Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35958 * 117.00087 * 2 1 4 4 C 1.39413 * 119.82102 * 0.02562 * 3 2 1 5 5 C 1.38099 * 120.56841 * 179.97438 * 4 3 2 6 6 C 1.38719 * 120.20226 * 0.02781 * 5 4 3 7 7 N 1.38857 * 120.17964 * 179.97438 * 6 5 4 8 8 C 1.46495 * 119.99936 * 359.97438 * 7 6 5 9 9 H 1.08996 * 112.91145 * 336.25014 * 8 7 6 10 10 C 1.53785 * 113.61606 * 107.50219 * 8 7 6 11 11 C 1.53788 * 87.08124 * 139.98016 * 10 8 7 12 12 H 1.08997 * 113.61702 * 89.11670 * 11 10 8 13 13 C 1.53005 * 113.68715 * 220.00805 * 11 10 8 14 14 O 1.42897 * 109.46910 * 274.06432 * 13 11 10 15 15 C 1.53786 * 113.61236 * 204.99856 * 8 7 6 16 16 C 1.41535 * 119.63545 * 0.22387 * 6 5 4 17 17 C 1.41030 * 120.27261 * 179.75108 * 16 6 5 18 18 H 1.08000 * 120.00712 * 329.56039 * 17 16 6 19 19 C 1.39905 * 119.99821 * 149.55934 * 17 16 6 20 20 N 1.30894 * 119.99944 * 162.12951 * 19 17 16 21 21 Si 1.86800 * 120.00196 * 342.13409 * 19 17 16 22 22 H 1.48497 * 109.47218 * 95.38883 * 21 19 17 23 23 H 1.48497 * 109.47297 * 215.38966 * 21 19 17 24 24 H 1.48498 * 109.47145 * 335.39307 * 21 19 17 25 25 C 1.37841 * 119.81977 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47486 * 59.99362 * 1 2 3 27 27 H 1.08998 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46602 * 299.99765 * 1 2 3 29 29 H 1.07998 * 119.71697 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.89930 * 179.97438 * 5 4 3 31 31 H 0.96993 * 119.99786 * 179.97438 * 7 6 5 32 32 H 1.09002 * 113.61425 * 25.43203 * 10 8 7 33 33 H 1.09000 * 113.61454 * 254.52848 * 10 8 7 34 34 H 1.09003 * 109.46850 * 34.06429 * 13 11 10 35 35 H 1.09002 * 109.47068 * 154.06136 * 13 11 10 36 36 H 0.96706 * 113.99795 * 180.02562 * 14 13 11 37 37 H 1.09001 * 113.61674 * 105.46948 * 15 8 7 38 38 H 1.09001 * 113.61675 * 334.56179 * 15 8 7 39 39 H 0.97005 * 120.00048 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.10989 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2833 2.3782 0.0005 5 6 1.8942 3.6168 0.0011 6 6 3.2781 3.7123 0.0005 7 7 3.8918 4.9579 0.0005 8 6 3.0775 6.1757 0.0006 9 1 2.0777 6.0176 -0.4038 10 6 3.0874 6.9233 1.3444 11 6 3.1530 8.2259 0.5296 12 1 2.1739 8.6283 0.2698 13 6 4.0884 9.2787 1.1278 14 8 3.3798 10.0467 2.1024 15 6 3.7967 7.3976 -0.5949 16 6 4.0610 2.5332 -0.0054 17 6 5.4689 2.6147 -0.0114 18 1 5.9595 3.4519 -0.4855 19 6 6.2303 1.6109 0.5970 20 7 7.5000 1.4849 0.3052 21 14 5.4347 0.4504 1.8257 22 1 5.0141 -0.7931 1.1315 23 1 6.4106 0.1152 2.8936 24 1 4.2469 1.1065 2.4288 25 6 3.4230 1.2792 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2053 2.3130 0.0014 30 1 1.2926 4.5138 0.0011 31 1 4.8596 5.0216 0.0005 32 1 3.9799 6.7364 1.9415 33 1 2.1647 6.8104 1.9137 34 1 4.9365 8.7841 1.6013 35 1 4.4472 9.9373 0.3368 36 1 3.9124 10.7352 2.5237 37 1 3.4467 7.6676 -1.5913 38 1 4.8832 7.3404 -0.5279 39 1 8.0278 0.7887 0.7267 40 1 4.0101 0.3727 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168248095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = -68.360264 kcal Electronic energy + Delta-G solvation = -21396.372172 eV Core-core repulsion = 18175.789507 eV Total energy + Delta-G solvation = -3220.582665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85236 -40.16106 -38.45401 -37.15523 -35.37964 -34.21229 -32.27352 -29.97464 -28.52268 -27.23450 -26.70027 -26.47895 -24.12391 -22.34978 -21.56801 -20.48951 -19.49867 -18.42934 -18.15929 -17.57820 -17.19200 -16.53688 -16.33126 -16.30517 -15.91660 -15.47681 -15.14100 -14.93309 -14.25103 -14.13275 -13.87355 -13.75982 -13.36825 -13.31792 -13.19710 -12.70798 -12.65441 -12.48579 -12.23968 -12.09073 -11.90688 -11.77098 -11.49366 -11.33263 -11.28013 -10.90431 -10.73845 -10.03602 -9.50595 -8.84949 -7.89642 -6.24143 0.78123 1.04671 1.29771 1.40524 1.48628 2.15843 2.63150 2.77208 2.95734 3.33596 3.54316 3.68456 3.80040 4.02598 4.09547 4.26137 4.43992 4.47269 4.49852 4.52281 4.52666 4.69179 4.75360 4.79528 4.85380 4.88272 4.88794 4.91926 5.13030 5.21799 5.30977 5.35009 5.45127 5.61474 5.65360 5.86663 6.09983 6.22056 6.53694 6.82515 6.89758 6.93183 7.14178 7.25582 8.22854 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.005428 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.742661 B = 5156.767666 C = 6472.044310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.094 3.906 4 C -0.255 4.255 5 C -0.148 4.148 6 C 0.109 3.891 7 N -0.733 5.733 8 C 0.129 3.871 9 H 0.104 0.896 10 C -0.150 4.150 11 C -0.099 4.099 12 H 0.102 0.898 13 C 0.087 3.913 14 O -0.593 6.593 15 C -0.130 4.130 16 C 0.053 3.947 17 C -0.467 4.467 18 H 0.072 0.928 19 C 0.057 3.943 20 N -0.851 5.851 21 Si 0.956 3.044 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.262 1.262 25 C -0.259 4.259 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.394 0.606 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.395 0.605 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.289 0.711 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.331 11.121 1.242 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.048 3.952 4 C -0.275 4.275 5 C -0.172 4.172 6 C 0.008 3.992 7 N -0.364 5.364 8 C 0.023 3.977 9 H 0.122 0.878 10 C -0.190 4.190 11 C -0.118 4.118 12 H 0.120 0.880 13 C 0.009 3.991 14 O -0.401 6.401 15 C -0.168 4.168 16 C 0.048 3.952 17 C -0.497 4.497 18 H 0.090 0.910 19 C -0.157 4.157 20 N -0.479 5.479 21 Si 0.782 3.218 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.186 1.186 25 C -0.280 4.280 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.075 0.925 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.229 0.771 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.245 0.755 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.583 10.559 1.065 14.299 hybrid contribution 0.900 -0.379 0.617 1.155 sum -8.683 10.180 1.682 13.486 Atomic orbital electron populations 1.23156 0.77478 1.04558 1.01680 1.85953 1.22880 1.28147 1.90046 1.18699 0.91532 0.84290 1.00648 1.20650 0.98961 0.91129 1.16732 1.20274 0.91898 0.97245 1.07787 1.18001 0.91716 0.85809 1.03682 1.44169 1.07589 1.01330 1.83315 1.22405 0.96018 0.82911 0.96412 0.87778 1.23597 1.01832 0.95933 0.97590 1.22279 1.00287 0.93042 0.96218 0.88018 1.22171 0.93375 0.92711 0.90800 1.86439 1.43472 1.52201 1.58000 1.23294 1.00685 0.94091 0.98732 1.17271 0.93092 0.90058 0.94817 1.19048 0.90003 1.07508 1.33166 0.91046 1.26492 0.94875 0.97198 0.97170 1.69736 1.08977 1.31378 1.37769 0.85606 0.78369 0.78978 0.78799 1.20173 1.20692 1.18638 1.20113 0.91881 0.96735 1.19304 0.92270 0.86781 0.92537 0.84893 0.85258 0.77097 0.91157 0.91941 0.93649 0.91884 0.75530 0.89492 0.89741 0.90026 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.81 113.37 1.11 1.83 16 2 O -0.36 -14.74 10.49 -93.08 -0.98 -15.72 16 3 C 0.09 4.30 6.67 22.46 0.15 4.45 16 4 C -0.25 -10.23 9.03 22.52 0.20 -10.02 16 5 C -0.15 -5.94 9.24 22.35 0.21 -5.73 16 6 C 0.11 4.88 6.68 38.96 0.26 5.14 16 7 N -0.73 -27.96 5.43 -315.05 -1.71 -29.67 16 8 C 0.13 3.71 4.04 45.52 0.18 3.90 16 9 H 0.10 2.87 6.13 -2.39 -0.01 2.86 16 10 C -0.15 -4.05 7.43 31.12 0.23 -3.81 16 11 C -0.10 -2.14 4.01 -10.26 -0.04 -2.18 16 12 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 13 C 0.09 1.64 6.87 71.98 0.49 2.14 16 14 O -0.59 -11.62 13.66 -148.98 -2.03 -13.65 16 15 C -0.13 -2.95 7.39 31.12 0.23 -2.72 16 16 C 0.05 2.72 5.11 -21.18 -0.11 2.61 16 17 C -0.47 -25.64 8.91 23.36 0.21 -25.44 16 18 H 0.07 4.03 7.03 -2.91 -0.02 4.01 16 19 C 0.06 3.10 5.41 85.24 0.46 3.56 16 20 N -0.85 -47.17 13.93 21.82 0.30 -46.86 16 21 Si 0.96 46.46 24.52 68.60 1.68 48.14 16 22 H -0.28 -13.43 6.71 99.48 0.67 -12.77 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.26 -13.26 6.85 99.48 0.68 -12.58 16 25 C -0.26 -13.45 7.07 22.78 0.16 -13.28 16 26 H 0.06 1.49 7.65 -2.39 -0.02 1.47 16 27 H 0.11 2.44 8.14 -2.39 -0.02 2.43 16 28 H 0.06 1.45 7.65 -2.38 -0.02 1.43 16 29 H 0.13 4.36 6.26 -2.91 -0.02 4.35 16 30 H 0.13 4.31 6.03 -2.91 -0.02 4.30 16 31 H 0.39 15.77 7.03 -92.71 -0.65 15.12 16 32 H 0.07 2.08 7.92 -2.39 -0.02 2.06 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 0.88 7.88 -2.39 -0.02 0.86 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.40 3.98 9.12 -74.05 -0.68 3.30 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 39 H 0.29 14.67 8.30 -92.70 -0.77 13.90 16 40 H 0.09 4.88 4.76 -2.91 -0.01 4.86 16 Total: -1.00 -66.05 320.91 0.70 -65.35 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.32 Total: 31.97 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 3.75 Total: -39.55 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.41 Total: -76.54 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -3.01 Total: -29.37 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.68 Total: 48.14 kcal Total: -66.05 0.70 -65.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168248095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.009 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds