Wall clock time and date at job start Mon Mar 30 2020 01:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35891 * 117.00218 * 2 1 4 4 C 1.38660 * 119.90158 * 0.02562 * 3 2 1 5 5 C 1.38154 * 119.92718 * 180.02562 * 4 3 2 6 6 C 1.38047 * 120.01502 * 0.03689 * 5 4 3 7 7 C 1.39158 * 120.32800 * 0.04404 * 6 5 4 8 8 C 1.38314 * 119.73404 * 359.82483 * 7 6 5 9 9 C 1.50767 * 121.42935 * 180.27556 * 8 7 6 10 10 C 1.53066 * 109.68612 * 342.18299 * 9 8 7 11 11 H 1.09004 * 109.70237 * 288.40251 * 10 9 8 12 12 N 1.46903 * 109.69612 * 167.84910 * 10 9 8 13 13 C 1.46896 * 111.00106 * 154.99792 * 12 10 9 14 14 C 1.52996 * 109.47256 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.53403 * 108.30356 * 48.15139 * 10 9 8 24 24 O 1.35854 * 118.47399 * 179.54438 * 7 6 5 25 25 H 1.08996 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47259 * 300.00524 * 1 2 3 27 27 H 1.08997 * 109.47265 * 59.99998 * 1 2 3 28 28 H 1.08009 * 120.03552 * 359.96129 * 4 3 2 29 29 H 1.07998 * 119.99640 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.83674 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.43286 * 222.11972 * 9 8 7 32 32 H 1.08991 * 109.43281 * 102.25407 * 9 8 7 33 33 H 1.00897 * 111.00198 * 278.95493 * 12 10 9 34 34 H 1.09004 * 109.46774 * 60.00282 * 13 12 10 35 35 H 1.09000 * 109.47723 * 300.00671 * 13 12 10 36 36 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 37 37 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.68872 * 55.02862 * 23 10 9 40 40 H 1.09008 * 109.68454 * 175.59062 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2888 2.3724 0.0005 5 6 1.9155 3.6036 0.0000 6 6 3.2940 3.6768 -0.0018 7 6 4.0594 2.5146 -0.0041 8 6 3.4336 1.2811 -0.0008 9 6 4.2252 -0.0020 0.0031 10 6 5.6638 0.2783 -0.4381 11 1 5.6843 0.5006 -1.5051 12 7 6.5042 -0.8942 -0.1606 13 6 7.6712 -0.9284 -1.0521 14 6 8.5200 -2.1609 -0.7342 15 6 9.7176 -2.1956 -1.6483 16 1 9.8594 -1.4162 -2.3824 17 6 10.6357 -3.2190 -1.5434 18 7 10.4632 -4.1679 -0.6492 19 14 12.1241 -3.2578 -2.6713 20 1 12.9322 -2.0288 -2.4671 21 1 12.9505 -4.4516 -2.3594 22 1 11.6728 -3.3243 -4.0845 23 6 6.1837 1.4857 0.3525 24 8 5.4129 2.6304 -0.0153 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.2102 2.3147 0.0003 29 1 1.3269 4.5091 0.0008 30 1 3.7809 4.6408 -0.0018 31 1 3.7670 -0.7130 -0.6844 32 1 4.2296 -0.4223 1.0087 33 1 6.7879 -0.9148 0.8074 34 1 8.2677 -0.0281 -0.9044 35 1 7.3359 -0.9760 -2.0882 36 1 7.9233 -3.0611 -0.8822 37 1 8.8555 -2.1137 0.3018 38 1 11.1089 -4.8881 -0.5756 39 1 6.0764 1.2988 1.4210 40 1 7.2332 1.6573 0.1129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173156337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:24 Heat of formation + Delta-G solvation = -58.740467 kcal Electronic energy + Delta-G solvation = -21033.507549 eV Core-core repulsion = 17813.342030 eV Total energy + Delta-G solvation = -3220.165519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99714 -39.29952 -36.95868 -36.07343 -33.58681 -32.40843 -30.47764 -29.72814 -27.91081 -27.34375 -25.69491 -24.23929 -22.68440 -22.12576 -20.77435 -19.82025 -18.55346 -17.16571 -16.46234 -16.30693 -16.05425 -15.83501 -15.39208 -15.04430 -14.54288 -14.37705 -13.88385 -13.68630 -13.37843 -13.36737 -12.99149 -12.54798 -12.45357 -12.11041 -11.93141 -11.75443 -11.22925 -11.09786 -11.02417 -10.94631 -10.81752 -10.60535 -10.50158 -10.02017 -9.40221 -9.17703 -8.44133 -8.36029 -8.20701 -7.88390 -6.00569 -4.03417 1.20063 1.30857 2.99884 3.28567 3.33515 3.37880 3.40319 3.60340 4.36246 4.50038 4.65124 4.73172 4.80190 4.90478 4.91517 4.92885 4.99880 5.22838 5.26722 5.28585 5.35437 5.42226 5.49229 5.62486 5.64754 6.08997 6.11266 6.14122 6.25778 6.29452 6.30064 6.37936 6.49420 6.92674 7.13386 7.32414 7.44932 7.68268 7.76312 7.88778 8.05310 8.41268 9.03495 9.60470 11.10794 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030740 B = 0.003201 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.635984 B = 8744.649616 C = 9387.529558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.161 3.839 4 C -0.245 4.245 5 C -0.053 4.053 6 C -0.187 4.187 7 C 0.168 3.832 8 C -0.186 4.186 9 C -0.055 4.055 10 C 0.054 3.946 11 H 0.088 0.912 12 N -0.676 5.676 13 C 0.064 3.936 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.030 3.970 24 O -0.310 6.310 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.339 0.661 34 H 0.018 0.982 35 H 0.061 0.939 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.084 13.802 3.413 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.115 3.885 4 C -0.264 4.264 5 C -0.072 4.072 6 C -0.206 4.206 7 C 0.122 3.878 8 C -0.188 4.188 9 C -0.093 4.093 10 C -0.057 4.057 11 H 0.106 0.894 12 N -0.307 5.307 13 C -0.064 4.064 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.047 4.047 24 O -0.223 6.223 25 H 0.118 0.882 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.157 0.843 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.161 13.167 3.033 24.270 hybrid contribution 1.117 0.572 -0.150 1.264 sum -19.044 13.739 2.883 23.659 Atomic orbital electron populations 1.23064 0.78422 1.03984 1.01246 1.86102 1.21232 1.26720 1.88177 1.18599 0.90988 0.84283 0.94618 1.21063 0.99878 0.92233 1.13183 1.20623 0.93430 0.97076 0.96023 1.20488 0.93196 0.96924 1.09992 1.18463 0.82904 0.92295 0.94117 1.19215 0.91565 0.95279 1.12722 1.20268 0.92774 0.93204 1.03042 1.22229 0.93949 0.89169 1.00357 0.89375 1.60619 1.22829 1.38044 1.09225 1.22261 0.88875 0.99691 0.95589 1.19068 0.93354 0.92027 0.96761 1.21132 1.07330 1.09101 1.18672 0.92769 1.25001 0.98176 0.95564 0.95579 1.69963 1.36353 1.12470 1.34430 0.86640 0.82665 0.77381 0.81196 1.20274 1.21263 1.20196 1.23966 0.95691 0.85467 0.99539 1.86011 1.14257 1.38698 1.83298 0.88173 0.92697 0.92659 0.85471 0.85316 0.85231 0.89304 0.90423 0.84286 0.96397 0.92073 0.95538 0.96744 0.92901 0.91573 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.66 9.64 -19.40 -0.19 -3.85 16 3 C 0.16 2.01 6.65 -39.16 -0.26 1.75 16 4 C -0.24 -2.51 9.03 -39.46 -0.36 -2.87 16 5 C -0.05 -0.52 10.03 -39.68 -0.40 -0.92 16 6 C -0.19 -2.17 9.93 -39.31 -0.39 -2.56 16 7 C 0.17 2.31 6.47 -39.21 -0.25 2.06 16 8 C -0.19 -2.57 5.76 -104.30 -0.60 -3.17 16 9 C -0.06 -0.79 5.09 -27.82 -0.14 -0.93 16 10 C 0.05 0.82 2.70 -67.47 -0.18 0.63 16 11 H 0.09 1.42 7.80 -51.93 -0.41 1.02 16 12 N -0.68 -11.78 6.27 -106.47 -0.67 -12.45 16 13 C 0.06 1.32 5.43 -3.83 -0.02 1.29 16 14 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 15 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.03 0.41 6.31 37.37 0.24 0.65 16 24 O -0.31 -4.48 10.27 -19.28 -0.20 -4.68 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 27 H 0.05 0.34 7.65 -51.93 -0.40 -0.05 16 28 H 0.13 0.98 6.28 -52.48 -0.33 0.65 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.09 1.34 7.84 -51.93 -0.41 0.93 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.34 5.57 8.47 -39.29 -0.33 5.24 16 34 H 0.02 0.36 7.49 -51.93 -0.39 -0.03 16 35 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 1.47 7.49 -51.92 -0.39 1.08 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -31.40 328.95 -8.28 -39.68 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.97 Total: 1.76 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -1.93 Total: -15.93 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.07 Total: -38.62 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.38 Total: -8.53 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.40 -8.28 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173156337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.056 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds