21 21 C 1.54036 * 113.81781 * 273.50687 * 20 19 2 22 22 O 1.44442 * 85.42841 * 223.23607 * 21 20 19 23 23 C 1.44179 * 93.37765 * 24.08736 * 22 21 20 24 24 H 1.08995 * 109.47373 * 183.95309 * 1 2 3 25 25 H 1.09003 * 109.47451 * 303.95502 * 1 2 3 26 26 H 1.08999 * 109.47266 * 63.95280 * 1 2 3 27 27 H 1.08999 * 109.46650 * 186.04005 * 3 2 1 28 28 H 1.08994 * 109.47465 * 306.04673 * 3 2 1 29 29 H 1.07999 * 119.96453 * 359.97438 * 5 4 3 30 30 H 1.08005 * 120.03385 * 180.27530 * 6 5 4 31 31 H 0.96996 * 119.99854 * 179.97438 * 12 11 9 32 32 H 1.07999 * 120.03044 * 179.97438 * 17 7 6 33 33 H 1.07999 * 119.96690 * 179.97438 * 18 17 7 34 34 H 1.08994 * 109.47248 * 53.94966 * 19 2 1 35 35 H 1.08995 * 109.47316 * 173.95432 * 19 2 1 36 36 H 1.08999 * 113.00197 * 45.32877 * 20 19 2 37 37 H 1.09005 * 113.86455 * 337.34306 * 21 20 19 38 38 H 1.08998 * 113.86830 * 109.04239 * 21 20 19 39 39 H 1.09005 * 113.86258 * 221.77118 * 23 22 21 40 40 H 1.08999 * 113.98419 * 90.07840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2985 5 6 0.4528 2.7539 1.4047 6 6 0.1187 3.3693 2.5950 7 6 0.9787 3.2881 3.6824 8 8 0.6561 3.8974 4.8517 9 6 1.4773 3.6847 5.8997 10 1 2.3886 3.1207 5.7659 11 6 1.1518 4.1898 7.1493 12 7 0.0419 4.8770 7.3122 13 14 2.2892 3.8944 8.6014 14 1 3.6224 4.4816 8.3133 15 1 1.7191 4.5334 9.8146 16 1 2.4305 2.4340 8.8304 17 6 2.1698 2.5824 3.5708 18 6 2.4955 1.9644 2.3795 19 6 1.9954 -0.7659 -1.1376 20 6 1.6314 -2.2425 -0.9704 21 6 2.6434 -3.0410 -0.1272 22 8 2.4993 -4.0657 -1.1350 23 6 2.0773 -3.1302 -2.1476 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3634 0.5740 0.8524 26 1 -0.3634 0.4513 -0.9233 27 1 3.0796 1.3444 -0.1081 28 1 1.5611 1.9274 -0.8308 29 1 -0.2132 2.8211 0.5571 30 1 -0.8083 3.9173 2.6786 31 1 -0.1860 5.2300 8.1864 32 1 2.8408 2.5178 4.4145 33 1 3.4217 1.4159 2.2920 34 1 1.5611 -0.3872 -2.0627 35 1 3.0797 -0.6610 -1.1756 36 1 0.5939 -2.3944 -0.6729 37 1 3.6372 -2.5944 -0.0913 38 1 2.2685 -3.3303 0.8545 39 1 1.2542 -3.4901 -2.7649 40 1 2.8962 -2.7099 -2.7314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137120605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:27 Heat of formation + Delta-G solvation = -27.245007 kcal Electronic energy + Delta-G solvation = -20826.315950 eV Core-core repulsion = 17607.516176 eV Total energy + Delta-G solvation = -3218.799774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30321 -40.78655 -39.00513 -37.32037 -34.31786 -32.49834 -31.81249 -30.61212 -28.20422 -27.38698 -27.31946 -26.10307 -23.60204 -23.18445 -21.62312 -20.84191 -19.82471 -18.80461 -17.46119 -16.93506 -16.90689 -16.45420 -16.29488 -16.17652 -15.80296 -15.63217 -15.44471 -15.03385 -14.50528 -14.29227 -14.09626 -13.72175 -13.56285 -13.50082 -12.96299 -12.76449 -12.65575 -12.47623 -12.30780 -12.22375 -12.13080 -12.03352 -11.63611 -11.33315 -11.15173 -10.77520 -10.56658 -9.73606 -9.21601 -8.85217 -8.46402 -6.14459 0.62598 0.70681 1.35248 1.45958 1.51486 2.18619 2.72114 2.84630 3.01905 3.26373 3.54064 3.59539 3.87082 4.03683 4.09809 4.22237 4.30985 4.36711 4.45387 4.47752 4.51090 4.59765 4.62784 4.69504 4.72188 4.81360 4.85483 4.87675 5.11290 5.12452 5.16156 5.17546 5.25120 5.32533 5.33425 5.59135 5.74218 5.83619 6.04169 6.14319 6.20425 6.29397 6.98495 7.80051 8.76825 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027301 B = 0.003247 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.370638 B = 8622.299284 C = 9234.765239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.116 3.884 4 C -0.152 4.152 5 C -0.058 4.058 6 C -0.206 4.206 7 C 0.113 3.887 8 O -0.234 6.234 9 C -0.414 4.414 10 H 0.101 0.899 11 C -0.023 4.023 12 N -0.922 5.922 13 Si 1.018 2.982 14 H -0.257 1.257 15 H -0.272 1.272 16 H -0.258 1.258 17 C -0.245 4.245 18 C -0.050 4.050 19 C 0.061 3.939 20 C -0.144 4.144 21 C 0.043 3.957 22 O -0.418 6.418 23 C 0.041 3.959 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.142 0.858 30 H 0.110 0.890 31 H 0.272 0.728 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 -12.104 -18.681 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.011 4.011 4 C -0.153 4.153 5 C -0.077 4.077 6 C -0.226 4.226 7 C 0.063 3.937 8 O -0.141 6.141 9 C -0.490 4.490 10 H 0.118 0.882 11 C -0.220 4.220 12 N -0.560 5.560 13 Si 0.837 3.163 14 H -0.181 1.181 15 H -0.196 1.196 16 H -0.182 1.182 17 C -0.264 4.264 18 C -0.068 4.068 19 C -0.067 4.067 20 C -0.163 4.163 21 C -0.034 4.034 22 O -0.338 6.338 23 C -0.036 4.036 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.160 0.840 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.257 -12.361 -18.049 22.499 hybrid contribution -0.277 0.789 0.497 0.973 sum 4.980 -11.572 -17.552 21.605 Atomic orbital electron populations 1.22463 0.87492 1.02214 1.00666 1.61942 1.08270 1.13528 1.43497 1.20825 1.00625 0.87277 0.92399 1.19589 0.95966 1.02959 0.96792 1.20848 0.96311 0.95018 0.95483 1.20426 1.00591 1.08346 0.93214 1.19942 0.94227 0.92105 0.87441 1.83936 1.50466 1.62927 1.16756 1.21782 1.03916 1.36808 0.86504 0.88174 1.26582 0.98944 0.95659 1.00840 1.70175 1.25273 1.35333 1.25264 0.84665 0.77210 0.79382 0.75075 1.18077 1.19625 1.18218 1.21258 0.98494 1.06210 1.00420 1.20902 0.99279 0.95706 0.90939 1.22219 1.00836 0.91997 0.91601 1.24295 1.01200 0.94779 0.96046 1.24094 0.99427 0.86450 0.93403 1.89688 1.89907 1.29881 1.24301 1.24141 0.99843 0.87636 0.91946 0.91027 0.92500 0.94577 0.89063 0.93207 0.84043 0.87176 0.91858 0.86606 0.84471 0.93196 0.89436 0.88329 0.89100 0.89778 0.88176 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.03 127.69 1.15 1.54 16 2 N -0.55 -10.87 4.75 -927.09 -4.41 -15.28 16 3 C 0.12 2.42 5.12 85.56 0.44 2.86 16 4 C -0.15 -4.53 4.89 -19.83 -0.10 -4.62 16 5 C -0.06 -1.89 7.90 22.25 0.18 -1.71 16 6 C -0.21 -8.76 9.99 22.39 0.22 -8.54 16 7 C 0.11 5.67 6.65 22.58 0.15 5.82 16 8 O -0.23 -14.26 9.76 -22.70 -0.22 -14.49 16 9 C -0.41 -24.39 9.49 67.92 0.64 -23.75 16 10 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 11 C -0.02 -1.32 5.49 84.84 0.47 -0.85 16 12 N -0.92 -57.16 13.67 21.61 0.30 -56.86 16 13 Si 1.02 43.18 29.55 68.60 2.03 45.20 16 14 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 17 C -0.24 -10.68 9.17 22.39 0.21 -10.48 16 18 C -0.05 -1.69 9.69 22.25 0.22 -1.48 16 19 C 0.06 0.86 4.81 86.30 0.41 1.27 16 20 C -0.14 -2.13 3.92 -10.09 -0.04 -2.17 16 21 C 0.04 0.74 8.79 72.30 0.64 1.38 16 22 O -0.42 -8.71 12.46 -148.98 -1.86 -10.56 16 23 C 0.04 0.54 8.79 72.29 0.64 1.18 16 24 H 0.07 1.31 6.31 -2.39 -0.02 1.29 16 25 H 0.06 1.41 5.91 -2.39 -0.01 1.40 16 26 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.09 1.65 7.87 -2.39 -0.02 1.63 16 28 H 0.05 0.92 8.06 -2.39 -0.02 0.90 16 29 H 0.14 3.61 8.00 -2.91 -0.02 3.59 16 30 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.12 5.18 5.64 -2.91 -0.02 5.17 16 33 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 34 H 0.05 0.60 8.12 -2.39 -0.02 0.58 16 35 H 0.09 1.08 7.67 -2.39 -0.02 1.06 16 36 H 0.10 1.58 6.30 -2.39 -0.02 1.56 16 37 H 0.09 1.39 7.92 -2.38 -0.02 1.37 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 Total: -1.00 -71.88 329.18 2.09 -69.79 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 1.03 Total: 21.75 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 5.22 Total: -39.55 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -4.11 Total: -72.14 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -2.08 Total: -25.05 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -71.88 2.09 -69.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137120605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.542 kcal (2) G-P(sol) polarization free energy of solvation -71.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds