Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35892 * 117.00113 * 2 1 4 4 C 1.38654 * 119.90111 * 0.02562 * 3 2 1 5 5 C 1.38160 * 119.92274 * 179.68517 * 4 3 2 6 6 C 1.38035 * 120.01427 * 0.22210 * 5 4 3 7 7 C 1.39157 * 120.33511 * 0.02562 * 6 5 4 8 8 C 1.38312 * 119.73196 * 0.06586 * 7 6 5 9 9 C 1.50767 * 121.43004 * 179.74862 * 8 7 6 10 10 C 1.53074 * 109.67790 * 17.78746 * 9 8 7 11 11 H 1.09006 * 109.69737 * 71.51706 * 10 9 8 12 12 N 1.46897 * 109.69847 * 192.11673 * 10 9 8 13 13 C 1.46904 * 111.00017 * 302.78668 * 12 10 9 14 14 C 1.46900 * 111.00041 * 178.83361 * 12 10 9 15 15 C 1.50705 * 109.47258 * 190.00121 * 14 12 10 16 16 H 1.08002 * 119.99887 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00136 * 180.02562 * 15 14 12 18 18 N 1.31504 * 120.00144 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99940 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46912 * 90.00232 * 19 17 15 21 21 H 1.48490 * 109.47259 * 210.00147 * 19 17 15 22 22 H 1.48504 * 109.47066 * 330.00552 * 19 17 15 23 23 C 1.53400 * 108.29245 * 311.81727 * 10 9 8 24 24 O 1.35853 * 118.47717 * 180.25403 * 7 6 5 25 25 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46900 * 300.00138 * 1 2 3 27 27 H 1.09001 * 109.47045 * 59.99421 * 1 2 3 28 28 H 1.08002 * 120.04161 * 359.96833 * 4 3 2 29 29 H 1.08000 * 119.99339 * 180.19449 * 5 4 3 30 30 H 1.08000 * 119.83596 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.43578 * 257.72647 * 9 8 7 32 32 H 1.08998 * 109.43441 * 137.85583 * 9 8 7 33 33 H 1.08999 * 109.47173 * 60.00250 * 13 12 10 34 34 H 1.09001 * 109.47023 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47355 * 299.99938 * 13 12 10 36 36 H 1.08990 * 109.47070 * 310.00266 * 14 12 10 37 37 H 1.09000 * 109.47049 * 70.00283 * 14 12 10 38 38 H 0.97000 * 120.00275 * 180.02562 * 18 17 15 39 39 H 1.09005 * 109.68369 * 304.99283 * 23 10 9 40 40 H 1.09001 * 109.68707 * 184.42757 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2888 2.3724 0.0005 5 6 1.9156 3.6036 0.0071 6 6 3.2940 3.6767 0.0085 7 6 4.0595 2.5145 0.0028 8 6 3.4337 1.2811 -0.0057 9 6 4.2254 -0.0020 -0.0178 10 6 5.6650 0.2764 0.4216 11 1 5.6876 0.4949 1.4893 12 7 6.5048 -0.8948 0.1372 13 6 5.9787 -2.0939 0.8031 14 6 7.9006 -0.6480 0.5230 15 6 8.7711 -1.7606 -0.0019 16 1 8.3314 -2.5703 -0.5653 17 6 10.1287 -1.7453 0.2381 18 7 10.8885 -2.7159 -0.2203 19 14 10.8892 -0.3452 1.2133 20 1 10.8891 -0.6908 2.6576 21 1 12.2850 -0.1251 0.7571 22 1 10.0977 0.8932 1.0006 23 6 6.1829 1.4873 -0.3651 24 8 5.4130 2.6304 0.0097 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2104 2.3148 0.0004 29 1 1.3270 4.5091 0.0107 30 1 3.7810 4.6406 0.0141 31 1 4.2276 -0.4173 -1.0256 32 1 3.7687 -0.7163 0.6672 33 1 4.9682 -2.2937 0.4467 34 1 6.6189 -2.9463 0.5755 35 1 5.9585 -1.9318 1.8807 36 1 8.2313 0.3015 0.1023 37 1 7.9758 -0.6097 1.6097 38 1 11.8435 -2.7054 -0.0512 39 1 6.0727 1.3050 -1.4341 40 1 7.2329 1.6578 -0.1274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173151690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = -37.122362 kcal Electronic energy + Delta-G solvation = -21824.032899 eV Core-core repulsion = 18604.804810 eV Total energy + Delta-G solvation = -3219.228088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90610 -39.22215 -37.20181 -36.25595 -33.23913 -32.16918 -30.20140 -29.40758 -28.08845 -27.44711 -25.76714 -24.45506 -22.82665 -22.10958 -20.74203 -19.31404 -18.40349 -17.27955 -16.68249 -16.31119 -15.94716 -15.81169 -15.07362 -14.93142 -14.52629 -14.21130 -13.98404 -13.29564 -13.28705 -13.11010 -13.00987 -12.79600 -12.38260 -12.30620 -11.86089 -11.70387 -11.49512 -11.13384 -11.08244 -10.97239 -10.71745 -10.56160 -10.28015 -9.92948 -9.82668 -9.29263 -8.60198 -8.31635 -8.09194 -7.50321 -6.08087 -4.05874 1.29344 1.39956 3.07717 3.26563 3.34559 3.35654 3.43300 3.70333 4.39196 4.53506 4.72327 4.75262 4.87491 4.94878 4.99405 5.11280 5.18784 5.25273 5.27591 5.35336 5.47829 5.52592 5.61070 5.85466 5.89667 6.04024 6.15607 6.20029 6.25833 6.31464 6.35597 6.37798 6.58814 6.64092 6.80337 6.91514 7.22800 7.50919 7.54475 7.82020 7.94737 8.60705 9.00334 9.53090 11.04858 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027940 B = 0.004485 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.920915 B = 6241.755854 C = 7068.148976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.160 3.840 4 C -0.246 4.246 5 C -0.054 4.054 6 C -0.188 4.188 7 C 0.171 3.829 8 C -0.185 4.185 9 C -0.059 4.059 10 C 0.047 3.953 11 H 0.044 0.956 12 N -0.520 5.520 13 C 0.035 3.965 14 C 0.156 3.844 15 C -0.510 4.510 16 H 0.082 0.918 17 C 0.070 3.930 18 N -0.898 5.898 19 Si 0.873 3.127 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.063 3.937 24 O -0.312 6.312 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.013 0.987 36 H 0.031 0.969 37 H -0.014 1.014 38 H 0.264 0.736 39 H 0.076 0.924 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.503 10.232 1.113 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.114 3.886 4 C -0.265 4.265 5 C -0.072 4.072 6 C -0.206 4.206 7 C 0.125 3.875 8 C -0.187 4.187 9 C -0.097 4.097 10 C -0.063 4.063 11 H 0.062 0.938 12 N -0.245 5.245 13 C -0.114 4.114 14 C 0.030 3.970 15 C -0.548 4.548 16 H 0.100 0.900 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.192 1.192 23 C -0.011 4.011 24 O -0.224 6.224 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.031 0.969 36 H 0.049 0.951 37 H 0.004 0.996 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.105 10.047 0.644 22.485 hybrid contribution 0.279 0.728 1.407 1.608 sum -19.827 10.775 2.051 22.658 Atomic orbital electron populations 1.23050 0.78517 1.03862 1.01244 1.86088 1.21163 1.26855 1.88300 1.18583 0.90949 0.84217 0.94848 1.21027 0.99762 0.92233 1.13495 1.20608 0.93448 0.97016 0.96140 1.20490 0.93174 0.96940 1.10044 1.18501 0.83219 0.92200 0.93585 1.19190 0.91461 0.95280 1.12756 1.20362 0.92620 0.93355 1.03327 1.22181 0.93609 0.92837 0.97636 0.93778 1.62010 1.03049 1.01117 1.58352 1.22293 0.99566 0.94433 0.95065 1.20321 0.84692 0.98355 0.93650 1.20994 0.91396 1.07729 1.34704 0.89986 1.24884 0.97069 0.95720 0.95525 1.69881 1.05541 1.32296 1.46012 0.86895 0.78938 0.83431 0.80685 1.20305 1.21042 1.19169 1.23264 0.95095 0.83134 0.99644 1.86045 1.14105 1.39136 1.83152 0.88274 0.92735 0.92674 0.85561 0.85388 0.85220 0.89531 0.90095 0.92820 0.89820 0.96878 0.95081 0.99615 0.92594 0.90549 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.89 9.63 -19.40 -0.19 -4.07 16 3 C 0.16 2.15 6.65 -39.16 -0.26 1.89 16 4 C -0.25 -2.74 9.03 -39.46 -0.36 -3.10 16 5 C -0.05 -0.58 10.03 -39.68 -0.40 -0.98 16 6 C -0.19 -2.40 9.93 -39.31 -0.39 -2.79 16 7 C 0.17 2.62 6.47 -39.21 -0.25 2.37 16 8 C -0.18 -2.82 5.76 -104.30 -0.60 -3.42 16 9 C -0.06 -0.95 4.03 -27.81 -0.11 -1.06 16 10 C 0.05 0.84 2.16 -67.47 -0.15 0.70 16 11 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 12 N -0.52 -10.79 4.62 -236.03 -1.09 -11.88 16 13 C 0.03 0.66 8.98 60.07 0.54 1.20 16 14 C 0.16 3.72 3.62 -4.97 -0.02 3.70 16 15 C -0.51 -14.27 9.01 -34.44 -0.31 -14.58 16 16 H 0.08 2.49 7.37 -52.49 -0.39 2.11 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 19 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 23 C 0.06 1.09 6.22 37.36 0.23 1.32 16 24 O -0.31 -5.17 10.27 -19.28 -0.20 -5.37 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 27 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 28 H 0.13 1.06 6.28 -52.49 -0.33 0.73 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.08 1.27 6.79 -51.93 -0.35 0.92 16 33 H 0.05 0.89 6.55 -51.93 -0.34 0.55 16 34 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 35 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.03 0.74 4.83 -51.93 -0.25 0.49 16 37 H -0.01 -0.33 7.55 -51.93 -0.39 -0.73 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.12 2.06 6.04 -51.93 -0.31 1.75 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -31.10 316.49 -7.42 -38.53 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.64 Total: -0.48 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.18 Total: -11.64 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.32 Total: -38.37 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.38 Total: -9.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.10 -7.42 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173151690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.403 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds