Wall clock time and date at job start Mon Mar 30 2020 01:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35895 * 116.99833 * 2 1 4 4 C 1.38652 * 119.90306 * 0.02562 * 3 2 1 5 5 C 1.38152 * 119.92450 * 180.02562 * 4 3 2 6 6 C 1.38045 * 120.01862 * 0.04000 * 5 4 3 7 7 C 1.39153 * 120.32538 * 0.02562 * 6 5 4 8 8 C 1.38317 * 119.73513 * 359.85722 * 7 6 5 9 9 C 1.50763 * 121.42897 * 180.25273 * 8 7 6 10 10 C 1.53077 * 109.65152 * 342.22828 * 9 8 7 11 11 H 1.09000 * 109.69491 * 288.43145 * 10 9 8 12 12 N 1.46900 * 109.69595 * 167.83463 * 10 9 8 13 13 C 1.46905 * 111.00034 * 298.95405 * 12 10 9 14 14 C 1.46898 * 110.99784 * 175.00245 * 12 10 9 15 15 C 1.50700 * 109.47133 * 190.00186 * 14 12 10 16 16 H 1.07995 * 119.99729 * 359.97438 * 15 14 12 17 17 C 1.37880 * 120.00276 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99717 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00262 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47256 * 59.99593 * 19 17 15 21 21 H 1.48497 * 109.47221 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47173 * 299.99742 * 19 17 15 23 23 C 1.53321 * 108.34941 * 48.16172 * 10 9 8 24 24 O 1.35851 * 118.46939 * 179.58587 * 7 6 5 25 25 H 1.09006 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47261 * 299.99692 * 1 2 3 27 27 H 1.08998 * 109.47254 * 59.99831 * 1 2 3 28 28 H 1.08002 * 120.03703 * 0.02562 * 4 3 2 29 29 H 1.08008 * 119.99456 * 180.02562 * 5 4 3 30 30 H 1.07992 * 119.83765 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.43689 * 102.27561 * 9 8 7 32 32 H 1.08999 * 109.43343 * 222.19053 * 9 8 7 33 33 H 1.08999 * 109.46908 * 60.00367 * 13 12 10 34 34 H 1.08999 * 109.47034 * 180.02562 * 13 12 10 35 35 H 1.08995 * 109.47039 * 300.00228 * 13 12 10 36 36 H 1.08998 * 109.47206 * 309.99526 * 14 12 10 37 37 H 1.08999 * 109.47296 * 69.99979 * 14 12 10 38 38 H 0.96994 * 119.99985 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.68777 * 175.57202 * 23 10 9 40 40 H 1.08998 * 109.70434 * 54.99372 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2888 2.3724 0.0005 5 6 1.9155 3.6036 0.0000 6 6 3.2940 3.6768 -0.0019 7 6 4.0593 2.5147 -0.0038 8 6 3.4336 1.2811 -0.0008 9 6 4.2252 -0.0019 0.0029 10 6 5.6640 0.2796 -0.4372 11 1 5.6848 0.5032 -1.5039 12 7 6.5050 -0.8924 -0.1598 13 6 6.5277 -1.1957 1.2775 14 6 7.8656 -0.6987 -0.6785 15 6 8.6236 -1.9988 -0.5984 16 1 8.1427 -2.8805 -0.2015 17 6 9.9312 -2.0622 -1.0309 18 7 10.5169 -0.9882 -1.5138 19 14 10.8710 -3.6735 -0.9310 20 1 10.1744 -4.7039 -1.7423 21 1 12.2464 -3.4777 -1.4555 22 1 10.9390 -4.1199 0.4837 23 6 6.1835 1.4859 0.3539 24 8 5.4128 2.6307 -0.0143 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2103 2.3147 0.0014 29 1 1.3267 4.5091 0.0008 30 1 3.7808 4.6408 -0.0019 31 1 4.2292 -0.4227 1.0084 32 1 3.7678 -0.7123 -0.6858 33 1 5.5144 -1.4035 1.6210 34 1 7.1578 -2.0673 1.4549 35 1 6.9282 -0.3412 1.8228 36 1 7.8154 -0.3709 -1.7168 37 1 8.3773 0.0574 -0.0830 38 1 11.4367 -1.0329 -1.8185 39 1 7.2331 1.6574 0.1148 40 1 6.0756 1.2988 1.4223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173151691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:13 Heat of formation + Delta-G solvation = -40.191393 kcal Electronic energy + Delta-G solvation = -21792.084099 eV Core-core repulsion = 18572.722928 eV Total energy + Delta-G solvation = -3219.361171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87955 -39.20886 -37.19243 -36.13734 -33.21047 -32.15197 -29.94879 -29.22763 -27.38295 -27.18676 -25.57270 -25.20483 -22.94766 -22.07166 -20.96945 -18.92830 -18.34100 -17.16404 -16.28761 -16.24577 -15.94194 -15.74267 -14.98216 -14.86706 -14.70470 -14.11930 -13.80325 -13.48227 -13.37123 -12.97442 -12.76977 -12.55636 -12.30678 -11.97891 -11.85207 -11.67390 -11.23478 -11.00018 -10.95269 -10.83458 -10.63179 -10.49549 -10.37538 -10.23991 -9.80959 -9.26657 -8.45616 -8.25583 -8.05675 -7.26125 -6.04734 -4.06427 1.34751 1.45341 3.13319 3.32964 3.37213 3.40019 3.50098 3.75766 4.39688 4.65211 4.78923 4.91005 4.98991 5.02451 5.03835 5.14880 5.23826 5.30238 5.31733 5.39887 5.52252 5.60594 5.63948 5.77361 5.94110 6.10612 6.21382 6.27647 6.30513 6.37552 6.44191 6.49239 6.65965 6.72651 7.20776 7.25092 7.29510 7.58627 7.76012 8.02242 8.12599 8.48419 9.00395 9.57826 11.06081 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029577 B = 0.004089 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.443700 B = 6846.168915 C = 7537.076194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.160 3.840 4 C -0.247 4.247 5 C -0.054 4.054 6 C -0.188 4.188 7 C 0.171 3.829 8 C -0.185 4.185 9 C -0.061 4.061 10 C 0.053 3.947 11 H 0.089 0.911 12 N -0.525 5.525 13 C 0.027 3.973 14 C 0.190 3.810 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.026 3.974 24 O -0.310 6.310 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.014 0.986 36 H 0.032 0.968 37 H -0.006 1.006 38 H 0.262 0.738 39 H 0.115 0.885 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.870 6.899 4.558 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.114 3.886 4 C -0.266 4.266 5 C -0.073 4.073 6 C -0.207 4.207 7 C 0.125 3.875 8 C -0.187 4.187 9 C -0.098 4.098 10 C -0.057 4.057 11 H 0.107 0.893 12 N -0.249 5.249 13 C -0.122 4.122 14 C 0.065 3.935 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.050 4.050 24 O -0.222 6.222 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.050 0.950 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.676 6.512 4.182 20.216 hybrid contribution 0.695 -0.138 0.445 0.837 sum -17.981 6.375 4.626 19.630 Atomic orbital electron populations 1.23044 0.78603 1.03823 1.01200 1.86098 1.21084 1.26837 1.88290 1.18591 0.90985 0.84188 0.94840 1.21018 0.99727 0.92250 1.13593 1.20598 0.93434 0.96995 0.96233 1.20487 0.93174 0.96948 1.10115 1.18509 0.83235 0.92222 0.93538 1.19217 0.91465 0.95391 1.12621 1.20397 0.93184 0.93308 1.02958 1.22335 0.93404 0.89687 1.00251 0.89261 1.62281 1.15333 1.32884 1.14411 1.22371 1.00250 1.00909 0.88625 1.19801 0.81566 0.96953 0.95175 1.21099 0.96302 0.95833 1.41590 0.91813 1.24983 0.97596 0.96643 0.95306 1.69943 1.13195 1.28212 1.42382 0.86543 0.78713 0.83673 0.78381 1.20138 1.21353 1.20273 1.23959 0.96043 0.85419 0.99614 1.86020 1.14004 1.39130 1.83092 0.88305 0.92771 0.92712 0.85608 0.85440 0.85280 0.90318 0.89404 0.93058 0.90306 0.96712 0.95020 0.98794 0.92803 0.86739 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.01 9.64 -19.41 -0.19 -4.20 16 3 C 0.16 2.21 6.65 -39.17 -0.26 1.95 16 4 C -0.25 -2.85 9.03 -39.46 -0.36 -3.21 16 5 C -0.05 -0.61 10.03 -39.68 -0.40 -1.01 16 6 C -0.19 -2.51 9.93 -39.31 -0.39 -2.90 16 7 C 0.17 2.72 6.47 -39.21 -0.25 2.47 16 8 C -0.18 -2.91 5.76 -104.30 -0.60 -3.51 16 9 C -0.06 -1.01 4.86 -27.81 -0.14 -1.15 16 10 C 0.05 0.99 2.45 -67.51 -0.17 0.83 16 11 H 0.09 1.77 8.03 -51.93 -0.42 1.35 16 12 N -0.52 -11.19 4.75 -236.08 -1.12 -12.31 16 13 C 0.03 0.51 8.65 60.07 0.52 1.03 16 14 C 0.19 4.84 4.21 -4.98 -0.02 4.82 16 15 C -0.51 -14.14 8.46 -34.44 -0.29 -14.43 16 16 H 0.06 1.75 7.12 -52.49 -0.37 1.37 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.03 0.46 5.53 37.32 0.21 0.67 16 24 O -0.31 -5.38 10.27 -19.27 -0.20 -5.57 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 27 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 28 H 0.13 1.11 6.28 -52.49 -0.33 0.78 16 29 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.08 1.27 5.90 -51.93 -0.31 0.97 16 32 H 0.09 1.49 7.84 -51.93 -0.41 1.08 16 33 H 0.05 0.85 6.11 -51.93 -0.32 0.53 16 34 H 0.08 1.60 6.76 -51.93 -0.35 1.25 16 35 H 0.01 0.27 6.39 -51.93 -0.33 -0.06 16 36 H 0.03 0.87 8.00 -51.93 -0.42 0.46 16 37 H -0.01 -0.15 6.89 -51.93 -0.36 -0.51 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.11 2.16 6.64 -51.93 -0.34 1.82 16 40 H 0.06 1.08 6.68 -51.93 -0.35 0.73 16 LS Contribution 316.59 15.07 4.77 4.77 Total: -1.00 -30.53 316.59 -7.77 -38.29 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.50 Total: -0.03 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.25 Total: -11.73 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.38 Total: -38.03 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.39 Total: -9.78 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.53 -7.77 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173151691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.897 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds