Wall clock time and date at job start Mon Mar 30 2020 01:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35956 * 117.00077 * 2 1 4 4 C 1.39411 * 119.82594 * 0.02562 * 3 2 1 5 5 C 1.38093 * 120.57434 * 179.97438 * 4 3 2 6 6 C 1.38718 * 120.20188 * 0.02562 * 5 4 3 7 7 N 1.38851 * 120.17812 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00660 * 0.02562 * 7 6 5 9 9 H 1.09004 * 109.51818 * 34.87107 * 8 7 6 10 10 C 1.53171 * 109.52467 * 154.99221 * 8 7 6 11 11 C 1.53180 * 109.03439 * 176.88504 * 10 8 7 12 12 C 1.53094 * 109.16662 * 303.02140 * 11 10 8 13 13 O 1.42902 * 109.41254 * 57.60547 * 12 11 10 14 14 C 1.42902 * 114.10069 * 298.84761 * 13 12 11 15 15 C 1.41538 * 119.63475 * 359.97438 * 6 5 4 16 16 C 1.41029 * 120.27705 * 180.02562 * 15 6 5 17 17 H 1.07999 * 119.99885 * 25.43861 * 16 15 6 18 18 C 1.39904 * 120.00457 * 205.44340 * 16 15 6 19 19 N 1.30892 * 119.99539 * 15.15551 * 18 16 15 20 20 Si 1.86792 * 120.00189 * 195.15589 * 18 16 15 21 21 H 1.48503 * 109.47078 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47186 * 119.99860 * 20 18 16 23 23 H 1.48503 * 109.47255 * 239.99913 * 20 18 16 24 24 C 1.37846 * 119.81789 * 179.72472 * 3 2 1 25 25 H 1.09006 * 109.46963 * 59.99770 * 1 2 3 26 26 H 1.08997 * 109.47253 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46944 * 300.00370 * 1 2 3 28 28 H 1.07999 * 119.71199 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.89907 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99347 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.54791 * 296.75614 * 10 8 7 32 32 H 1.09007 * 109.54387 * 56.93384 * 10 8 7 33 33 H 1.08997 * 109.52539 * 62.92996 * 11 10 8 34 34 H 1.09006 * 109.52239 * 183.05487 * 11 10 8 35 35 H 1.08999 * 109.48444 * 177.58891 * 12 11 10 36 36 H 1.09003 * 109.48056 * 297.62712 * 12 11 10 37 37 H 1.08997 * 109.47856 * 301.17185 * 14 13 12 38 38 H 1.09003 * 109.47978 * 181.13908 * 14 13 12 39 39 H 0.96997 * 119.99630 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.10921 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2834 2.3783 0.0005 5 6 1.8942 3.6168 0.0011 6 6 3.2781 3.7123 0.0006 7 7 3.8918 4.9579 0.0006 8 6 3.0776 6.1757 0.0017 9 1 2.1749 6.0098 0.5897 10 6 3.8811 7.3282 0.6118 11 6 3.0492 8.6122 0.5364 12 6 2.6669 8.8785 -0.9219 13 8 1.9492 7.7555 -1.4375 14 6 2.6942 6.5361 -1.4359 15 6 4.0610 2.5332 0.0000 16 6 5.4690 2.6146 0.0000 17 1 5.9593 3.4887 0.4022 18 6 6.2305 1.5629 -0.5210 19 7 5.6619 0.6505 -1.2675 20 14 8.0587 1.4610 -0.1512 21 1 8.4544 2.6055 0.7084 22 1 8.3508 0.1873 0.5542 23 1 8.8244 1.5096 -1.4227 24 6 3.4230 1.2791 0.0057 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2054 2.3131 0.0014 29 1 1.2926 4.5137 0.0011 30 1 4.8597 5.0216 0.0006 31 1 4.1095 7.1023 1.6534 32 1 4.8092 7.4603 0.0554 33 1 2.1454 8.4963 1.1345 34 1 3.6344 9.4484 0.9191 35 1 2.0388 9.7676 -0.9765 36 1 3.5702 9.0345 -1.5118 37 1 3.5977 6.6614 -2.0325 38 1 2.0856 5.7378 -1.8609 39 1 6.1898 -0.0789 -1.6284 40 1 4.0100 0.3726 0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169665777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:34 Heat of formation + Delta-G solvation = -84.179386 kcal Electronic energy + Delta-G solvation = -21786.878086 eV Core-core repulsion = 18565.609452 eV Total energy + Delta-G solvation = -3221.268634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75456 -40.11057 -38.47830 -36.11636 -35.09255 -33.63458 -31.72165 -30.91632 -29.12127 -27.25458 -26.86186 -25.95041 -24.22251 -22.82673 -21.64120 -21.09841 -19.42917 -18.05968 -17.55299 -17.34413 -17.01963 -16.69134 -16.34222 -16.24696 -15.86889 -15.69052 -15.04457 -14.63993 -14.38400 -14.00287 -13.67013 -13.64188 -13.46617 -13.25762 -13.00713 -12.80705 -12.76347 -12.51190 -12.24319 -12.08946 -11.92175 -11.81677 -11.64256 -11.33811 -11.11237 -10.98700 -10.66726 -9.91441 -9.31085 -8.56741 -7.76745 -6.10523 0.99222 1.32090 1.40746 1.53117 1.54879 2.24019 2.67800 2.83233 2.91628 3.21969 3.76231 3.77892 3.95570 4.05325 4.12886 4.24129 4.38429 4.50130 4.50828 4.54048 4.58049 4.67668 4.75959 4.80469 4.85370 4.95502 5.03699 5.09379 5.13511 5.23554 5.30340 5.34117 5.59950 5.74502 5.83510 6.02465 6.20955 6.23177 6.40807 6.81073 6.98386 7.04268 7.23581 7.35063 8.44632 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012455 B = 0.006513 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.465469 B = 4297.848974 C = 6192.268331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.080 3.920 4 C -0.271 4.271 5 C -0.155 4.155 6 C 0.093 3.907 7 N -0.737 5.737 8 C 0.131 3.869 9 H 0.068 0.932 10 C -0.125 4.125 11 C -0.143 4.143 12 C 0.049 3.951 13 O -0.400 6.400 14 C 0.054 3.946 15 C 0.066 3.934 16 C -0.483 4.483 17 H 0.083 0.917 18 C 0.031 3.969 19 N -0.832 5.832 20 Si 0.979 3.021 21 H -0.253 1.253 22 H -0.273 1.273 23 H -0.270 1.270 24 C -0.203 4.203 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.054 0.946 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.395 0.605 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.282 0.718 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 11.767 2.273 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.035 3.965 4 C -0.292 4.292 5 C -0.179 4.179 6 C -0.007 4.007 7 N -0.372 5.372 8 C 0.025 3.975 9 H 0.086 0.914 10 C -0.163 4.163 11 C -0.181 4.181 12 C -0.027 4.027 13 O -0.318 6.318 14 C -0.025 4.025 15 C 0.062 3.938 16 C -0.513 4.513 17 H 0.101 0.899 18 C -0.183 4.183 19 N -0.459 5.459 20 Si 0.800 3.200 21 H -0.176 1.176 22 H -0.198 1.198 23 H -0.195 1.195 24 C -0.224 4.224 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.230 0.770 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.629 11.519 2.065 12.252 hybrid contribution 1.055 -0.586 -0.047 1.207 sum -2.574 10.933 2.018 11.412 Atomic orbital electron populations 1.23065 0.78129 1.04181 1.01161 1.85950 1.22315 1.28547 1.90312 1.18910 0.92160 0.83738 1.01694 1.20508 0.98312 0.91591 1.18771 1.20105 0.92253 0.96561 1.08977 1.17958 0.91447 0.85819 1.05446 1.43936 1.07410 1.00954 1.84887 1.21315 0.95127 0.85235 0.95857 0.91441 1.21846 0.98823 0.93934 1.01723 1.22148 1.00794 0.97530 0.97669 1.22866 0.97488 0.88842 0.93490 1.87906 1.41920 1.17667 1.84321 1.23001 0.96117 0.86188 0.97183 1.17304 0.93703 0.89334 0.93504 1.19431 0.91068 1.04015 1.36803 0.89897 1.26695 1.05343 0.94087 0.92149 1.69969 1.39896 1.11657 1.24356 0.85205 0.76566 0.79286 0.78897 1.17584 1.19803 1.19534 1.20319 0.90406 0.98258 1.13463 0.93154 0.86873 0.92753 0.86200 0.86727 0.76981 0.90878 0.90997 0.91069 0.88040 0.86793 0.92550 0.93267 0.90678 0.90749 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.81 113.37 1.11 2.07 16 2 O -0.36 -16.53 10.49 -93.06 -0.98 -17.50 16 3 C 0.08 4.06 6.67 22.46 0.15 4.21 16 4 C -0.27 -12.37 9.03 22.52 0.20 -12.17 16 5 C -0.16 -6.95 8.86 22.35 0.20 -6.75 16 6 C 0.09 4.41 6.67 38.96 0.26 4.66 16 7 N -0.74 -28.71 5.15 -317.13 -1.63 -30.35 16 8 C 0.13 4.10 2.34 45.08 0.11 4.21 16 9 H 0.07 2.25 6.47 -2.38 -0.02 2.23 16 10 C -0.13 -2.97 5.50 30.71 0.17 -2.80 16 11 C -0.14 -2.63 6.14 30.69 0.19 -2.44 16 12 C 0.05 0.97 6.84 72.01 0.49 1.47 16 13 O -0.40 -11.33 10.77 -148.98 -1.60 -12.93 16 14 C 0.05 1.68 6.37 72.01 0.46 2.14 16 15 C 0.07 3.58 5.58 -21.18 -0.12 3.46 16 16 C -0.48 -25.29 8.50 23.36 0.20 -25.09 16 17 H 0.08 4.03 6.67 -2.91 -0.02 4.01 16 18 C 0.03 1.57 5.19 85.24 0.44 2.01 16 19 N -0.83 -45.45 10.88 21.82 0.24 -45.21 16 20 Si 0.98 38.69 29.59 68.60 2.03 40.72 16 21 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 24 C -0.20 -11.46 8.60 22.78 0.20 -11.27 16 25 H 0.05 1.55 7.65 -2.38 -0.02 1.53 16 26 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.05 1.63 7.65 -2.39 -0.02 1.61 16 28 H 0.12 4.69 6.26 -2.91 -0.02 4.67 16 29 H 0.11 4.55 6.07 -2.91 -0.02 4.53 16 30 H 0.39 15.28 6.82 -92.71 -0.63 14.65 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 2.66 7.71 -2.39 -0.02 2.64 16 39 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 40 H 0.10 6.07 6.15 -2.91 -0.02 6.05 16 Total: -1.00 -64.13 319.16 2.53 -61.60 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: 0.42 Total: 39.96 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 4.05 Total: -36.29 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -1.40 Total: -75.56 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -2.58 Total: -30.43 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -64.13 2.53 -61.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169665777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.579 kcal (2) G-P(sol) polarization free energy of solvation -64.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds