Wall clock time and date at job start Mon Mar 30 2020 01:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35671 * 116.99969 * 2 1 4 4 C 1.38044 * 120.21056 * 359.97438 * 3 2 1 5 5 C 1.39212 * 119.98180 * 179.74470 * 4 3 2 6 6 N 1.38917 * 119.79709 * 180.27510 * 5 4 3 7 7 C 1.46507 * 119.99787 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.52042 * 34.87500 * 7 6 5 9 9 C 1.53180 * 109.52100 * 155.00442 * 7 6 5 10 10 C 1.53178 * 109.03679 * 176.88805 * 9 7 6 11 11 C 1.53096 * 109.16042 * 303.02009 * 10 9 7 12 12 O 1.42895 * 109.41774 * 57.60791 * 11 10 9 13 13 C 1.42909 * 114.10081 * 298.84247 * 12 11 10 14 14 C 1.39728 * 120.40559 * 0.25754 * 5 4 3 15 15 C 1.36228 * 120.42392 * 359.97438 * 14 5 4 16 16 C 1.40855 * 120.01457 * 0.04401 * 15 14 5 17 17 C 1.40961 * 120.20163 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00275 * 204.84063 * 17 16 15 19 19 C 1.39851 * 119.99971 * 24.84476 * 17 16 15 20 20 N 1.30956 * 119.99882 * 17.83567 * 19 17 16 21 21 Si 1.86801 * 119.99952 * 197.83195 * 19 17 16 22 22 H 1.48501 * 109.47151 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46961 * 120.00338 * 21 19 17 24 24 H 1.48493 * 109.47200 * 239.99820 * 21 19 17 25 25 H 1.09006 * 109.46833 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47527 * 299.99821 * 1 2 3 27 27 H 1.08994 * 109.47672 * 60.00197 * 1 2 3 28 28 H 1.08002 * 120.00819 * 0.02562 * 4 3 2 29 29 H 0.96992 * 120.00515 * 0.02562 * 6 5 4 30 30 H 1.09008 * 109.53749 * 296.74999 * 9 7 6 31 31 H 1.08996 * 109.54591 * 57.01550 * 9 7 6 32 32 H 1.08998 * 109.52281 * 62.91903 * 10 9 7 33 33 H 1.08999 * 109.52313 * 183.04935 * 10 9 7 34 34 H 1.08996 * 109.47968 * 177.59505 * 11 10 9 35 35 H 1.09000 * 109.47622 * 297.61190 * 11 10 9 36 36 H 1.09004 * 109.47895 * 301.17880 * 13 12 11 37 37 H 1.08995 * 109.48473 * 181.14196 * 13 12 11 38 38 H 1.07992 * 119.78817 * 180.02562 * 14 5 4 39 39 H 1.08006 * 119.99179 * 180.02562 * 15 14 5 40 40 H 0.96994 * 119.99633 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2973 2.3693 -0.0005 5 6 1.9342 3.6072 0.0048 6 7 1.1781 4.7726 0.0101 7 6 1.8438 6.0776 0.0152 8 1 2.7599 6.0215 -0.5730 9 6 0.9105 7.1307 -0.5900 10 6 1.5859 8.5031 -0.5082 11 6 1.9342 8.8055 0.9516 12 8 2.7788 7.7723 1.4623 13 6 2.1821 6.4737 1.4548 14 6 3.3293 3.6846 0.0054 15 6 4.0832 2.5500 0.0012 16 6 3.4573 1.2882 -0.0047 17 6 4.2336 0.1116 -0.0096 18 1 3.8227 -0.8048 -0.4068 19 6 5.5358 0.1309 0.4999 20 7 5.9174 1.1073 1.2847 21 14 6.7308 -1.2362 0.0611 22 1 6.0593 -2.2120 -0.8346 23 1 7.9104 -0.6589 -0.6322 24 1 7.1729 -1.9240 1.3006 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2185 2.3169 -0.0005 29 1 0.2095 4.7223 0.0103 30 1 0.7104 6.8843 -1.6329 31 1 -0.0260 7.1514 -0.0328 32 1 2.4972 8.4968 -1.1063 33 1 0.9067 9.2666 -0.8874 34 1 2.4535 9.7620 1.0107 35 1 1.0188 8.8519 1.5415 36 1 1.2700 6.4894 2.0513 37 1 2.8800 5.7504 1.8764 38 1 3.8130 4.6502 0.0100 39 1 5.1611 2.6180 0.0020 40 1 6.8205 1.1205 1.6383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169666473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:37 Heat of formation + Delta-G solvation = -81.781313 kcal Electronic energy + Delta-G solvation = -21608.118895 eV Core-core repulsion = 18386.954249 eV Total energy + Delta-G solvation = -3221.164645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81558 -40.14716 -38.26488 -36.58740 -34.95177 -33.60527 -31.62436 -30.66070 -29.50579 -28.00407 -26.23298 -25.89415 -24.06971 -22.87590 -21.97257 -21.00757 -19.24188 -18.42672 -17.72964 -17.08181 -16.85374 -16.68128 -16.25812 -16.20730 -15.84469 -15.65001 -15.52329 -14.54574 -14.41358 -14.11706 -13.82378 -13.68971 -13.55730 -13.23797 -13.09258 -12.76771 -12.59550 -12.37085 -12.16130 -12.10657 -11.94134 -11.78206 -11.54469 -11.35612 -11.28172 -11.02533 -10.65830 -10.05433 -8.94489 -8.51572 -8.19435 -5.90820 1.09152 1.11875 1.40784 1.54555 1.56493 2.31053 2.57149 2.84561 2.95496 3.15066 3.74022 3.77063 3.93029 4.01007 4.09339 4.22328 4.36478 4.48562 4.50217 4.51530 4.55421 4.67178 4.75527 4.78088 4.83626 4.92888 4.97791 5.02842 5.18629 5.22351 5.26484 5.37024 5.44788 5.60950 5.87682 6.08183 6.19149 6.30628 6.51187 6.78811 6.93266 7.08470 7.15748 7.37744 8.53765 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.004753 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.329341 B = 5889.204589 C = 7001.796639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.339 6.339 3 C 0.045 3.955 4 C -0.248 4.248 5 C 0.150 3.850 6 N -0.737 5.737 7 C 0.130 3.870 8 H 0.061 0.939 9 C -0.121 4.121 10 C -0.147 4.147 11 C 0.048 3.952 12 O -0.404 6.404 13 C 0.052 3.948 14 C -0.203 4.203 15 C -0.115 4.115 16 C 0.013 3.987 17 C -0.488 4.488 18 H 0.061 0.939 19 C 0.030 3.970 20 N -0.846 5.846 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.265 1.265 24 H -0.269 1.269 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.129 0.871 29 H 0.400 0.600 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 12.115 -2.334 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C 0.000 4.000 4 C -0.271 4.271 5 C 0.050 3.950 6 N -0.372 5.372 7 C 0.023 3.977 8 H 0.079 0.921 9 C -0.159 4.159 10 C -0.185 4.185 11 C -0.028 4.028 12 O -0.323 6.323 13 C -0.027 4.027 14 C -0.226 4.226 15 C -0.136 4.136 16 C 0.010 3.990 17 C -0.519 4.519 18 H 0.080 0.920 19 C -0.181 4.181 20 N -0.476 5.476 21 Si 0.796 3.204 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.194 1.194 25 H 0.128 0.872 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.235 0.765 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.143 12.175 -2.130 15.989 hybrid contribution 0.059 -0.757 -0.014 0.760 sum -10.084 11.418 -2.143 15.383 Atomic orbital electron populations 1.23078 0.78602 1.04115 1.01004 1.85942 1.21586 1.27975 1.89876 1.19158 0.91936 0.83607 1.05334 1.20310 0.98636 0.90634 1.17486 1.17127 0.90068 0.86125 1.01683 1.43862 1.06962 1.01166 1.85212 1.21323 0.96914 0.83587 0.95872 0.92134 1.21830 0.98390 0.93711 1.01965 1.22169 1.01829 0.96994 0.97514 1.22876 0.95295 0.90932 0.93667 1.87941 1.43148 1.16732 1.84437 1.23020 0.98363 0.84084 0.97183 1.20158 0.92389 0.97388 1.12620 1.20614 0.98935 0.91155 1.02849 1.17270 0.88827 0.94387 0.98478 1.19320 0.98471 0.96474 1.37683 0.92032 1.26534 0.99953 0.99185 0.92396 1.69934 1.19552 1.33300 1.24804 0.85288 0.77817 0.78398 0.78917 1.18762 1.19002 1.19421 0.87227 0.93102 0.92754 0.85286 0.76502 0.90519 0.89989 0.91662 0.87779 0.87260 0.91971 0.92247 0.91371 0.87925 0.87789 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.81 113.37 1.11 1.98 16 2 O -0.34 -16.06 9.78 -89.89 -0.88 -16.94 16 3 C 0.05 2.30 6.71 23.02 0.15 2.46 16 4 C -0.25 -10.67 8.86 22.46 0.20 -10.47 16 5 C 0.15 6.26 6.65 38.61 0.26 6.51 16 6 N -0.74 -22.97 5.22 -318.20 -1.66 -24.64 16 7 C 0.13 3.61 2.33 45.08 0.11 3.72 16 8 H 0.06 1.99 6.44 -2.38 -0.02 1.97 16 9 C -0.12 -2.32 5.50 30.71 0.17 -2.15 16 10 C -0.15 -2.39 6.14 30.69 0.19 -2.21 16 11 C 0.05 0.89 6.84 72.01 0.49 1.38 16 12 O -0.40 -11.31 10.77 -148.98 -1.60 -12.91 16 13 C 0.05 1.52 6.36 72.01 0.46 1.97 16 14 C -0.20 -9.64 8.78 22.16 0.19 -9.45 16 15 C -0.12 -6.34 8.62 22.44 0.19 -6.14 16 16 C 0.01 0.77 5.58 -21.18 -0.12 0.66 16 17 C -0.49 -28.72 8.70 23.33 0.20 -28.52 16 18 H 0.06 3.65 7.65 -2.91 -0.02 3.63 16 19 C 0.03 1.64 5.13 85.21 0.44 2.08 16 20 N -0.85 -47.73 10.97 21.82 0.24 -47.49 16 21 Si 0.97 42.06 29.60 68.60 2.03 44.09 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 26 H 0.05 1.52 7.66 -2.39 -0.02 1.50 16 27 H 0.05 1.58 7.66 -2.39 -0.02 1.56 16 28 H 0.13 4.59 6.29 -2.91 -0.02 4.57 16 29 H 0.40 10.32 8.60 -92.71 -0.80 9.52 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 2.42 7.68 -2.39 -0.02 2.40 16 38 H 0.10 4.55 6.02 -2.91 -0.02 4.54 16 39 H 0.10 6.05 6.17 -2.91 -0.02 6.03 16 40 H 0.28 14.40 8.30 -92.71 -0.77 13.63 16 Total: -1.00 -68.42 321.29 2.42 -65.99 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.25 Total: 30.07 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 4.05 Total: -38.17 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.42 Total: -72.12 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -2.48 Total: -29.85 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -68.42 2.42 -65.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169666473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.788 kcal (2) G-P(sol) polarization free energy of solvation -68.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds