Wall clock time and date at job start Mon Mar 30 2020 01:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47134 * 2 1 4 4 C 1.34232 * 116.99944 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00316 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99706 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47237 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47172 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47008 * 179.97438 * 8 7 6 10 10 C 1.38348 * 119.95876 * 270.29771 * 9 8 7 11 11 C 1.38305 * 120.18450 * 180.25455 * 10 9 8 12 12 C 1.38078 * 120.08432 * 359.44562 * 11 10 9 13 13 C 1.39057 * 119.90962 * 0.28009 * 12 11 10 14 14 N 1.39303 * 120.08887 * 179.97438 * 13 12 11 15 15 C 1.36858 * 119.99755 * 0.02562 * 14 13 12 16 16 H 1.07995 * 119.99670 * 359.97438 * 15 14 13 17 17 C 1.38792 * 119.99632 * 179.97438 * 15 14 13 18 18 N 1.31589 * 120.00414 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99570 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47362 * 60.00433 * 19 17 15 21 21 H 1.48504 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47398 * 299.99775 * 19 17 15 23 23 C 1.38037 * 119.95297 * 89.99901 * 9 8 7 24 24 H 1.08999 * 109.47137 * 299.99663 * 1 2 3 25 25 H 1.08998 * 109.46971 * 60.00041 * 1 2 3 26 26 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47493 * 240.00454 * 2 1 3 28 28 H 1.08998 * 109.47475 * 120.00111 * 2 1 3 29 29 H 1.08996 * 109.47367 * 59.99963 * 6 4 3 30 30 H 1.09007 * 109.47185 * 300.00401 * 6 4 3 31 31 H 1.09002 * 109.46793 * 59.99844 * 7 6 4 32 32 H 1.08998 * 109.47059 * 300.00421 * 7 6 4 33 33 H 1.08997 * 109.46913 * 60.00399 * 8 7 6 34 34 H 1.08994 * 109.47077 * 300.00027 * 8 7 6 35 35 H 1.08005 * 119.91087 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.96126 * 179.72742 * 11 10 9 37 37 H 1.07999 * 120.04371 * 180.25506 * 12 11 10 38 38 H 0.96994 * 120.00327 * 179.97438 * 14 13 12 39 39 H 0.96996 * 120.00734 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.04705 * 0.04964 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 6 5.4486 2.8575 0.0010 8 6 6.0333 4.2713 0.0010 9 6 7.5383 4.1925 0.0015 10 6 8.2275 4.1503 1.2004 11 6 9.6089 4.0833 1.2064 12 6 10.3052 4.0466 0.0146 13 6 9.6160 4.0831 -1.1926 14 7 10.3148 4.0468 -2.3971 15 6 11.6814 3.9747 -2.3935 16 1 12.2181 3.9463 -1.4567 17 6 12.3776 3.9380 -3.5936 18 7 11.7236 3.9721 -4.7350 19 14 14.2430 3.8403 -3.5885 20 1 14.6721 2.6037 -2.8871 21 1 14.7411 3.8146 -4.9873 22 1 14.7990 5.0254 -2.8874 23 6 8.2269 4.1563 -1.1942 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.5844 3.4693 0.8911 30 1 3.5850 3.4699 -0.8888 31 1 5.7845 2.3257 -0.8892 32 1 5.7846 2.3249 0.8907 33 1 5.6975 4.8034 0.8911 34 1 5.6973 4.8034 -0.8889 35 1 7.6855 4.1744 2.1343 36 1 10.1435 4.0550 2.1444 37 1 11.3837 3.9901 0.0200 38 1 9.8327 4.0719 -3.2385 39 1 12.2101 3.9468 -5.5737 40 1 7.6880 4.1851 -2.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:31 Heat of formation + Delta-G solvation = -100.471346 kcal Electronic energy + Delta-G solvation = -20108.825078 eV Core-core repulsion = 16886.849972 eV Total energy + Delta-G solvation = -3221.975106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.50662 -40.14712 -37.90068 -37.15037 -35.47163 -33.64722 -32.75485 -31.82518 -29.93731 -27.97178 -26.44740 -24.64652 -23.38821 -22.84136 -21.61162 -21.29725 -19.40123 -18.70954 -17.96111 -17.81758 -17.10871 -16.74813 -16.44480 -16.06561 -15.68507 -15.02864 -14.75715 -14.39517 -14.38847 -14.23664 -13.85199 -13.69069 -13.46320 -13.25497 -12.98400 -12.83877 -12.68573 -12.61600 -12.46703 -12.25756 -12.11539 -11.95099 -11.72643 -11.57997 -11.53712 -11.45546 -11.28696 -10.52309 -9.38686 -8.44519 -8.43845 -5.69640 0.82405 1.01196 1.20444 1.39271 1.49455 1.50357 1.73836 2.29141 2.94793 3.43056 3.50923 3.72231 3.90800 3.99447 4.08916 4.09407 4.32195 4.34187 4.38352 4.55934 4.59489 4.67661 4.76795 4.88049 4.92518 4.92855 4.96426 4.98864 5.12825 5.16136 5.31110 5.40239 5.41083 5.52398 5.52696 5.80878 5.91178 6.03453 6.09637 6.54869 6.75592 6.85964 7.57572 7.69969 8.75267 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.002792 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.752322 B =10027.503627 C =10653.054010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.361 6.361 4 C 0.458 3.542 5 O -0.548 6.548 6 C -0.104 4.104 7 C -0.096 4.096 8 C -0.067 4.067 9 C -0.028 4.028 10 C -0.228 4.228 11 C -0.065 4.065 12 C -0.251 4.251 13 C 0.190 3.810 14 N -0.597 5.597 15 C -0.315 4.315 16 H 0.100 0.900 17 C -0.037 4.037 18 N -0.938 5.938 19 Si 0.997 3.003 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.266 1.266 23 C -0.246 4.246 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.389 0.611 39 H 0.272 0.728 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.209 -2.058 10.849 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.278 6.278 4 C 0.304 3.696 5 O -0.439 6.439 6 C -0.141 4.141 7 C -0.134 4.134 8 C -0.104 4.104 9 C -0.029 4.029 10 C -0.249 4.249 11 C -0.084 4.084 12 C -0.275 4.275 13 C 0.075 3.925 14 N -0.204 5.204 15 C -0.445 4.445 16 H 0.117 0.883 17 C -0.234 4.234 18 N -0.579 5.579 19 Si 0.820 3.180 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.271 4.271 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.222 0.778 39 H 0.081 0.919 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.691 -2.390 10.547 22.466 hybrid contribution 1.188 -0.503 -0.992 1.628 sum -18.504 -2.893 9.555 21.025 Atomic orbital electron populations 1.21812 0.90228 1.04299 1.03849 1.23258 0.97229 0.79589 1.02227 1.86516 1.24237 1.33336 1.83753 1.24497 0.80432 0.93773 0.70934 1.90687 1.61264 1.44887 1.47024 1.21532 0.94902 0.89235 1.08436 1.21278 0.92781 0.96954 1.02404 1.20549 0.89236 0.96292 1.04363 1.19680 0.96078 0.95273 0.91859 1.20728 0.93639 1.13087 0.97493 1.20990 0.94898 0.95994 0.96481 1.20594 0.99037 1.15883 0.91997 1.18354 0.91982 0.95234 0.86962 1.40934 1.05626 1.69511 1.04299 1.19920 0.82570 1.47428 0.94571 0.88264 1.26131 1.05159 0.97910 0.94227 1.69789 1.38169 1.51918 0.97986 0.84909 0.76535 0.79149 0.77375 1.19331 1.20587 1.19111 1.20369 0.91401 1.16870 0.98432 0.90955 0.91219 0.88461 0.91962 0.91560 0.84358 0.85307 0.93635 0.92077 0.88234 0.90111 0.84832 0.85158 0.88153 0.77830 0.91879 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.05 0.84 6.19 71.98 0.45 1.28 16 3 O -0.36 -7.14 10.22 -51.44 -0.53 -7.67 16 4 C 0.46 10.46 7.96 71.24 0.57 11.03 16 5 O -0.55 -17.10 15.73 21.98 0.35 -16.75 16 6 C -0.10 -1.70 5.81 29.85 0.17 -1.52 16 7 C -0.10 -2.27 4.49 30.59 0.14 -2.13 16 8 C -0.07 -1.55 5.34 29.85 0.16 -1.39 16 9 C -0.03 -0.94 5.13 -19.89 -0.10 -1.04 16 10 C -0.23 -7.49 9.70 22.31 0.22 -7.28 16 11 C -0.06 -2.37 10.04 22.25 0.22 -2.15 16 12 C -0.25 -11.22 9.30 22.43 0.21 -11.01 16 13 C 0.19 9.12 6.62 38.36 0.25 9.37 16 14 N -0.60 -32.09 5.43 -184.29 -1.00 -33.09 16 15 C -0.32 -17.48 9.56 84.04 0.80 -16.68 16 16 H 0.10 5.31 5.68 -2.91 -0.02 5.29 16 17 C -0.04 -2.01 5.50 84.86 0.47 -1.55 16 18 N -0.94 -53.91 13.05 21.65 0.28 -53.62 16 19 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 C -0.25 -10.17 9.55 22.43 0.21 -9.95 16 24 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 28 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 29 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.04 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 33 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 34 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 35 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 37 H 0.10 4.63 5.96 -2.91 -0.02 4.61 16 38 H 0.39 21.45 7.90 -92.71 -0.73 20.72 16 39 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 40 H 0.10 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -68.31 342.15 5.94 -62.37 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: 0.30 Total: 37.30 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 4.51 Total: -33.69 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -0.72 Total: -86.71 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.18 Total: -24.42 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.31 5.94 -62.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.100 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds