Wall clock time and date at job start Mon Mar 30 2020 01:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37098 * 120.00116 * 2 1 4 4 H 1.07999 * 120.00258 * 142.82386 * 3 2 1 5 5 C 1.38954 * 119.99831 * 322.82292 * 3 2 1 6 6 N 1.31407 * 119.99906 * 158.40747 * 5 3 2 7 7 Si 1.86803 * 119.99822 * 338.40985 * 5 3 2 8 8 H 1.48495 * 109.47274 * 95.72374 * 7 5 3 9 9 H 1.48506 * 109.46881 * 215.72207 * 7 5 3 10 10 H 1.48497 * 109.46941 * 335.71846 * 7 5 3 11 11 C 1.34772 * 120.00103 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00015 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00114 * 0.02562 * 11 2 1 14 14 C 1.52999 * 109.47241 * 179.97438 * 13 11 2 15 15 C 1.53008 * 109.46943 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47263 * 180.02562 * 16 15 14 18 18 C 1.35895 * 117.00389 * 179.97438 * 17 16 15 19 19 C 1.38727 * 120.06070 * 179.97438 * 18 17 16 20 20 C 1.38141 * 119.94646 * 179.97438 * 19 18 17 21 21 C 1.38257 * 120.05657 * 0.02601 * 20 19 18 22 22 C 1.38266 * 120.11421 * 359.95513 * 21 20 19 23 23 C 1.38139 * 120.05248 * 0.04462 * 22 21 20 24 24 H 1.09003 * 109.47630 * 265.14010 * 1 2 3 25 25 H 1.09000 * 109.46958 * 25.14183 * 1 2 3 26 26 H 1.08993 * 109.46966 * 145.13930 * 1 2 3 27 27 H 0.97004 * 119.99673 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46873 * 59.99718 * 13 11 2 29 29 H 1.09000 * 109.47127 * 300.00345 * 13 11 2 30 30 H 1.08995 * 109.46940 * 60.00385 * 14 13 11 31 31 H 1.08994 * 109.47100 * 300.00004 * 14 13 11 32 32 H 1.09002 * 109.46792 * 60.00666 * 15 14 13 33 33 H 1.08994 * 109.47182 * 299.99901 * 15 14 13 34 34 H 1.09000 * 109.47291 * 60.00076 * 16 15 14 35 35 H 1.09008 * 109.47277 * 300.00049 * 16 15 14 36 36 H 1.08008 * 120.02222 * 359.70482 * 19 18 17 37 37 H 1.08005 * 119.96965 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.94305 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.97273 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.03106 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2823 0.5652 5 6 1.6675 2.2684 -0.7272 6 7 2.0432 3.4889 -0.4176 7 14 0.4840 1.9866 -2.1448 8 1 -0.9112 2.1585 -1.6664 9 1 0.7618 2.9681 -3.2240 10 1 0.6609 0.6092 -2.6708 11 6 2.1388 -1.1671 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 6 1.6146 -4.9602 -0.0001 16 6 2.6088 -6.1231 0.0005 17 8 1.8944 -7.3607 -0.0007 18 6 2.6345 -8.5004 -0.0008 19 6 2.0060 -9.7372 -0.0015 20 6 2.7606 -10.8942 -0.0021 21 6 4.1412 -10.8205 -0.0017 22 6 4.7702 -9.5892 -0.0015 23 6 4.0201 -8.4292 -0.0008 24 1 -0.3634 -0.0871 1.0240 25 1 -0.3633 0.9303 -0.4366 26 1 -0.3633 -0.8432 -0.5874 27 1 1.7058 4.2436 -0.9251 28 1 0.7591 -2.5302 -0.8897 29 1 0.7584 -2.5298 0.8902 30 1 3.0062 -3.5774 0.8905 31 1 3.0063 -3.5774 -0.8894 32 1 0.9883 -5.0177 -0.8904 33 1 0.9877 -5.0182 0.8896 34 1 3.2349 -6.0655 0.8910 35 1 3.2362 -6.0653 -0.8891 36 1 0.9275 -9.7952 0.0030 37 1 2.2717 -11.8573 -0.0022 38 1 4.7294 -11.7263 -0.0018 39 1 5.8487 -9.5343 -0.0015 40 1 4.5117 -7.4676 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184365486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:25 Heat of formation + Delta-G solvation = -48.754190 kcal Electronic energy + Delta-G solvation = -20258.781528 eV Core-core repulsion = 17039.049046 eV Total energy + Delta-G solvation = -3219.732482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.28368 -38.78542 -37.70331 -35.17160 -34.36823 -32.05994 -31.30929 -30.45896 -29.16424 -26.46581 -25.58357 -23.90396 -22.77592 -21.95236 -20.99004 -18.72703 -18.33776 -17.05803 -16.49207 -16.31288 -16.03445 -15.88911 -15.50608 -15.08874 -14.64472 -14.07594 -13.89679 -13.66352 -13.42693 -13.02424 -12.66526 -12.46759 -12.33820 -12.07299 -12.00668 -11.81866 -11.62673 -11.33463 -11.16876 -10.93691 -10.85123 -10.75771 -10.44076 -10.35199 -9.92817 -9.26648 -9.07590 -8.49250 -8.42720 -7.73755 -6.39438 -3.96230 1.07883 1.20599 2.98884 3.02265 3.21182 3.25474 3.54515 3.75040 4.14196 4.43807 4.56522 4.64107 4.80471 4.85033 4.88741 4.96925 5.10376 5.14267 5.17222 5.33510 5.37939 5.45036 5.55532 5.72853 5.74035 5.82257 5.85851 5.92394 6.02592 6.08190 6.14706 6.16417 6.27111 6.28896 6.40334 6.50859 6.55015 7.23696 7.55037 8.29058 8.51736 8.97448 9.32630 9.78475 10.72849 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046917 B = 0.002555 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.650423 B =10955.591335 C =11231.559498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.473 5.473 3 C -0.317 4.317 4 H 0.105 0.895 5 C 0.057 3.943 6 N -0.865 5.865 7 Si 0.882 3.118 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.265 1.265 11 C 0.462 3.538 12 O -0.568 6.568 13 C -0.135 4.135 14 C -0.097 4.097 15 C -0.118 4.118 16 C 0.059 3.941 17 O -0.316 6.316 18 C 0.134 3.866 19 C -0.157 4.157 20 C -0.083 4.083 21 C -0.164 4.164 22 C -0.080 4.080 23 C -0.210 4.210 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.273 0.727 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 -24.796 0.132 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.196 5.196 3 C -0.444 4.444 4 H 0.122 0.878 5 C -0.149 4.149 6 N -0.502 5.502 7 Si 0.709 3.291 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.190 1.190 11 C 0.250 3.750 12 O -0.451 6.451 13 C -0.175 4.175 14 C -0.135 4.135 15 C -0.155 4.155 16 C -0.016 4.016 17 O -0.230 6.230 18 C 0.088 3.912 19 C -0.175 4.175 20 C -0.101 4.101 21 C -0.183 4.183 22 C -0.098 4.098 23 C -0.229 4.229 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.270 -24.516 0.101 24.621 hybrid contribution -0.542 0.227 -0.792 0.986 sum -2.811 -24.290 -0.691 24.461 Atomic orbital electron populations 1.21988 0.83464 1.01524 1.00961 1.43716 1.04029 1.05867 1.65955 1.19058 1.10099 0.85579 1.29663 0.87790 1.25387 0.97531 0.94799 0.97169 1.69760 1.43981 0.98074 1.38369 0.86898 0.80164 0.78943 0.83054 1.20312 1.21496 1.18952 1.20297 0.88207 0.84840 0.81625 1.90547 1.13999 1.87124 1.53384 1.21595 0.99027 0.93869 1.03016 1.21181 0.97648 0.90867 1.03848 1.21601 0.98098 0.92256 1.03570 1.22934 0.95591 0.81356 1.01715 1.86059 1.35959 1.12804 1.88167 1.19082 0.90065 0.86748 0.95280 1.20471 1.00575 0.89713 1.06777 1.20960 0.93864 0.97583 0.97673 1.21056 0.94737 0.97706 1.04763 1.20980 0.99816 0.91968 0.97058 1.21367 0.92946 1.00023 1.08548 0.93034 0.91714 0.92688 0.91625 0.90122 0.90110 0.91010 0.91035 0.90875 0.90842 0.91759 0.91783 0.85276 0.85504 0.86044 0.85815 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 8.78 59.85 0.53 1.78 16 2 N -0.47 -11.55 2.59 -122.20 -0.32 -11.86 16 3 C -0.32 -9.11 9.37 -14.93 -0.14 -9.25 16 4 H 0.10 3.36 7.90 -52.49 -0.41 2.94 16 5 C 0.06 1.58 5.29 -17.47 -0.09 1.49 16 6 N -0.87 -25.27 13.96 55.50 0.77 -24.49 16 7 Si 0.88 20.66 24.96 -169.99 -4.24 16.42 16 8 H -0.28 -5.98 6.69 56.52 0.38 -5.60 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 C 0.46 10.62 7.63 -10.99 -0.08 10.53 16 12 O -0.57 -15.26 15.85 5.54 0.09 -15.17 16 13 C -0.13 -2.18 4.32 -27.88 -0.12 -2.30 16 14 C -0.10 -1.39 4.50 -26.73 -0.12 -1.51 16 15 C -0.12 -1.33 5.58 -26.73 -0.15 -1.48 16 16 C 0.06 0.64 4.74 37.16 0.18 0.82 16 17 O -0.32 -3.83 10.14 -19.41 -0.20 -4.03 16 18 C 0.13 1.52 6.69 -39.22 -0.26 1.26 16 19 C -0.16 -1.56 9.99 -39.44 -0.39 -1.95 16 20 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 21 C -0.16 -1.35 10.04 -39.56 -0.40 -1.75 16 22 C -0.08 -0.72 10.04 -39.61 -0.40 -1.11 16 23 C -0.21 -2.17 9.04 -39.43 -0.36 -2.53 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 1.35 3.42 -51.93 -0.18 1.17 16 26 H 0.05 0.88 6.64 -51.93 -0.34 0.53 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.08 1.17 7.41 -51.93 -0.38 0.79 16 29 H 0.08 1.14 8.11 -51.93 -0.42 0.71 16 30 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 35 H 0.06 0.67 7.66 -51.92 -0.40 0.27 16 36 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -33.17 330.72 -6.95 -40.12 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.83 Total: 1.13 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.21 Total: -7.09 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.46 Total: -36.36 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.11 Total: -19.20 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.24 Total: 16.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.17 -6.95 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184365486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.636 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds