Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99493 * 2 1 4 4 C 1.38728 * 120.05062 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94379 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.05577 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94604 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47915 * 24.97775 * 7 6 5 9 9 C 1.53092 * 109.49147 * 264.94713 * 7 6 5 10 10 C 1.53175 * 109.16344 * 182.40119 * 9 7 6 11 11 H 1.08999 * 109.54476 * 297.11609 * 10 9 7 12 12 N 1.46500 * 109.54071 * 176.84833 * 10 9 7 13 13 C 1.36942 * 119.99969 * 155.00283 * 12 10 9 14 14 H 1.08001 * 120.00023 * 359.97438 * 13 12 10 15 15 C 1.38809 * 120.00319 * 179.97438 * 13 12 10 16 16 N 1.31620 * 119.99923 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00130 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47046 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46792 * 120.00406 * 17 15 13 20 20 H 1.48493 * 109.47190 * 239.99882 * 17 15 13 21 21 C 1.53180 * 109.03606 * 56.98567 * 10 9 7 22 22 C 1.53098 * 109.16075 * 303.01560 * 21 10 9 23 23 O 1.42905 * 109.41155 * 57.61062 * 22 21 10 24 24 C 1.38274 * 120.11322 * 0.27264 * 6 5 4 25 25 C 1.38148 * 120.05064 * 359.45315 * 24 6 5 26 26 H 1.09009 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47407 * 299.99631 * 1 2 3 28 28 H 1.09003 * 109.47342 * 59.99882 * 1 2 3 29 29 H 1.08001 * 120.03358 * 359.96403 * 4 3 2 30 30 H 1.07997 * 119.97375 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.52333 * 302.31335 * 9 7 6 32 32 H 1.09001 * 109.52152 * 62.42979 * 9 7 6 33 33 H 0.96999 * 120.00799 * 334.99878 * 12 10 9 34 34 H 0.96997 * 119.99972 * 179.97438 * 16 15 13 35 35 H 1.08996 * 109.52502 * 62.92172 * 21 10 9 36 36 H 1.08998 * 109.52189 * 183.11552 * 21 10 9 37 37 H 1.09000 * 109.48092 * 297.63128 * 22 21 10 38 38 H 1.08993 * 109.47885 * 177.58982 * 22 21 10 39 39 H 1.07994 * 119.97247 * 179.70745 * 24 6 5 40 40 H 1.08002 * 120.02936 * 180.27748 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 3.9859 5.0186 -0.0005 8 1 4.9811 4.9195 -0.4340 9 6 4.1040 5.5317 1.4370 10 6 4.7457 6.9225 1.4233 11 1 5.7565 6.8538 1.0213 12 7 4.7940 7.4533 2.7879 13 6 5.7333 8.3911 3.1249 14 1 6.4387 8.7391 2.3848 15 6 5.7789 8.8945 4.4177 16 7 4.9196 8.4700 5.3199 17 14 7.0606 10.1732 4.8776 18 1 7.9015 10.4796 3.6925 19 1 6.3817 11.4118 5.3360 20 1 7.9170 9.6451 5.9697 21 6 3.9056 7.8517 0.5416 22 6 3.7952 7.2490 -0.8614 23 8 3.2192 5.9441 -0.7737 24 6 1.9209 3.6048 0.0052 25 6 1.2914 2.3751 0.0000 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.0208 0.3800 0.0015 30 1 5.1344 2.5751 0.0008 31 1 3.1120 5.5925 1.8847 32 1 4.7244 4.8490 2.0176 33 1 4.1608 7.1406 3.4528 34 1 4.9516 8.8214 6.2234 35 1 2.9096 7.9594 0.9712 36 1 4.3850 8.8287 0.4816 37 1 4.7879 7.1790 -1.3061 38 1 3.1628 7.8845 -1.4812 39 1 1.3341 4.5114 0.0095 40 1 0.2128 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168582791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -51.853760 kcal Electronic energy + Delta-G solvation = -21205.716073 eV Core-core repulsion = 17985.849184 eV Total energy + Delta-G solvation = -3219.866889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30060 -39.15503 -37.28183 -35.00933 -32.28276 -32.01147 -31.08073 -29.38296 -28.80383 -27.28074 -24.59459 -23.27031 -22.92785 -22.31566 -20.79378 -19.63073 -18.24521 -17.14874 -16.47200 -16.28453 -15.87348 -15.46659 -14.86268 -14.58421 -14.45342 -13.98446 -13.71634 -13.63336 -13.49421 -13.20447 -12.83689 -12.64799 -12.40578 -12.10913 -11.63873 -11.19181 -11.06732 -10.94846 -10.92023 -10.80846 -10.71255 -10.36522 -10.17193 -9.82117 -9.74786 -9.22709 -8.99378 -8.89564 -8.09085 -6.97799 -5.78032 -3.07196 1.32861 1.41029 3.14245 3.41895 3.47375 3.49775 3.69151 4.03521 4.56845 4.73612 4.83581 4.94055 4.94890 4.98325 5.23466 5.31487 5.34881 5.35968 5.42474 5.48822 5.54708 5.58082 5.68155 5.75877 5.87809 5.96001 6.05631 6.21696 6.26753 6.36368 6.41863 6.44932 6.58630 6.66728 6.71216 6.84970 7.06017 7.29557 7.52813 7.68401 8.40172 9.51450 10.08932 10.44000 11.44604 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.003545 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.686201 B = 7897.017429 C = 8368.915651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.120 3.880 4 C -0.153 4.153 5 C -0.071 4.071 6 C -0.108 4.108 7 C 0.140 3.860 8 H 0.064 0.936 9 C -0.146 4.146 10 C 0.178 3.822 11 H 0.047 0.953 12 N -0.723 5.723 13 C -0.239 4.239 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.291 1.291 21 C -0.172 4.172 22 C 0.065 3.935 23 O -0.382 6.382 24 C -0.052 4.052 25 C -0.210 4.210 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 -13.815 -13.495 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.172 4.172 5 C -0.090 4.090 6 C -0.108 4.108 7 C 0.081 3.919 8 H 0.081 0.919 9 C -0.185 4.185 10 C 0.068 3.932 11 H 0.065 0.935 12 N -0.363 5.363 13 C -0.370 4.370 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.580 5.580 17 Si 0.737 3.263 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.213 4.213 22 C -0.013 4.013 23 O -0.301 6.301 24 C -0.070 4.070 25 C -0.229 4.229 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.149 0.851 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.102 -13.932 -13.544 20.687 hybrid contribution 0.383 0.969 0.758 1.289 sum -6.719 -12.962 -12.786 19.407 Atomic orbital electron populations 1.23032 0.78570 1.03694 1.01441 1.86044 1.21271 1.27187 1.88937 1.19040 0.92403 0.84022 0.96996 1.20320 0.91293 0.98393 1.07149 1.20769 0.99915 0.90744 0.97532 1.19600 0.93934 0.93766 1.03513 1.20761 0.93262 0.85975 0.91855 0.91856 1.22489 1.02350 0.98421 0.95229 1.20215 0.95832 0.89810 0.87358 0.93523 1.42424 1.39295 1.48560 1.06023 1.19284 1.08449 1.14516 0.94779 0.91148 1.24753 0.99355 1.00627 0.96242 1.69675 1.38308 1.46603 1.03434 0.86129 0.80871 0.81193 0.78074 1.20557 1.21877 1.21854 1.22946 1.02209 1.01122 0.95025 1.22605 0.97796 0.83306 0.97544 1.87837 1.49526 1.21033 1.71726 1.20829 0.94139 0.97094 0.94946 1.21235 0.99920 0.92328 1.09415 0.88437 0.92598 0.92712 0.85247 0.85162 0.91249 0.90888 0.78208 0.93544 0.91709 0.91149 0.93687 0.89596 0.85093 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.65 10.50 -19.42 -0.20 -3.86 16 3 C 0.12 1.49 6.69 -39.22 -0.26 1.23 16 4 C -0.15 -1.85 9.99 -39.43 -0.39 -2.25 16 5 C -0.07 -0.89 9.67 -39.61 -0.38 -1.27 16 6 C -0.11 -1.50 5.01 -104.60 -0.52 -2.02 16 7 C 0.14 2.07 2.85 -27.84 -0.08 1.99 16 8 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 9 C -0.15 -2.53 4.88 -26.59 -0.13 -2.65 16 10 C 0.18 3.55 2.86 -67.75 -0.19 3.35 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 N -0.72 -18.19 5.13 -53.25 -0.27 -18.47 16 13 C -0.24 -6.62 9.94 -15.06 -0.15 -6.77 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 17 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 C -0.17 -3.09 5.73 -26.59 -0.15 -3.24 16 22 C 0.06 0.95 6.84 37.21 0.25 1.20 16 23 O -0.38 -5.92 9.56 -35.23 -0.34 -6.26 16 24 C -0.05 -0.70 9.34 -39.60 -0.37 -1.07 16 25 C -0.21 -2.54 9.04 -39.43 -0.36 -2.90 16 26 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.38 10.35 7.80 -40.82 -0.32 10.03 16 34 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.13 1.76 7.63 -52.49 -0.40 1.36 16 40 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -31.38 329.69 -8.02 -39.40 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.03 Total: 8.07 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -1.84 Total: -13.68 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.45 Total: -45.97 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.54 Total: -10.12 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.38 -8.02 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168582791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.452 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds