Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38730 * 120.05544 * 359.73068 * 3 2 1 5 5 C 1.38147 * 119.94222 * 179.74118 * 4 3 2 6 6 C 1.38271 * 120.05563 * 0.50991 * 5 4 3 7 7 C 1.50697 * 119.94588 * 179.74356 * 6 5 4 8 8 H 1.09000 * 109.48177 * 160.04444 * 7 6 5 9 9 C 1.53093 * 109.48172 * 280.07564 * 7 6 5 10 10 C 1.53176 * 109.16406 * 177.58812 * 9 7 6 11 11 H 1.09009 * 109.61445 * 62.93184 * 10 9 7 12 12 N 1.46500 * 109.54424 * 183.15139 * 10 9 7 13 13 C 1.36931 * 120.00299 * 204.55797 * 12 10 9 14 14 H 1.08005 * 119.99962 * 359.97438 * 13 12 10 15 15 C 1.38810 * 120.00574 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00444 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99501 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47296 * 90.00133 * 17 15 13 19 19 H 1.48498 * 109.47328 * 210.00060 * 17 15 13 20 20 H 1.48501 * 109.47179 * 330.00244 * 17 15 13 21 21 C 1.53173 * 109.03910 * 303.02495 * 10 9 7 22 22 C 1.53093 * 109.16640 * 56.97598 * 21 10 9 23 23 O 1.42895 * 109.41482 * 302.39390 * 22 21 10 24 24 C 1.38267 * 120.11057 * 359.76343 * 6 5 4 25 25 C 1.38151 * 120.05677 * 359.97438 * 24 6 5 26 26 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 28 28 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03088 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.97444 * 180.22577 * 5 4 3 31 31 H 1.09000 * 109.52292 * 297.50132 * 9 7 6 32 32 H 1.09000 * 109.52105 * 57.68642 * 9 7 6 33 33 H 0.96999 * 119.99947 * 24.56072 * 12 10 9 34 34 H 0.97005 * 120.00174 * 179.97438 * 16 15 13 35 35 H 1.09005 * 109.52004 * 297.06983 * 21 10 9 36 36 H 1.09001 * 109.52638 * 176.88663 * 21 10 9 37 37 H 1.09000 * 109.48128 * 182.40568 * 22 21 10 38 38 H 1.09002 * 109.48762 * 62.38156 * 22 21 10 39 39 H 1.08003 * 119.97499 * 179.97438 * 24 6 5 40 40 H 1.07997 * 120.02828 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3751 -0.0056 5 6 1.9209 3.6048 -0.0002 6 6 3.3018 3.6759 0.0002 7 6 3.9859 5.0187 0.0002 8 1 5.0115 4.9041 0.3513 9 6 3.9931 5.5881 -1.4208 10 6 4.6358 6.9784 -1.4022 11 1 5.6750 6.8969 -1.0835 12 7 4.5792 7.5625 -2.7445 13 6 5.4852 8.5209 -3.1130 14 1 6.2412 8.8465 -2.4138 15 6 5.4313 9.0747 -4.3846 16 7 6.3024 9.9955 -4.7389 17 14 4.1231 8.5121 -5.5936 18 1 2.9129 9.3595 -5.4434 19 1 4.6440 8.6341 -6.9789 20 1 3.7724 7.0953 -5.3197 21 6 3.8679 7.8707 -0.4222 22 6 3.8655 7.2131 0.9603 23 8 3.2827 5.9118 0.8663 24 6 4.0560 2.5171 0.0001 25 6 3.4313 1.2849 0.0001 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2129 2.3201 -0.0105 30 1 1.3340 4.5114 -0.0009 31 1 4.5666 4.9303 -2.0739 32 1 2.9696 5.6649 -1.7876 33 1 3.8999 7.2704 -3.3723 34 1 6.2650 10.3823 -5.6277 35 1 2.8417 7.9936 -0.7689 36 1 4.3518 8.8455 -0.3611 37 1 3.2840 7.8228 1.6518 38 1 4.8895 7.1274 1.3240 39 1 5.1345 2.5752 0.0000 40 1 4.0209 0.3800 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168582789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -68.314368 kcal Electronic energy + Delta-G solvation = -21280.913189 eV Core-core repulsion = 18060.332514 eV Total energy + Delta-G solvation = -3220.580675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28580 -40.35059 -38.28477 -36.87807 -34.15520 -33.25060 -32.03387 -31.69238 -29.99374 -28.08719 -26.25167 -24.59553 -24.15355 -23.41695 -21.88441 -21.28088 -19.65771 -19.10551 -17.51450 -17.46792 -16.71146 -16.61165 -16.53467 -15.94285 -15.66751 -15.49521 -15.22467 -14.96370 -14.55657 -14.53654 -14.35155 -13.99804 -13.55300 -13.22306 -12.99994 -12.85352 -12.76719 -12.52256 -12.31163 -12.08525 -11.92708 -11.84029 -11.80759 -11.68405 -11.26624 -10.94668 -10.53174 -9.94322 -9.34560 -9.07623 -8.04103 -5.37614 0.37275 0.42583 1.36260 1.38654 1.46119 2.38552 2.46552 2.65219 2.93579 3.27100 3.48853 3.79816 3.86993 3.96391 4.00998 4.11689 4.20980 4.32003 4.34261 4.39959 4.41854 4.48040 4.54765 4.62089 4.69109 4.75079 4.77015 4.82138 4.95890 5.09883 5.13916 5.27241 5.28730 5.40797 5.46296 5.65625 5.74863 5.79179 6.20012 6.30613 6.44741 7.05418 7.81517 8.00778 9.17383 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.003982 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.969702 B = 7030.040122 C = 7683.339706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.116 3.884 4 C -0.213 4.213 5 C -0.063 4.063 6 C -0.127 4.127 7 C 0.146 3.854 8 H 0.076 0.924 9 C -0.139 4.139 10 C 0.174 3.826 11 H 0.047 0.953 12 N -0.751 5.751 13 C -0.228 4.228 14 H 0.059 0.941 15 C -0.063 4.063 16 N -0.984 5.984 17 Si 0.952 3.048 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.254 1.254 21 C -0.165 4.165 22 C 0.071 3.929 23 O -0.385 6.385 24 C -0.071 4.071 25 C -0.161 4.161 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.364 0.636 34 H 0.258 0.742 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.148 0.852 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.040 -19.726 13.103 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.070 3.930 4 C -0.231 4.231 5 C -0.081 4.081 6 C -0.127 4.127 7 C 0.088 3.912 8 H 0.094 0.906 9 C -0.178 4.178 10 C 0.066 3.934 11 H 0.065 0.935 12 N -0.394 5.394 13 C -0.359 4.359 14 H 0.077 0.923 15 C -0.255 4.255 16 N -0.634 5.634 17 Si 0.780 3.220 18 H -0.206 1.206 19 H -0.222 1.222 20 H -0.179 1.179 21 C -0.206 4.206 22 C -0.006 4.006 23 O -0.304 6.304 24 C -0.089 4.089 25 C -0.180 4.180 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.164 0.836 30 H 0.145 0.855 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.197 0.803 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.166 0.834 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.945 -19.843 13.213 26.665 hybrid contribution -0.437 0.671 -1.312 1.537 sum -12.382 -19.172 11.901 25.739 Atomic orbital electron populations 1.23331 0.76610 1.05537 1.02148 1.86040 1.23345 1.26723 1.88662 1.19256 0.92805 0.84551 0.96343 1.21421 1.01051 0.91754 1.08892 1.20902 0.94146 0.97559 0.95492 1.19577 0.94246 0.93484 1.05394 1.20710 0.95124 0.86683 0.88688 0.90605 1.22404 1.01545 0.96157 0.97680 1.20445 0.97244 0.91334 0.84369 0.93499 1.42808 1.36903 1.46986 1.12687 1.19029 1.07460 1.12000 0.97443 0.92310 1.25463 1.01231 0.99273 0.99486 1.69873 1.40191 1.32546 1.20805 0.85447 0.79128 0.79094 0.78347 1.20563 1.22182 1.17902 1.22754 1.01021 1.00072 0.96705 1.22620 0.99166 0.83053 0.95785 1.87872 1.54037 1.22793 1.65734 1.21003 1.00853 0.90376 0.96682 1.20595 0.91640 0.98949 1.06784 0.92037 0.91778 0.86209 0.83638 0.85462 0.90781 0.91663 0.80307 0.93337 0.92336 0.92489 0.87109 0.92290 0.83412 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.53 10.50 -92.47 -0.97 -7.50 16 3 C 0.12 2.50 6.69 22.51 0.15 2.65 16 4 C -0.21 -4.44 9.04 22.37 0.20 -4.24 16 5 C -0.06 -1.50 9.35 22.26 0.21 -1.29 16 6 C -0.13 -3.11 4.98 -19.85 -0.10 -3.20 16 7 C 0.15 3.85 2.85 29.88 0.09 3.94 16 8 H 0.08 1.85 8.00 -2.39 -0.02 1.83 16 9 C -0.14 -4.32 4.87 30.68 0.15 -4.17 16 10 C 0.17 6.53 2.86 45.11 0.13 6.66 16 11 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 12 N -0.75 -35.23 4.93 -322.38 -1.59 -36.82 16 13 C -0.23 -13.01 10.41 84.03 0.88 -12.13 16 14 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 15 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 16 N -0.98 -63.29 13.97 21.65 0.30 -62.98 16 17 Si 0.95 45.95 27.74 68.60 1.90 47.85 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.25 -11.17 6.52 99.48 0.65 -10.52 16 21 C -0.17 -5.57 5.72 30.68 0.18 -5.39 16 22 C 0.07 1.86 6.84 72.01 0.49 2.35 16 23 O -0.38 -10.63 9.73 -148.98 -1.45 -12.08 16 24 C -0.07 -1.53 9.66 22.26 0.22 -1.31 16 25 C -0.16 -3.38 9.99 22.37 0.22 -3.16 16 26 H 0.06 0.64 7.65 -2.39 -0.02 0.62 16 27 H 0.06 0.62 7.67 -2.39 -0.02 0.61 16 28 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.15 2.32 6.30 -2.91 -0.02 2.30 16 30 H 0.13 3.02 7.78 -2.91 -0.02 3.00 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.36 16.57 5.66 -92.71 -0.52 16.05 16 34 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 35 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.15 2.55 8.03 -2.91 -0.02 2.52 16 40 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -69.56 326.76 3.03 -66.53 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.44 Total: 26.25 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 4.39 Total: -21.24 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -1.29 Total: -99.80 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -2.42 Total: -19.58 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Total: -69.56 3.03 -66.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168582789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.784 kcal (2) G-P(sol) polarization free energy of solvation -69.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds