Wall clock time and date at job start Mon Mar 30 2020 01:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35671 * 116.99969 * 2 1 4 4 C 1.38044 * 120.21056 * 359.97438 * 3 2 1 5 5 C 1.39212 * 119.98180 * 179.74470 * 4 3 2 6 6 N 1.38917 * 119.79709 * 180.27510 * 5 4 3 7 7 C 1.46507 * 119.99787 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.52042 * 34.87500 * 7 6 5 9 9 C 1.53180 * 109.52100 * 155.00442 * 7 6 5 10 10 C 1.53178 * 109.03679 * 176.88805 * 9 7 6 11 11 C 1.53096 * 109.16042 * 303.02009 * 10 9 7 12 12 O 1.42895 * 109.41774 * 57.60791 * 11 10 9 13 13 C 1.42909 * 114.10081 * 298.84247 * 12 11 10 14 14 C 1.39728 * 120.40559 * 0.25754 * 5 4 3 15 15 C 1.36228 * 120.42392 * 359.97438 * 14 5 4 16 16 C 1.40855 * 120.01457 * 0.04401 * 15 14 5 17 17 C 1.40961 * 120.20163 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00275 * 204.84063 * 17 16 15 19 19 C 1.39851 * 119.99971 * 24.84476 * 17 16 15 20 20 N 1.30956 * 119.99882 * 17.83567 * 19 17 16 21 21 Si 1.86801 * 119.99952 * 197.83195 * 19 17 16 22 22 H 1.48501 * 109.47151 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46961 * 120.00338 * 21 19 17 24 24 H 1.48493 * 109.47200 * 239.99820 * 21 19 17 25 25 H 1.09006 * 109.46833 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47527 * 299.99821 * 1 2 3 27 27 H 1.08994 * 109.47672 * 60.00197 * 1 2 3 28 28 H 1.08002 * 120.00819 * 0.02562 * 4 3 2 29 29 H 0.96992 * 120.00515 * 0.02562 * 6 5 4 30 30 H 1.09008 * 109.53749 * 296.74999 * 9 7 6 31 31 H 1.08996 * 109.54591 * 57.01550 * 9 7 6 32 32 H 1.08998 * 109.52281 * 62.91903 * 10 9 7 33 33 H 1.08999 * 109.52313 * 183.04935 * 10 9 7 34 34 H 1.08996 * 109.47968 * 177.59505 * 11 10 9 35 35 H 1.09000 * 109.47622 * 297.61190 * 11 10 9 36 36 H 1.09004 * 109.47895 * 301.17880 * 13 12 11 37 37 H 1.08995 * 109.48473 * 181.14196 * 13 12 11 38 38 H 1.07992 * 119.78817 * 180.02562 * 14 5 4 39 39 H 1.08006 * 119.99179 * 180.02562 * 15 14 5 40 40 H 0.96994 * 119.99633 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2973 2.3693 -0.0005 5 6 1.9342 3.6072 0.0048 6 7 1.1781 4.7726 0.0101 7 6 1.8438 6.0776 0.0152 8 1 2.7599 6.0215 -0.5730 9 6 0.9105 7.1307 -0.5900 10 6 1.5859 8.5031 -0.5082 11 6 1.9342 8.8055 0.9516 12 8 2.7788 7.7723 1.4623 13 6 2.1821 6.4737 1.4548 14 6 3.3293 3.6846 0.0054 15 6 4.0832 2.5500 0.0012 16 6 3.4573 1.2882 -0.0047 17 6 4.2336 0.1116 -0.0096 18 1 3.8227 -0.8048 -0.4068 19 6 5.5358 0.1309 0.4999 20 7 5.9174 1.1073 1.2847 21 14 6.7308 -1.2362 0.0611 22 1 6.0593 -2.2120 -0.8346 23 1 7.9104 -0.6589 -0.6322 24 1 7.1729 -1.9240 1.3006 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2185 2.3169 -0.0005 29 1 0.2095 4.7223 0.0103 30 1 0.7104 6.8843 -1.6329 31 1 -0.0260 7.1514 -0.0328 32 1 2.4972 8.4968 -1.1063 33 1 0.9067 9.2666 -0.8874 34 1 2.4535 9.7620 1.0107 35 1 1.0188 8.8519 1.5415 36 1 1.2700 6.4894 2.0513 37 1 2.8800 5.7504 1.8764 38 1 3.8130 4.6502 0.0100 39 1 5.1611 2.6180 0.0020 40 1 6.8205 1.1205 1.6383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169666473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:37 Heat of formation + Delta-G solvation = -62.656570 kcal Electronic energy + Delta-G solvation = -21607.289583 eV Core-core repulsion = 18386.954249 eV Total energy + Delta-G solvation = -3220.335334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.50885 -38.56701 -36.64548 -34.95153 -33.40994 -32.32078 -30.13316 -28.83697 -27.94267 -26.46934 -24.99866 -24.35953 -22.81401 -21.19174 -20.43582 -19.67068 -17.34498 -16.69603 -16.45746 -15.98288 -15.49476 -14.92135 -14.77586 -14.71746 -14.59237 -14.27145 -13.79821 -13.34256 -12.81019 -12.67599 -12.60890 -12.21890 -12.13030 -11.58495 -11.55153 -11.23022 -11.08565 -10.95699 -10.84843 -10.58112 -10.45738 -10.41017 -10.26351 -9.69444 -9.54177 -9.48207 -9.07238 -8.37391 -7.12929 -6.61758 -6.38630 -3.91679 2.90925 3.02049 3.20887 3.27442 3.32817 3.79966 4.12706 4.30045 4.56690 4.75341 4.78038 4.79061 4.93861 5.13099 5.25064 5.41318 5.54416 5.69758 5.71219 5.76398 5.79572 5.88003 5.89364 5.94349 5.99251 6.16630 6.19659 6.27952 6.46609 6.75964 6.96872 7.13206 7.27339 7.36428 7.53259 7.76189 7.97840 8.13806 8.39641 8.55393 8.64120 8.86971 9.05981 9.23495 10.44168 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.004753 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.329341 B = 5889.204589 C = 7001.796639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.048 3.952 4 C -0.241 4.241 5 C 0.123 3.877 6 N -0.751 5.751 7 C 0.132 3.868 8 H 0.083 0.917 9 C -0.129 4.129 10 C -0.152 4.152 11 C 0.058 3.942 12 O -0.382 6.382 13 C 0.045 3.955 14 C -0.189 4.189 15 C -0.102 4.102 16 C 0.062 3.938 17 C -0.449 4.449 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.811 5.811 21 Si 0.903 3.097 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.278 1.278 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.384 0.616 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.432 10.531 -1.903 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.224 6.224 3 C 0.002 3.998 4 C -0.264 4.264 5 C 0.025 3.975 6 N -0.386 5.386 7 C 0.025 3.975 8 H 0.101 0.899 9 C -0.167 4.167 10 C -0.190 4.190 11 C -0.019 4.019 12 O -0.299 6.299 13 C -0.033 4.033 14 C -0.211 4.211 15 C -0.122 4.122 16 C 0.059 3.941 17 C -0.481 4.481 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.439 5.439 21 Si 0.728 3.272 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.203 1.203 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.217 0.783 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.144 0.856 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.789 10.547 -1.697 13.221 hybrid contribution -0.432 -0.452 -0.153 0.644 sum -8.221 10.095 -1.850 13.150 Atomic orbital electron populations 1.22707 0.81943 1.01589 0.99790 1.85993 1.18065 1.28297 1.90035 1.18970 0.92168 0.82090 1.06544 1.20041 0.97046 0.91482 1.17805 1.17029 0.90435 0.84581 1.05432 1.43847 1.06329 1.01753 1.86702 1.21206 0.96747 0.83626 0.95911 0.89914 1.21863 0.98600 0.94420 1.01806 1.22174 1.01582 0.97118 0.98137 1.22558 0.94821 0.91476 0.93072 1.87967 1.41655 1.16467 1.83853 1.23262 0.98876 0.83949 0.97262 1.20083 0.91286 0.97887 1.11858 1.20718 0.99593 0.90226 1.01703 1.16944 0.87092 0.94081 0.95997 1.19245 0.96756 0.96617 1.35447 0.90454 1.25777 0.98837 0.96637 0.93005 1.69873 1.18907 1.31393 1.23737 0.86346 0.80194 0.81535 0.79088 1.18623 1.20052 1.20348 0.90152 0.94260 0.94352 0.88673 0.78341 0.91057 0.91870 0.90787 0.90923 0.89126 0.93525 0.93574 0.88039 0.88922 0.85645 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.31 -7.31 9.78 -18.72 -0.18 -7.49 16 3 C 0.05 1.19 6.71 -38.42 -0.26 0.94 16 4 C -0.24 -5.33 8.86 -39.29 -0.35 -5.68 16 5 C 0.12 2.61 6.65 -83.73 -0.56 2.05 16 6 N -0.75 -12.58 5.22 -51.93 -0.27 -12.85 16 7 C 0.13 1.96 2.33 -67.79 -0.16 1.81 16 8 H 0.08 1.38 6.44 -51.93 -0.33 1.05 16 9 C -0.13 -1.47 5.50 -26.55 -0.15 -1.61 16 10 C -0.15 -1.51 6.14 -26.59 -0.16 -1.67 16 11 C 0.06 0.62 6.84 37.21 0.25 0.87 16 12 O -0.38 -5.60 10.77 -35.23 -0.38 -5.98 16 13 C 0.04 0.68 6.36 37.20 0.24 0.92 16 14 C -0.19 -4.37 8.78 -39.75 -0.35 -4.72 16 15 C -0.10 -2.67 8.62 -39.32 -0.34 -3.01 16 16 C 0.06 1.70 5.58 -106.65 -0.60 1.11 16 17 C -0.45 -12.53 8.70 -37.95 -0.33 -12.86 16 18 H 0.08 2.16 7.65 -52.49 -0.40 1.76 16 19 C 0.07 1.88 5.13 -17.32 -0.09 1.79 16 20 N -0.81 -21.76 10.97 55.54 0.61 -21.15 16 21 Si 0.90 19.72 29.60 -169.99 -5.03 14.69 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 27 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.10 1.85 6.29 -52.49 -0.33 1.51 16 29 H 0.38 5.69 8.60 -40.82 -0.35 5.34 16 30 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 1.77 7.68 -51.93 -0.40 1.37 16 38 H 0.09 1.99 6.02 -52.49 -0.32 1.67 16 39 H 0.13 3.40 6.17 -52.48 -0.32 3.07 16 40 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -29.59 321.29 -8.03 -37.63 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.77 Total: 8.78 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -1.85 Total: -18.46 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.34 Total: -34.00 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.56 Total: -13.47 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.59 -8.03 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169666473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.030 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds