Wall clock time and date at job start Mon Mar 30 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35958 * 117.00087 * 2 1 4 4 C 1.39413 * 119.82102 * 0.02562 * 3 2 1 5 5 C 1.38099 * 120.56841 * 179.97438 * 4 3 2 6 6 C 1.38719 * 120.20226 * 0.02781 * 5 4 3 7 7 N 1.38857 * 120.17964 * 179.97438 * 6 5 4 8 8 C 1.46495 * 119.99936 * 359.97438 * 7 6 5 9 9 H 1.08996 * 112.91145 * 336.25014 * 8 7 6 10 10 C 1.53785 * 113.61606 * 107.50219 * 8 7 6 11 11 C 1.53788 * 87.08124 * 139.98016 * 10 8 7 12 12 H 1.08997 * 113.61702 * 89.11670 * 11 10 8 13 13 C 1.53005 * 113.68715 * 220.00805 * 11 10 8 14 14 O 1.42897 * 109.46910 * 274.06432 * 13 11 10 15 15 C 1.53786 * 113.61236 * 204.99856 * 8 7 6 16 16 C 1.41535 * 119.63545 * 0.22387 * 6 5 4 17 17 C 1.41030 * 120.27261 * 179.75108 * 16 6 5 18 18 H 1.08000 * 120.00712 * 329.56039 * 17 16 6 19 19 C 1.39905 * 119.99821 * 149.55934 * 17 16 6 20 20 N 1.30894 * 119.99944 * 162.12951 * 19 17 16 21 21 Si 1.86800 * 120.00196 * 342.13409 * 19 17 16 22 22 H 1.48497 * 109.47218 * 95.38883 * 21 19 17 23 23 H 1.48497 * 109.47297 * 215.38966 * 21 19 17 24 24 H 1.48498 * 109.47145 * 335.39307 * 21 19 17 25 25 C 1.37841 * 119.81977 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47486 * 59.99362 * 1 2 3 27 27 H 1.08998 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46602 * 299.99765 * 1 2 3 29 29 H 1.07998 * 119.71697 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.89930 * 179.97438 * 5 4 3 31 31 H 0.96993 * 119.99786 * 179.97438 * 7 6 5 32 32 H 1.09002 * 113.61425 * 25.43203 * 10 8 7 33 33 H 1.09000 * 113.61454 * 254.52848 * 10 8 7 34 34 H 1.09003 * 109.46850 * 34.06429 * 13 11 10 35 35 H 1.09002 * 109.47068 * 154.06136 * 13 11 10 36 36 H 0.96706 * 113.99795 * 180.02562 * 14 13 11 37 37 H 1.09001 * 113.61674 * 105.46948 * 15 8 7 38 38 H 1.09001 * 113.61675 * 334.56179 * 15 8 7 39 39 H 0.97005 * 120.00048 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.10989 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2833 2.3782 0.0005 5 6 1.8942 3.6168 0.0011 6 6 3.2781 3.7123 0.0005 7 7 3.8918 4.9579 0.0005 8 6 3.0775 6.1757 0.0006 9 1 2.0777 6.0176 -0.4038 10 6 3.0874 6.9233 1.3444 11 6 3.1530 8.2259 0.5296 12 1 2.1739 8.6283 0.2698 13 6 4.0884 9.2787 1.1278 14 8 3.3798 10.0467 2.1024 15 6 3.7967 7.3976 -0.5949 16 6 4.0610 2.5332 -0.0054 17 6 5.4689 2.6147 -0.0114 18 1 5.9595 3.4519 -0.4855 19 6 6.2303 1.6109 0.5970 20 7 7.5000 1.4849 0.3052 21 14 5.4347 0.4504 1.8257 22 1 5.0141 -0.7931 1.1315 23 1 6.4106 0.1152 2.8936 24 1 4.2469 1.1065 2.4288 25 6 3.4230 1.2792 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2053 2.3130 0.0014 30 1 1.2926 4.5138 0.0011 31 1 4.8596 5.0216 0.0005 32 1 3.9799 6.7364 1.9415 33 1 2.1647 6.8104 1.9137 34 1 4.9365 8.7841 1.6013 35 1 4.4472 9.9373 0.3368 36 1 3.9124 10.7352 2.5237 37 1 3.4467 7.6676 -1.5913 38 1 4.8832 7.3404 -0.5279 39 1 8.0278 0.7887 0.7267 40 1 4.0101 0.3727 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168248095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:32 Heat of formation + Delta-G solvation = -46.566791 kcal Electronic energy + Delta-G solvation = -21395.427136 eV Core-core repulsion = 18175.789507 eV Total energy + Delta-G solvation = -3219.637629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.47240 -38.72850 -36.96629 -36.13775 -33.50535 -32.67458 -30.42794 -28.53745 -27.34708 -25.82704 -25.43963 -24.82242 -22.65215 -20.84905 -19.97177 -19.33989 -17.68803 -17.36311 -16.65592 -16.05849 -15.76211 -15.20857 -14.90933 -14.62980 -14.50391 -14.36950 -13.70703 -13.30725 -12.76778 -12.63706 -12.31213 -12.27723 -12.01014 -11.90566 -11.61201 -11.41534 -11.07842 -10.84291 -10.78837 -10.69496 -10.50157 -10.37244 -10.10605 -9.92590 -9.80944 -9.52625 -9.03453 -8.47838 -7.63659 -6.88146 -6.18527 -4.30460 2.63242 2.86407 3.24716 3.30605 3.43307 4.04121 4.09280 4.23590 4.48367 4.57835 4.72868 4.80591 5.07175 5.13760 5.37452 5.42155 5.49684 5.53374 5.61286 5.67864 5.83686 5.85611 5.89036 5.94339 6.05927 6.17731 6.23585 6.33313 6.55502 6.64269 6.68361 7.10589 7.18734 7.27851 7.42810 7.50992 7.66638 7.89327 8.17302 8.34708 8.53438 8.76822 8.83444 8.96578 10.14157 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.005428 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.742661 B = 5156.767666 C = 6472.044310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.333 6.333 3 C 0.112 3.888 4 C -0.275 4.275 5 C -0.144 4.144 6 C 0.109 3.891 7 N -0.733 5.733 8 C 0.142 3.858 9 H 0.098 0.902 10 C -0.149 4.149 11 C -0.111 4.111 12 H 0.094 0.906 13 C 0.087 3.913 14 O -0.574 6.574 15 C -0.141 4.141 16 C 0.080 3.920 17 C -0.447 4.447 18 H 0.089 0.911 19 C 0.087 3.913 20 N -0.815 5.815 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.295 1.295 24 H -0.246 1.246 25 C -0.242 4.242 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.375 0.625 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.283 0.717 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 9.670 1.149 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.248 6.248 3 C 0.068 3.932 4 C -0.295 4.295 5 C -0.168 4.168 6 C 0.010 3.990 7 N -0.365 5.365 8 C 0.035 3.965 9 H 0.116 0.884 10 C -0.189 4.189 11 C -0.130 4.130 12 H 0.112 0.888 13 C 0.009 3.991 14 O -0.379 6.379 15 C -0.179 4.179 16 C 0.075 3.925 17 C -0.476 4.476 18 H 0.107 0.893 19 C -0.131 4.131 20 N -0.439 5.439 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.223 1.223 24 H -0.169 1.169 25 C -0.263 4.263 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.235 0.765 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.221 0.779 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.055 9.069 0.961 11.531 hybrid contribution 0.380 -0.005 0.677 0.776 sum -6.675 9.064 1.638 11.376 Atomic orbital electron populations 1.22757 0.80643 1.01909 1.00583 1.85988 1.19616 1.29003 1.90149 1.18612 0.91877 0.82722 1.00013 1.20192 0.97217 0.91901 1.20210 1.19884 0.92276 0.95916 1.08696 1.17789 0.90979 0.85301 1.04969 1.43973 1.07416 1.01074 1.84068 1.22047 0.95822 0.83729 0.94952 0.88396 1.23656 1.02558 0.94492 0.98186 1.22354 0.99626 0.93638 0.97420 0.88763 1.22206 0.94023 0.92631 0.90213 1.86502 1.42368 1.51341 1.57708 1.23381 1.00876 0.95937 0.97741 1.17119 0.93226 0.88830 0.93287 1.19063 0.89184 1.07500 1.31894 0.89292 1.26056 0.94573 0.96221 0.96233 1.69719 1.08250 1.29916 1.36057 0.86302 0.79491 0.80583 0.79917 1.19543 1.22271 1.16873 1.20026 0.90493 0.97235 1.18546 0.93598 0.89901 0.93667 0.88384 0.88459 0.76479 0.89893 0.91662 0.93417 0.93864 0.77861 0.91082 0.89687 0.90634 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.81 101.05 0.99 1.57 16 2 O -0.33 -7.17 10.49 -19.61 -0.21 -7.38 16 3 C 0.11 2.65 6.67 -39.29 -0.26 2.38 16 4 C -0.27 -5.91 9.03 -39.19 -0.35 -6.27 16 5 C -0.14 -3.06 9.24 -39.45 -0.36 -3.43 16 6 C 0.11 2.47 6.68 -83.25 -0.56 1.91 16 7 N -0.73 -14.12 5.43 -50.93 -0.28 -14.40 16 8 C 0.14 2.19 4.04 -67.12 -0.27 1.92 16 9 H 0.10 1.50 6.13 -51.93 -0.32 1.18 16 10 C -0.15 -2.13 7.43 -25.91 -0.19 -2.33 16 11 C -0.11 -1.34 4.01 -89.80 -0.36 -1.70 16 12 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 13 C 0.09 0.93 6.87 37.16 0.26 1.19 16 14 O -0.57 -6.35 13.66 -35.23 -0.48 -6.83 16 15 C -0.14 -1.76 7.39 -25.91 -0.19 -1.95 16 16 C 0.08 2.04 5.11 -106.65 -0.55 1.49 16 17 C -0.45 -11.78 8.91 -37.90 -0.34 -12.12 16 18 H 0.09 2.38 7.03 -52.49 -0.37 2.01 16 19 C 0.09 2.30 5.41 -17.33 -0.09 2.20 16 20 N -0.81 -21.72 13.93 55.55 0.77 -20.95 16 21 Si 0.91 21.78 24.52 -169.99 -4.17 17.62 16 22 H -0.27 -6.46 6.71 56.52 0.38 -6.08 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.25 -6.11 6.85 56.52 0.39 -5.72 16 25 C -0.24 -6.18 7.07 -38.80 -0.27 -6.46 16 26 H 0.05 0.67 7.65 -51.93 -0.40 0.27 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.66 7.65 -51.93 -0.40 0.27 16 29 H 0.10 1.84 6.26 -52.49 -0.33 1.51 16 30 H 0.10 1.81 6.03 -52.48 -0.32 1.50 16 31 H 0.40 7.83 7.03 -40.82 -0.29 7.54 16 32 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.50 7.88 -51.93 -0.41 0.09 16 35 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.35 9.12 45.56 0.42 2.76 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.05 8.08 -51.93 -0.42 0.64 16 39 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 40 H 0.11 2.83 4.76 -52.49 -0.25 2.58 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -30.02 320.91 -6.85 -36.87 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.77 Total: 11.82 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.56 Total: -21.59 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.50 Total: -35.35 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.69 Total: -14.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.17 Total: 17.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.02 -6.85 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168248095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.699 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds