Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99493 * 2 1 4 4 C 1.38728 * 120.05062 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94379 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.05577 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94604 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47915 * 24.97775 * 7 6 5 9 9 C 1.53092 * 109.49147 * 264.94713 * 7 6 5 10 10 C 1.53175 * 109.16344 * 182.40119 * 9 7 6 11 11 H 1.08999 * 109.54476 * 297.11609 * 10 9 7 12 12 N 1.46500 * 109.54071 * 176.84833 * 10 9 7 13 13 C 1.36942 * 119.99969 * 155.00283 * 12 10 9 14 14 H 1.08001 * 120.00023 * 359.97438 * 13 12 10 15 15 C 1.38809 * 120.00319 * 179.97438 * 13 12 10 16 16 N 1.31620 * 119.99923 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00130 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47046 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46792 * 120.00406 * 17 15 13 20 20 H 1.48493 * 109.47190 * 239.99882 * 17 15 13 21 21 C 1.53180 * 109.03606 * 56.98567 * 10 9 7 22 22 C 1.53098 * 109.16075 * 303.01560 * 21 10 9 23 23 O 1.42905 * 109.41155 * 57.61062 * 22 21 10 24 24 C 1.38274 * 120.11322 * 0.27264 * 6 5 4 25 25 C 1.38148 * 120.05064 * 359.45315 * 24 6 5 26 26 H 1.09009 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47407 * 299.99631 * 1 2 3 28 28 H 1.09003 * 109.47342 * 59.99882 * 1 2 3 29 29 H 1.08001 * 120.03358 * 359.96403 * 4 3 2 30 30 H 1.07997 * 119.97375 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.52333 * 302.31335 * 9 7 6 32 32 H 1.09001 * 109.52152 * 62.42979 * 9 7 6 33 33 H 0.96999 * 120.00799 * 334.99878 * 12 10 9 34 34 H 0.96997 * 119.99972 * 179.97438 * 16 15 13 35 35 H 1.08996 * 109.52502 * 62.92172 * 21 10 9 36 36 H 1.08998 * 109.52189 * 183.11552 * 21 10 9 37 37 H 1.09000 * 109.48092 * 297.63128 * 22 21 10 38 38 H 1.08993 * 109.47885 * 177.58982 * 22 21 10 39 39 H 1.07994 * 119.97247 * 179.70745 * 24 6 5 40 40 H 1.08002 * 120.02936 * 180.27748 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 3.9859 5.0186 -0.0005 8 1 4.9811 4.9195 -0.4340 9 6 4.1040 5.5317 1.4370 10 6 4.7457 6.9225 1.4233 11 1 5.7565 6.8538 1.0213 12 7 4.7940 7.4533 2.7879 13 6 5.7333 8.3911 3.1249 14 1 6.4387 8.7391 2.3848 15 6 5.7789 8.8945 4.4177 16 7 4.9196 8.4700 5.3199 17 14 7.0606 10.1732 4.8776 18 1 7.9015 10.4796 3.6925 19 1 6.3817 11.4118 5.3360 20 1 7.9170 9.6451 5.9697 21 6 3.9056 7.8517 0.5416 22 6 3.7952 7.2490 -0.8614 23 8 3.2192 5.9441 -0.7737 24 6 1.9209 3.6048 0.0052 25 6 1.2914 2.3751 0.0000 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.0208 0.3800 0.0015 30 1 5.1344 2.5751 0.0008 31 1 3.1120 5.5925 1.8847 32 1 4.7244 4.8490 2.0176 33 1 4.1608 7.1406 3.4528 34 1 4.9516 8.8214 6.2234 35 1 2.9096 7.9594 0.9712 36 1 4.3850 8.8287 0.4816 37 1 4.7879 7.1790 -1.3061 38 1 3.1628 7.8845 -1.4812 39 1 1.3341 4.5114 0.0095 40 1 0.2128 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168582791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -71.272336 kcal Electronic energy + Delta-G solvation = -21206.558126 eV Core-core repulsion = 17985.849184 eV Total energy + Delta-G solvation = -3220.708942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27190 -40.32057 -38.26226 -36.73130 -34.08397 -33.22872 -32.02164 -31.14210 -29.94371 -28.07274 -26.32030 -24.56723 -24.32954 -23.43184 -21.89819 -21.11815 -19.19678 -19.10348 -17.53168 -17.46690 -16.65107 -16.59179 -16.46478 -15.94386 -15.69477 -15.42542 -15.20212 -14.94801 -14.54459 -14.36939 -14.27221 -13.96538 -13.47932 -12.98633 -12.91051 -12.84250 -12.75427 -12.37693 -12.29035 -12.11629 -11.97019 -11.86427 -11.76680 -11.63941 -11.23549 -10.90854 -10.51056 -9.93873 -9.07831 -9.02085 -7.95263 -5.24645 0.38112 0.43274 1.46776 1.47393 1.57447 2.39070 2.54485 2.67950 2.92146 3.37722 3.73225 3.85969 3.89452 3.97087 4.04071 4.15452 4.22407 4.33885 4.35462 4.40515 4.48690 4.49814 4.56161 4.63350 4.73869 4.76466 4.80960 4.83308 4.98650 5.10502 5.15615 5.29220 5.32293 5.41577 5.48026 5.53360 5.66310 5.79611 6.26263 6.32181 6.45256 7.32077 8.06900 8.30827 9.28509 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.003545 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.686201 B = 7897.017429 C = 8368.915651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.115 3.885 4 C -0.161 4.161 5 C -0.072 4.072 6 C -0.127 4.127 7 C 0.148 3.852 8 H 0.078 0.922 9 C -0.135 4.135 10 C 0.171 3.829 11 H 0.048 0.952 12 N -0.737 5.737 13 C -0.238 4.238 14 H 0.078 0.922 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.973 3.027 18 H -0.264 1.264 19 H -0.295 1.295 20 H -0.294 1.294 21 C -0.164 4.164 22 C 0.071 3.929 23 O -0.387 6.387 24 C -0.065 4.065 25 C -0.212 4.212 26 H 0.121 0.879 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.371 0.629 34 H 0.250 0.750 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 -14.576 -15.180 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.179 4.179 5 C -0.090 4.090 6 C -0.127 4.127 7 C 0.090 3.910 8 H 0.096 0.904 9 C -0.173 4.173 10 C 0.063 3.937 11 H 0.066 0.934 12 N -0.376 5.376 13 C -0.369 4.369 14 H 0.095 0.905 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.802 3.198 18 H -0.188 1.188 19 H -0.222 1.222 20 H -0.221 1.221 21 C -0.204 4.204 22 C -0.006 4.006 23 O -0.306 6.306 24 C -0.083 4.083 25 C -0.231 4.231 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.202 0.798 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.804 -14.706 -15.292 22.280 hybrid contribution 0.216 1.101 1.227 1.663 sum -6.588 -13.605 -14.064 20.647 Atomic orbital electron populations 1.23334 0.76615 1.05562 1.02129 1.86035 1.23347 1.26662 1.88682 1.19239 0.92805 0.84526 0.96429 1.20596 0.91636 0.98938 1.06732 1.20981 1.00854 0.90359 0.96825 1.19609 0.94267 0.93607 1.05223 1.20701 0.94200 0.86294 0.89841 0.90385 1.22345 1.00954 0.96768 0.97263 1.20471 0.96589 0.91484 0.85191 0.93381 1.42650 1.38618 1.48482 1.07888 1.19667 1.08311 1.14104 0.94842 0.90454 1.25578 1.01742 1.03215 0.96458 1.69835 1.40423 1.48391 1.03554 0.85079 0.78459 0.78345 0.77929 1.18829 1.22198 1.22127 1.22774 1.00485 1.00320 0.96845 1.22642 0.99479 0.83101 0.95390 1.87855 1.50018 1.21262 1.71483 1.20898 0.94229 0.97550 0.95631 1.21421 1.01052 0.91748 1.08873 0.86118 0.92135 0.91749 0.83632 0.83373 0.92749 0.91392 0.79774 0.94091 0.93388 0.92122 0.91915 0.87198 0.85635 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.98 10.50 -92.40 -0.97 -7.95 16 3 C 0.12 2.69 6.69 22.51 0.15 2.84 16 4 C -0.16 -3.63 9.99 22.37 0.22 -3.41 16 5 C -0.07 -1.68 9.67 22.25 0.22 -1.47 16 6 C -0.13 -3.39 5.01 -19.85 -0.10 -3.49 16 7 C 0.15 4.20 2.85 29.88 0.09 4.29 16 8 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 9 C -0.13 -4.65 4.88 30.68 0.15 -4.50 16 10 C 0.17 6.79 2.86 45.11 0.13 6.92 16 11 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 12 N -0.74 -37.75 5.13 -322.38 -1.65 -39.40 16 13 C -0.24 -13.20 9.94 84.03 0.83 -12.37 16 14 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 15 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 16 N -0.97 -60.15 13.06 21.65 0.28 -59.86 16 17 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 C -0.16 -5.79 5.73 30.69 0.18 -5.61 16 22 C 0.07 1.92 6.84 72.01 0.49 2.42 16 23 O -0.39 -11.36 9.56 -148.98 -1.42 -12.78 16 24 C -0.06 -1.70 9.34 22.26 0.21 -1.50 16 25 C -0.21 -4.86 9.04 22.37 0.20 -4.66 16 26 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 28 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 29 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.37 20.65 7.80 -92.71 -0.72 19.93 16 34 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.13 3.34 7.63 -2.91 -0.02 3.32 16 40 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 Total: -1.00 -67.29 329.69 2.92 -64.37 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.31 Total: 30.56 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 4.35 Total: -23.22 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -1.37 Total: -99.27 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -2.39 Total: -20.74 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -67.29 2.92 -64.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168582791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.898 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds