Wall clock time and date at job start Mon Mar 30 2020 01:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35891 * 117.00218 * 2 1 4 4 C 1.38660 * 119.90158 * 0.02562 * 3 2 1 5 5 C 1.38154 * 119.92718 * 180.02562 * 4 3 2 6 6 C 1.38047 * 120.01502 * 0.03689 * 5 4 3 7 7 C 1.39158 * 120.32800 * 0.04404 * 6 5 4 8 8 C 1.38314 * 119.73404 * 359.82483 * 7 6 5 9 9 C 1.50767 * 121.42935 * 180.27556 * 8 7 6 10 10 C 1.53066 * 109.68612 * 342.18299 * 9 8 7 11 11 H 1.09004 * 109.70237 * 288.40251 * 10 9 8 12 12 N 1.46903 * 109.69612 * 167.84910 * 10 9 8 13 13 C 1.46896 * 111.00106 * 154.99792 * 12 10 9 14 14 C 1.52996 * 109.47256 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.53403 * 108.30356 * 48.15139 * 10 9 8 24 24 O 1.35854 * 118.47399 * 179.54438 * 7 6 5 25 25 H 1.08996 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47259 * 300.00524 * 1 2 3 27 27 H 1.08997 * 109.47265 * 59.99998 * 1 2 3 28 28 H 1.08009 * 120.03552 * 359.96129 * 4 3 2 29 29 H 1.07998 * 119.99640 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.83674 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.43286 * 222.11972 * 9 8 7 32 32 H 1.08991 * 109.43281 * 102.25407 * 9 8 7 33 33 H 1.00897 * 111.00198 * 278.95493 * 12 10 9 34 34 H 1.09004 * 109.46774 * 60.00282 * 13 12 10 35 35 H 1.09000 * 109.47723 * 300.00671 * 13 12 10 36 36 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 37 37 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.68872 * 55.02862 * 23 10 9 40 40 H 1.09008 * 109.68454 * 175.59062 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2888 2.3724 0.0005 5 6 1.9155 3.6036 0.0000 6 6 3.2940 3.6768 -0.0018 7 6 4.0594 2.5146 -0.0041 8 6 3.4336 1.2811 -0.0008 9 6 4.2252 -0.0020 0.0031 10 6 5.6638 0.2783 -0.4381 11 1 5.6843 0.5006 -1.5051 12 7 6.5042 -0.8942 -0.1606 13 6 7.6712 -0.9284 -1.0521 14 6 8.5200 -2.1609 -0.7342 15 6 9.7176 -2.1956 -1.6483 16 1 9.8594 -1.4162 -2.3824 17 6 10.6357 -3.2190 -1.5434 18 7 10.4632 -4.1679 -0.6492 19 14 12.1241 -3.2578 -2.6713 20 1 12.9322 -2.0288 -2.4671 21 1 12.9505 -4.4516 -2.3594 22 1 11.6728 -3.3243 -4.0845 23 6 6.1837 1.4857 0.3525 24 8 5.4129 2.6304 -0.0153 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.2102 2.3147 0.0003 29 1 1.3269 4.5091 0.0008 30 1 3.7809 4.6408 -0.0018 31 1 3.7670 -0.7130 -0.6844 32 1 4.2296 -0.4223 1.0087 33 1 6.7879 -0.9148 0.8074 34 1 8.2677 -0.0281 -0.9044 35 1 7.3359 -0.9760 -2.0882 36 1 7.9233 -3.0611 -0.8822 37 1 8.8555 -2.1137 0.3018 38 1 11.1089 -4.8881 -0.5756 39 1 6.0764 1.2988 1.4210 40 1 7.2332 1.6573 0.1129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173156337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:23 Heat of formation + Delta-G solvation = -79.403869 kcal Electronic energy + Delta-G solvation = -21034.403581 eV Core-core repulsion = 17813.342030 eV Total energy + Delta-G solvation = -3221.061552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96082 -40.21136 -38.10103 -37.22521 -35.40044 -33.90239 -31.87964 -30.71708 -29.33515 -28.11692 -26.74681 -26.08117 -23.85412 -23.03322 -22.56725 -21.00589 -19.42543 -18.57795 -18.04205 -17.35962 -17.10549 -16.67487 -16.60218 -16.36116 -15.93691 -15.77469 -15.19244 -14.83118 -14.75919 -14.36654 -14.23414 -13.87282 -13.73395 -13.25424 -13.16832 -12.91790 -12.79856 -12.57349 -12.45968 -12.24399 -12.06604 -11.86084 -11.81998 -11.53691 -11.40251 -11.20771 -10.56240 -9.48540 -9.27571 -9.04664 -8.20583 -6.32058 0.31677 0.42613 1.40604 1.43730 1.51634 2.13245 2.38774 2.42220 2.71476 3.12984 3.15528 3.57684 3.68298 3.84526 3.96878 4.05873 4.19658 4.28490 4.38801 4.42606 4.44385 4.48775 4.50695 4.54718 4.66969 4.68301 4.76867 4.92123 5.03725 5.12862 5.26073 5.30060 5.43155 5.45909 5.64520 5.65659 5.76036 6.04409 6.20238 6.30969 6.44201 6.48017 6.84813 7.37172 8.91358 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030740 B = 0.003201 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.635984 B = 8744.649616 C = 9387.529558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.149 3.851 4 C -0.239 4.239 5 C -0.044 4.044 6 C -0.195 4.195 7 C 0.144 3.856 8 C -0.210 4.210 9 C -0.045 4.045 10 C 0.060 3.940 11 H 0.076 0.924 12 N -0.680 5.680 13 C 0.083 3.917 14 C 0.032 3.968 15 C -0.547 4.547 16 H 0.061 0.939 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.268 1.268 23 C 0.036 3.964 24 O -0.321 6.321 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.157 0.843 29 H 0.166 0.834 30 H 0.143 0.857 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.345 0.655 34 H 0.027 0.973 35 H 0.056 0.944 36 H -0.006 1.006 37 H -0.004 1.004 38 H 0.264 0.736 39 H 0.077 0.923 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.279 15.634 2.988 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.103 3.897 4 C -0.258 4.258 5 C -0.062 4.062 6 C -0.214 4.214 7 C 0.099 3.901 8 C -0.212 4.212 9 C -0.083 4.083 10 C -0.050 4.050 11 H 0.094 0.906 12 N -0.312 5.312 13 C -0.046 4.046 14 C -0.005 4.005 15 C -0.585 4.585 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.040 4.040 24 O -0.233 6.233 25 H 0.132 0.868 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.175 0.825 29 H 0.184 0.816 30 H 0.160 0.840 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.013 0.987 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -21.384 15.016 2.610 26.259 hybrid contribution 1.326 0.007 0.013 1.326 sum -20.058 15.023 2.623 25.197 Atomic orbital electron populations 1.23370 0.76180 1.05472 1.02566 1.86073 1.23651 1.26851 1.88127 1.18786 0.90769 0.85367 0.94747 1.21441 1.01314 0.91516 1.11531 1.21080 0.92892 0.98365 0.93824 1.20795 0.94098 0.96718 1.09790 1.18769 0.82609 0.93150 0.95595 1.19241 0.92514 0.94768 1.14666 1.20083 0.92104 0.93737 1.02350 1.22140 0.94055 0.88882 0.99966 0.90590 1.60491 1.21670 1.39921 1.09113 1.21861 0.89332 0.97517 0.95850 1.18913 0.93260 0.93014 0.95362 1.21586 1.08261 1.09464 1.19184 0.92115 1.25966 1.01516 0.95041 0.97153 1.70100 1.37649 1.13192 1.36159 0.85485 0.78573 0.77799 0.79091 1.19054 1.20797 1.19261 1.23842 0.95649 0.84754 0.99789 1.85985 1.15004 1.38549 1.83806 0.86827 0.91182 0.91365 0.82541 0.81617 0.83958 0.90763 0.90703 0.83617 0.95431 0.92563 0.98737 0.98605 0.92710 0.90526 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.62 9.64 -92.32 -0.89 -8.51 16 3 C 0.15 3.56 6.65 22.54 0.15 3.71 16 4 C -0.24 -4.23 9.03 22.35 0.20 -4.03 16 5 C -0.04 -0.72 10.03 22.20 0.22 -0.49 16 6 C -0.20 -4.16 9.93 22.45 0.22 -3.94 16 7 C 0.14 3.88 6.47 22.51 0.15 4.02 16 8 C -0.21 -5.77 5.76 -19.66 -0.11 -5.88 16 9 C -0.05 -1.32 5.09 29.89 0.15 -1.17 16 10 C 0.06 1.86 2.70 45.07 0.12 1.98 16 11 H 0.08 2.52 7.80 -2.38 -0.02 2.50 16 12 N -0.68 -24.32 6.27 -490.75 -3.08 -27.40 16 13 C 0.08 3.50 5.43 86.30 0.47 3.96 16 14 C 0.03 1.71 5.23 29.85 0.16 1.87 16 15 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 0.08 5.46 84.66 0.46 0.54 16 18 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 19 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 C 0.04 1.00 6.31 72.12 0.45 1.45 16 24 O -0.32 -9.18 10.27 -91.90 -0.94 -10.13 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 0.66 7.65 -2.38 -0.02 0.64 16 27 H 0.07 0.67 7.65 -2.39 -0.02 0.65 16 28 H 0.16 1.77 6.28 -2.91 -0.02 1.75 16 29 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 30 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.07 2.34 7.84 -2.38 -0.02 2.32 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.34 11.62 8.47 -89.70 -0.76 10.86 16 34 H 0.03 1.10 7.49 -2.38 -0.02 1.09 16 35 H 0.06 2.41 8.06 -2.39 -0.02 2.39 16 36 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 37 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.11 2.95 7.49 -2.38 -0.02 2.93 16 Total: -1.00 -68.63 328.95 1.67 -66.96 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.28 Total: 17.19 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 3.99 Total: -27.79 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -2.79 Total: -84.26 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -1.83 Total: -18.63 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.63 1.67 -66.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173156337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.439 kcal (2) G-P(sol) polarization free energy of solvation -68.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds