Wall clock time and date at job start Mon Mar 30 2020 01:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38730 * 120.05544 * 359.73068 * 3 2 1 5 5 C 1.38147 * 119.94222 * 179.74118 * 4 3 2 6 6 C 1.38271 * 120.05563 * 0.50991 * 5 4 3 7 7 C 1.50697 * 119.94588 * 179.74356 * 6 5 4 8 8 H 1.09000 * 109.48177 * 160.04444 * 7 6 5 9 9 C 1.53093 * 109.48172 * 280.07564 * 7 6 5 10 10 C 1.53176 * 109.16406 * 177.58812 * 9 7 6 11 11 H 1.09009 * 109.61445 * 62.93184 * 10 9 7 12 12 N 1.46500 * 109.54424 * 183.15139 * 10 9 7 13 13 C 1.36931 * 120.00299 * 204.55797 * 12 10 9 14 14 H 1.08005 * 119.99962 * 359.97438 * 13 12 10 15 15 C 1.38810 * 120.00574 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00444 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99501 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47296 * 90.00133 * 17 15 13 19 19 H 1.48498 * 109.47328 * 210.00060 * 17 15 13 20 20 H 1.48501 * 109.47179 * 330.00244 * 17 15 13 21 21 C 1.53173 * 109.03910 * 303.02495 * 10 9 7 22 22 C 1.53093 * 109.16640 * 56.97598 * 21 10 9 23 23 O 1.42895 * 109.41482 * 302.39390 * 22 21 10 24 24 C 1.38267 * 120.11057 * 359.76343 * 6 5 4 25 25 C 1.38151 * 120.05677 * 359.97438 * 24 6 5 26 26 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 28 28 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03088 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.97444 * 180.22577 * 5 4 3 31 31 H 1.09000 * 109.52292 * 297.50132 * 9 7 6 32 32 H 1.09000 * 109.52105 * 57.68642 * 9 7 6 33 33 H 0.96999 * 119.99947 * 24.56072 * 12 10 9 34 34 H 0.97005 * 120.00174 * 179.97438 * 16 15 13 35 35 H 1.09005 * 109.52004 * 297.06983 * 21 10 9 36 36 H 1.09001 * 109.52638 * 176.88663 * 21 10 9 37 37 H 1.09000 * 109.48128 * 182.40568 * 22 21 10 38 38 H 1.09002 * 109.48762 * 62.38156 * 22 21 10 39 39 H 1.08003 * 119.97499 * 179.97438 * 24 6 5 40 40 H 1.07997 * 120.02828 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3751 -0.0056 5 6 1.9209 3.6048 -0.0002 6 6 3.3018 3.6759 0.0002 7 6 3.9859 5.0187 0.0002 8 1 5.0115 4.9041 0.3513 9 6 3.9931 5.5881 -1.4208 10 6 4.6358 6.9784 -1.4022 11 1 5.6750 6.8969 -1.0835 12 7 4.5792 7.5625 -2.7445 13 6 5.4852 8.5209 -3.1130 14 1 6.2412 8.8465 -2.4138 15 6 5.4313 9.0747 -4.3846 16 7 6.3024 9.9955 -4.7389 17 14 4.1231 8.5121 -5.5936 18 1 2.9129 9.3595 -5.4434 19 1 4.6440 8.6341 -6.9789 20 1 3.7724 7.0953 -5.3197 21 6 3.8679 7.8707 -0.4222 22 6 3.8655 7.2131 0.9603 23 8 3.2827 5.9118 0.8663 24 6 4.0560 2.5171 0.0001 25 6 3.4313 1.2849 0.0001 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2129 2.3201 -0.0105 30 1 1.3340 4.5114 -0.0009 31 1 4.5666 4.9303 -2.0739 32 1 2.9696 5.6649 -1.7876 33 1 3.8999 7.2704 -3.3723 34 1 6.2650 10.3823 -5.6277 35 1 2.8417 7.9936 -0.7689 36 1 4.3518 8.8455 -0.3611 37 1 3.2840 7.8228 1.6518 38 1 4.8895 7.1274 1.3240 39 1 5.1345 2.5752 0.0000 40 1 4.0209 0.3800 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168582789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:17 Heat of formation + Delta-G solvation = -47.744217 kcal Electronic energy + Delta-G solvation = -21280.021201 eV Core-core repulsion = 18060.332514 eV Total energy + Delta-G solvation = -3219.688686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37381 -39.24426 -37.35987 -35.19850 -32.33232 -32.05319 -31.15419 -29.89287 -28.97955 -27.35674 -24.65624 -23.37318 -22.86960 -22.19977 -20.79848 -19.81048 -18.31151 -17.62456 -16.53235 -16.31421 -15.93543 -15.56383 -14.92451 -14.68587 -14.52862 -13.94468 -13.90029 -13.72862 -13.49994 -13.35999 -12.89445 -12.71216 -12.48939 -12.17043 -11.71816 -11.38609 -11.23418 -11.11232 -11.00909 -10.90118 -10.81041 -10.48046 -10.18339 -9.88268 -9.62229 -9.33243 -9.06717 -8.92144 -8.17540 -7.29798 -5.79298 -3.15042 1.25546 1.33291 3.07966 3.36431 3.39918 3.44204 3.60756 3.98988 4.57425 4.66871 4.76626 4.84682 4.88482 4.90809 5.11437 5.18578 5.26008 5.27261 5.34483 5.39951 5.43598 5.52130 5.60232 5.68616 5.77422 5.85059 5.97821 6.09079 6.16921 6.17606 6.28695 6.32156 6.49489 6.57129 6.63963 6.74239 6.93891 7.22810 7.45657 7.96277 8.39851 9.18041 9.90842 10.10936 11.38986 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.003982 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.969702 B = 7030.040122 C = 7683.339706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.211 4.211 5 C -0.052 4.052 6 C -0.109 4.109 7 C 0.140 3.860 8 H 0.066 0.934 9 C -0.151 4.151 10 C 0.183 3.817 11 H 0.056 0.944 12 N -0.747 5.747 13 C -0.244 4.244 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.934 5.934 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.172 4.172 22 C 0.064 3.936 23 O -0.381 6.381 24 C -0.070 4.070 25 C -0.153 4.153 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.131 0.869 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 -17.539 12.352 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.229 4.229 5 C -0.070 4.070 6 C -0.110 4.110 7 C 0.082 3.918 8 H 0.083 0.917 9 C -0.189 4.189 10 C 0.073 3.927 11 H 0.074 0.926 12 N -0.389 5.389 13 C -0.374 4.374 14 H 0.108 0.892 15 C -0.191 4.191 16 N -0.581 5.581 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.213 4.213 22 C -0.013 4.013 23 O -0.301 6.301 24 C -0.088 4.088 25 C -0.172 4.172 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.149 0.851 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.173 -17.611 12.410 23.825 hybrid contribution -0.980 0.056 -1.181 1.536 sum -11.153 -17.555 11.230 23.636 Atomic orbital electron populations 1.23037 0.78531 1.03742 1.01436 1.86050 1.21298 1.27154 1.88892 1.19052 0.92414 0.84038 0.96846 1.21234 0.99942 0.92325 1.09444 1.20822 0.94122 0.97078 0.94972 1.19589 0.93904 0.93757 1.03711 1.20744 0.94321 0.86378 0.90353 0.91654 1.22531 1.02265 0.98236 0.95877 1.20192 0.96943 0.89394 0.86171 0.92643 1.42773 1.37734 1.47641 1.10725 1.19070 1.08063 1.12047 0.98231 0.89194 1.24665 0.98518 0.98608 0.97283 1.69698 1.37659 1.30485 1.20302 0.86559 0.82163 0.78394 0.81493 1.21077 1.21702 1.20311 1.22906 1.02144 1.01162 0.95083 1.22611 0.97853 0.83201 0.97622 1.87856 1.53674 1.22724 1.65821 1.20800 0.99944 0.90736 0.97362 1.20334 0.91295 0.98430 1.07104 0.92635 0.92667 0.88394 0.85593 0.85192 0.90767 0.91383 0.80601 0.93032 0.91815 0.90616 0.89415 0.93449 0.85099 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.49 10.50 -19.44 -0.20 -3.69 16 3 C 0.12 1.44 6.69 -39.22 -0.26 1.18 16 4 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 5 C -0.05 -0.66 9.35 -39.60 -0.37 -1.03 16 6 C -0.11 -1.44 4.98 -104.60 -0.52 -1.96 16 7 C 0.14 1.98 2.85 -27.84 -0.08 1.90 16 8 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 9 C -0.15 -2.44 4.87 -26.59 -0.13 -2.57 16 10 C 0.18 3.48 2.86 -67.75 -0.19 3.28 16 11 H 0.06 1.09 8.08 -51.92 -0.42 0.67 16 12 N -0.75 -17.64 4.93 -53.25 -0.26 -17.90 16 13 C -0.24 -6.84 10.41 -15.06 -0.16 -7.00 16 14 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 15 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 16 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 17 Si 0.88 22.20 27.74 -169.99 -4.71 17.48 16 18 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 21 C -0.17 -2.96 5.72 -26.59 -0.15 -3.12 16 22 C 0.06 0.91 6.84 37.21 0.25 1.16 16 23 O -0.38 -5.67 9.73 -35.23 -0.34 -6.01 16 24 C -0.07 -0.83 9.66 -39.60 -0.38 -1.21 16 25 C -0.15 -1.76 9.99 -39.43 -0.39 -2.16 16 26 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 27 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 30 H 0.13 1.64 7.78 -52.49 -0.41 1.23 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.36 8.47 5.66 -40.82 -0.23 8.24 16 34 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.13 1.28 8.03 -52.48 -0.42 0.86 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -32.21 326.76 -7.67 -39.88 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.00 Total: 6.88 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.85 Total: -13.06 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.51 Total: -46.40 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.55 Total: -9.71 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.21 -7.67 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168582789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.866 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds