Wall clock time and date at job start Mon Mar 30 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00022 * 2 1 4 4 C 1.38737 * 120.05312 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94079 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.05690 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94114 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.48235 * 25.00782 * 7 6 5 9 9 C 1.53087 * 109.48196 * 264.97645 * 7 6 5 10 10 C 1.53171 * 109.16516 * 182.42009 * 9 7 6 11 11 H 1.09002 * 109.61841 * 176.87754 * 10 9 7 12 12 N 1.46496 * 109.53518 * 297.09934 * 10 9 7 13 13 C 1.36942 * 120.00172 * 204.55729 * 12 10 9 14 14 H 1.08002 * 119.99585 * 0.02562 * 13 12 10 15 15 C 1.38805 * 120.00219 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99825 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00273 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46676 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47172 * 119.99687 * 17 15 13 20 20 H 1.48494 * 109.47053 * 240.00058 * 17 15 13 21 21 C 1.53179 * 109.04467 * 56.96736 * 10 9 7 22 22 C 1.53095 * 109.16157 * 303.02601 * 21 10 9 23 23 O 1.42898 * 109.41486 * 57.60634 * 22 21 10 24 24 C 1.38263 * 120.11156 * 0.27879 * 6 5 4 25 25 C 1.38143 * 120.05579 * 359.44512 * 24 6 5 26 26 H 1.08997 * 109.47056 * 300.00350 * 1 2 3 27 27 H 1.08999 * 109.46928 * 59.99960 * 1 2 3 28 28 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.02848 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.97174 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.52358 * 302.32285 * 9 7 6 32 32 H 1.09002 * 109.51852 * 62.50317 * 9 7 6 33 33 H 0.96995 * 120.00093 * 24.56279 * 12 10 9 34 34 H 0.97006 * 119.99655 * 180.02562 * 16 15 13 35 35 H 1.08994 * 109.52522 * 183.12051 * 21 10 9 36 36 H 1.09004 * 109.52280 * 62.92802 * 21 10 9 37 37 H 1.08998 * 109.48204 * 297.62414 * 22 21 10 38 38 H 1.08997 * 109.47940 * 177.59343 * 22 21 10 39 39 H 1.08001 * 119.97259 * 179.69844 * 24 6 5 40 40 H 1.07992 * 120.02923 * 180.27343 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 4.9812 4.9190 -0.4366 9 6 4.1048 5.5323 1.4344 10 6 4.7461 6.9232 1.4198 11 1 4.7836 7.3196 2.4345 12 7 6.1046 6.8306 0.8793 13 6 7.0394 7.7747 1.2112 14 1 6.7752 8.5873 1.8718 15 6 8.3264 7.6873 0.6987 16 7 8.6482 6.6972 -0.1068 17 14 9.6018 8.9747 1.1520 18 1 8.9928 9.9744 2.0657 19 1 10.7482 8.3184 1.8305 20 1 10.0783 9.6543 -0.0793 21 6 3.9059 7.8518 0.5377 22 6 3.7952 7.2483 -0.8649 23 8 3.2194 5.9434 -0.7764 24 6 1.9212 3.6047 0.0031 25 6 1.2916 2.3751 -0.0021 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.0209 0.3798 0.0005 30 1 5.1346 2.5749 0.0008 31 1 3.1130 5.5932 1.8825 32 1 4.7264 4.8505 2.0148 33 1 6.3419 6.1007 0.2863 34 1 9.5477 6.6360 -0.4646 35 1 4.3852 8.8288 0.4770 36 1 2.9099 7.9597 0.9675 37 1 4.7877 7.1782 -1.3098 38 1 3.1627 7.8834 -1.4850 39 1 1.3343 4.5113 0.0068 40 1 0.2130 2.3202 -0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168582790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:19 Heat of formation + Delta-G solvation = -68.197031 kcal Electronic energy + Delta-G solvation = -21558.770414 eV Core-core repulsion = 18338.194827 eV Total energy + Delta-G solvation = -3220.575587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30291 -40.39120 -38.27790 -36.52630 -34.06264 -33.20877 -32.01832 -30.97456 -29.94492 -28.05662 -26.06003 -25.09795 -24.54230 -23.48835 -22.07106 -20.32575 -19.31817 -19.06814 -17.45860 -17.39651 -16.72110 -16.59744 -16.53746 -16.01621 -15.61924 -15.39528 -15.32141 -14.93297 -14.55603 -14.36243 -13.96292 -13.71561 -13.56378 -13.09584 -12.87738 -12.84045 -12.77739 -12.64185 -12.24554 -12.10207 -11.89212 -11.81559 -11.77468 -11.66454 -11.18856 -10.93377 -10.34639 -9.94750 -9.05435 -9.00119 -7.93576 -5.21870 0.37205 0.43113 1.47432 1.47686 1.57488 2.39339 2.56207 2.67669 2.92816 3.39891 3.81215 3.89042 3.89644 3.97803 4.05514 4.21032 4.25322 4.29563 4.37048 4.42611 4.43624 4.50954 4.57678 4.69753 4.74197 4.77724 4.82511 5.02023 5.08625 5.15548 5.16224 5.27341 5.30156 5.35242 5.41377 5.53723 5.68770 5.79032 6.28481 6.32902 6.46718 7.34821 8.09284 8.33279 9.30018 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030930 B = 0.003889 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.050007 B = 7197.502289 C = 7749.597058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.118 3.882 4 C -0.160 4.160 5 C -0.080 4.080 6 C -0.124 4.124 7 C 0.144 3.856 8 H 0.041 0.959 9 C -0.134 4.134 10 C 0.163 3.837 11 H 0.050 0.950 12 N -0.733 5.733 13 C -0.235 4.235 14 H 0.076 0.924 15 C -0.075 4.075 16 N -0.969 5.969 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.296 1.296 20 H -0.296 1.296 21 C -0.161 4.161 22 C 0.072 3.928 23 O -0.383 6.383 24 C -0.058 4.058 25 C -0.206 4.206 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.372 0.628 34 H 0.250 0.750 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.027 0.973 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.670 -9.414 0.694 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.073 3.927 4 C -0.178 4.178 5 C -0.098 4.098 6 C -0.125 4.125 7 C 0.087 3.913 8 H 0.059 0.941 9 C -0.172 4.172 10 C 0.055 3.945 11 H 0.068 0.932 12 N -0.375 5.375 13 C -0.367 4.367 14 H 0.094 0.906 15 C -0.267 4.267 16 N -0.620 5.620 17 Si 0.799 3.201 18 H -0.191 1.191 19 H -0.223 1.223 20 H -0.223 1.223 21 C -0.201 4.201 22 C -0.004 4.004 23 O -0.303 6.303 24 C -0.076 4.076 25 C -0.225 4.225 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.159 0.841 30 H 0.146 0.854 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.126 0.874 39 H 0.155 0.845 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.707 -9.504 0.713 20.995 hybrid contribution 1.455 0.716 -0.057 1.622 sum -17.253 -8.788 0.656 19.373 Atomic orbital electron populations 1.23357 0.76425 1.05593 1.02322 1.86041 1.23527 1.26577 1.88662 1.19164 0.92397 0.84809 0.96378 1.20501 0.92042 0.98376 1.06922 1.20903 1.00254 0.91159 0.97487 1.19582 0.94665 0.93020 1.05210 1.20565 0.92757 0.86692 0.91321 0.94094 1.22304 1.01644 0.96875 0.96379 1.20528 0.84241 0.93932 0.95817 0.93221 1.42677 1.07114 1.30603 1.57071 1.19640 0.91121 1.03832 1.22059 0.90619 1.25500 0.99646 1.00678 1.00916 1.69822 1.19662 1.34313 1.38223 0.85126 0.79194 0.78711 0.77058 1.19054 1.22321 1.22294 1.22639 1.00466 0.99896 0.97129 1.22443 0.97732 0.83234 0.97022 1.87784 1.49144 1.21260 1.72084 1.20899 0.93381 0.97965 0.95387 1.21451 1.01198 0.91381 1.08450 0.91633 0.91758 0.86228 0.84120 0.85368 0.89255 0.91668 0.79492 0.94155 0.92230 0.89953 0.95426 0.87403 0.84531 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.18 10.50 -92.37 -0.97 -8.15 16 3 C 0.12 2.87 6.69 22.51 0.15 3.02 16 4 C -0.16 -4.19 9.99 22.37 0.22 -3.97 16 5 C -0.08 -2.34 9.67 22.25 0.22 -2.12 16 6 C -0.12 -3.79 5.01 -19.85 -0.10 -3.89 16 7 C 0.14 5.01 2.67 29.88 0.08 5.09 16 8 H 0.04 1.68 6.63 -2.39 -0.02 1.66 16 9 C -0.13 -4.54 5.05 30.68 0.16 -4.38 16 10 C 0.16 6.40 3.13 45.11 0.14 6.54 16 11 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 12 N -0.73 -36.40 4.44 -322.39 -1.43 -37.83 16 13 C -0.23 -12.83 9.93 84.03 0.83 -12.00 16 14 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 15 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 16 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 17 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 21 C -0.16 -5.55 5.81 30.69 0.18 -5.37 16 22 C 0.07 2.50 6.68 72.01 0.48 2.98 16 23 O -0.38 -13.21 9.56 -148.98 -1.42 -14.63 16 24 C -0.06 -1.53 9.34 22.25 0.21 -1.32 16 25 C -0.21 -4.62 9.04 22.37 0.20 -4.42 16 26 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 27 H 0.06 0.67 7.66 -2.39 -0.02 0.66 16 28 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 31 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.37 19.96 6.27 -92.71 -0.58 19.38 16 34 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.03 1.15 7.75 -2.39 -0.02 1.13 16 38 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.14 3.33 7.63 -2.91 -0.02 3.31 16 40 H 0.15 2.46 6.30 -2.91 -0.02 2.44 16 Total: -1.00 -65.47 325.84 3.29 -62.19 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.45 Total: 31.50 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 4.35 Total: -22.34 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -1.15 Total: -96.68 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -2.39 Total: -22.78 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -65.47 3.29 -62.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168582790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.012 kcal (2) G-P(sol) polarization free energy of solvation -65.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds