Wall clock time and date at job start Mon Mar 30 2020 01:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47134 * 2 1 4 4 C 1.34232 * 116.99944 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00316 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99706 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47237 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47172 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47008 * 179.97438 * 8 7 6 10 10 C 1.38348 * 119.95876 * 270.29771 * 9 8 7 11 11 C 1.38305 * 120.18450 * 180.25455 * 10 9 8 12 12 C 1.38078 * 120.08432 * 359.44562 * 11 10 9 13 13 C 1.39057 * 119.90962 * 0.28009 * 12 11 10 14 14 N 1.39303 * 120.08887 * 179.97438 * 13 12 11 15 15 C 1.36858 * 119.99755 * 0.02562 * 14 13 12 16 16 H 1.07995 * 119.99670 * 359.97438 * 15 14 13 17 17 C 1.38792 * 119.99632 * 179.97438 * 15 14 13 18 18 N 1.31589 * 120.00414 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99570 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47362 * 60.00433 * 19 17 15 21 21 H 1.48504 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47398 * 299.99775 * 19 17 15 23 23 C 1.38037 * 119.95297 * 89.99901 * 9 8 7 24 24 H 1.08999 * 109.47137 * 299.99663 * 1 2 3 25 25 H 1.08998 * 109.46971 * 60.00041 * 1 2 3 26 26 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47493 * 240.00454 * 2 1 3 28 28 H 1.08998 * 109.47475 * 120.00111 * 2 1 3 29 29 H 1.08996 * 109.47367 * 59.99963 * 6 4 3 30 30 H 1.09007 * 109.47185 * 300.00401 * 6 4 3 31 31 H 1.09002 * 109.46793 * 59.99844 * 7 6 4 32 32 H 1.08998 * 109.47059 * 300.00421 * 7 6 4 33 33 H 1.08997 * 109.46913 * 60.00399 * 8 7 6 34 34 H 1.08994 * 109.47077 * 300.00027 * 8 7 6 35 35 H 1.08005 * 119.91087 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.96126 * 179.72742 * 11 10 9 37 37 H 1.07999 * 120.04371 * 180.25506 * 12 11 10 38 38 H 0.96994 * 120.00327 * 179.97438 * 14 13 12 39 39 H 0.96996 * 120.00734 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.04705 * 0.04964 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 6 5.4486 2.8575 0.0010 8 6 6.0333 4.2713 0.0010 9 6 7.5383 4.1925 0.0015 10 6 8.2275 4.1503 1.2004 11 6 9.6089 4.0833 1.2064 12 6 10.3052 4.0466 0.0146 13 6 9.6160 4.0831 -1.1926 14 7 10.3148 4.0468 -2.3971 15 6 11.6814 3.9747 -2.3935 16 1 12.2181 3.9463 -1.4567 17 6 12.3776 3.9380 -3.5936 18 7 11.7236 3.9721 -4.7350 19 14 14.2430 3.8403 -3.5885 20 1 14.6721 2.6037 -2.8871 21 1 14.7411 3.8146 -4.9873 22 1 14.7990 5.0254 -2.8874 23 6 8.2269 4.1563 -1.1942 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.5844 3.4693 0.8911 30 1 3.5850 3.4699 -0.8888 31 1 5.7845 2.3257 -0.8892 32 1 5.7846 2.3249 0.8907 33 1 5.6975 4.8034 0.8911 34 1 5.6973 4.8034 -0.8889 35 1 7.6855 4.1744 2.1343 36 1 10.1435 4.0550 2.1444 37 1 11.3837 3.9901 0.0200 38 1 9.8327 4.0719 -3.2385 39 1 12.2101 3.9468 -5.5737 40 1 7.6880 4.1851 -2.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:31 Heat of formation + Delta-G solvation = -84.980108 kcal Electronic energy + Delta-G solvation = -20108.153328 eV Core-core repulsion = 16886.849972 eV Total energy + Delta-G solvation = -3221.303356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.57257 -38.52943 -36.94700 -35.59667 -34.12858 -32.10970 -31.76384 -30.54884 -28.27789 -26.70036 -24.59120 -23.73571 -22.38064 -21.30766 -20.59997 -19.83793 -17.77835 -17.51253 -16.95004 -16.54318 -15.94811 -15.35471 -14.96220 -14.57415 -14.22541 -13.80791 -13.67039 -13.32520 -13.06749 -12.98122 -12.65322 -12.31600 -12.21620 -11.88301 -11.85892 -11.77777 -11.58244 -11.37568 -11.09469 -10.77733 -10.70160 -10.61660 -10.51971 -10.33936 -10.19420 -10.03842 -9.69451 -8.66936 -7.79824 -6.65586 -6.50864 -3.69767 2.13470 2.39027 2.57397 2.66932 3.18674 3.20595 3.20904 4.09122 4.52931 4.62830 4.68999 4.70668 4.88857 4.96789 4.97878 5.24655 5.29811 5.32478 5.44158 5.45359 5.52312 5.64176 5.72006 5.80605 5.92151 6.02646 6.18593 6.25897 6.30181 6.47082 6.51404 6.62263 7.00418 7.10328 7.29249 7.53786 7.58448 7.66694 7.68871 7.80364 8.17215 8.81389 9.42365 9.61427 10.66351 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.002792 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.752322 B =10027.503627 C =10653.054010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.459 3.541 5 O -0.504 6.504 6 C -0.113 4.113 7 C -0.102 4.102 8 C -0.073 4.073 9 C -0.030 4.030 10 C -0.243 4.243 11 C -0.063 4.063 12 C -0.227 4.227 13 C 0.213 3.787 14 N -0.566 5.566 15 C -0.299 4.299 16 H 0.100 0.900 17 C 0.017 3.983 18 N -0.897 5.897 19 Si 0.930 3.070 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 C -0.236 4.236 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.398 0.602 39 H 0.274 0.726 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.055 -2.736 8.440 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.281 6.281 4 C 0.302 3.698 5 O -0.391 6.391 6 C -0.150 4.150 7 C -0.140 4.140 8 C -0.110 4.110 9 C -0.031 4.031 10 C -0.265 4.265 11 C -0.082 4.082 12 C -0.251 4.251 13 C 0.092 3.908 14 N -0.169 5.169 15 C -0.429 4.429 16 H 0.118 0.882 17 C -0.185 4.185 18 N -0.535 5.535 19 Si 0.757 3.243 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.260 4.260 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.233 0.767 39 H 0.084 0.916 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.484 -3.080 8.061 19.498 hybrid contribution 0.800 -0.271 -0.515 0.989 sum -16.685 -3.351 7.546 18.616 Atomic orbital electron populations 1.21802 0.92706 1.02917 1.03480 1.23006 0.95282 0.80471 1.02644 1.86513 1.25056 1.32243 1.84299 1.23997 0.80261 0.93313 0.72262 1.90696 1.60296 1.43318 1.44775 1.21528 0.97540 0.90254 1.05701 1.21437 0.90316 0.97865 1.04369 1.20493 0.92891 0.95635 1.01992 1.19109 0.93201 0.97761 0.92997 1.20160 0.93892 1.16579 0.95894 1.20591 0.93967 0.97312 0.96357 1.20432 0.99154 1.14415 0.91085 1.17849 0.90686 0.95167 0.87075 1.40975 1.05906 1.65892 1.04129 1.19666 0.81669 1.47259 0.94322 0.88214 1.25260 1.00776 0.97770 0.94712 1.69671 1.36762 1.49454 0.97619 0.85911 0.81916 0.79015 0.77429 1.19838 1.20810 1.19846 1.20073 0.92187 1.16940 0.96817 0.91516 0.91472 0.90312 0.91241 0.91289 0.87738 0.87671 0.90731 0.90829 0.91535 0.91502 0.88618 0.88232 0.86999 0.76729 0.91646 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.94 10.22 -39.26 -0.40 -4.34 16 4 C 0.46 5.63 7.96 36.01 0.29 5.92 16 5 O -0.50 -7.93 15.73 -18.74 -0.29 -8.22 16 6 C -0.11 -1.12 5.81 -27.88 -0.16 -1.28 16 7 C -0.10 -1.33 4.49 -26.73 -0.12 -1.45 16 8 C -0.07 -0.98 5.34 -27.88 -0.15 -1.13 16 9 C -0.03 -0.54 5.13 -104.65 -0.54 -1.07 16 10 C -0.24 -4.45 9.70 -39.52 -0.38 -4.83 16 11 C -0.06 -1.22 10.04 -39.62 -0.40 -1.62 16 12 C -0.23 -5.03 9.30 -39.34 -0.37 -5.40 16 13 C 0.21 4.97 6.62 -83.84 -0.55 4.41 16 14 N -0.57 -14.45 5.43 -9.60 -0.05 -14.51 16 15 C -0.30 -7.93 9.56 -15.10 -0.14 -8.08 16 16 H 0.10 2.55 5.68 -52.49 -0.30 2.25 16 17 C 0.02 0.45 5.50 -17.45 -0.10 0.36 16 18 N -0.90 -24.63 13.05 55.49 0.72 -23.91 16 19 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.24 -4.88 9.55 -39.34 -0.38 -5.25 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 32 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.10 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.11 2.50 5.96 -52.49 -0.31 2.19 16 38 H 0.40 10.30 7.90 -40.82 -0.32 9.97 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -29.87 342.15 -8.25 -38.12 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.98 Total: 11.52 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.39 Total: -19.20 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.67 Total: -38.42 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.70 Total: -12.56 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.87 -8.25 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.859 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds