Wall clock time and date at job start Mon Mar 30 2020 01:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37098 * 120.00116 * 2 1 4 4 H 1.07999 * 120.00258 * 142.82386 * 3 2 1 5 5 C 1.38954 * 119.99831 * 322.82292 * 3 2 1 6 6 N 1.31407 * 119.99906 * 158.40747 * 5 3 2 7 7 Si 1.86803 * 119.99822 * 338.40985 * 5 3 2 8 8 H 1.48495 * 109.47274 * 95.72374 * 7 5 3 9 9 H 1.48506 * 109.46881 * 215.72207 * 7 5 3 10 10 H 1.48497 * 109.46941 * 335.71846 * 7 5 3 11 11 C 1.34772 * 120.00103 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00015 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00114 * 0.02562 * 11 2 1 14 14 C 1.52999 * 109.47241 * 179.97438 * 13 11 2 15 15 C 1.53008 * 109.46943 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47263 * 180.02562 * 16 15 14 18 18 C 1.35895 * 117.00389 * 179.97438 * 17 16 15 19 19 C 1.38727 * 120.06070 * 179.97438 * 18 17 16 20 20 C 1.38141 * 119.94646 * 179.97438 * 19 18 17 21 21 C 1.38257 * 120.05657 * 0.02601 * 20 19 18 22 22 C 1.38266 * 120.11421 * 359.95513 * 21 20 19 23 23 C 1.38139 * 120.05248 * 0.04462 * 22 21 20 24 24 H 1.09003 * 109.47630 * 265.14010 * 1 2 3 25 25 H 1.09000 * 109.46958 * 25.14183 * 1 2 3 26 26 H 1.08993 * 109.46966 * 145.13930 * 1 2 3 27 27 H 0.97004 * 119.99673 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46873 * 59.99718 * 13 11 2 29 29 H 1.09000 * 109.47127 * 300.00345 * 13 11 2 30 30 H 1.08995 * 109.46940 * 60.00385 * 14 13 11 31 31 H 1.08994 * 109.47100 * 300.00004 * 14 13 11 32 32 H 1.09002 * 109.46792 * 60.00666 * 15 14 13 33 33 H 1.08994 * 109.47182 * 299.99901 * 15 14 13 34 34 H 1.09000 * 109.47291 * 60.00076 * 16 15 14 35 35 H 1.09008 * 109.47277 * 300.00049 * 16 15 14 36 36 H 1.08008 * 120.02222 * 359.70482 * 19 18 17 37 37 H 1.08005 * 119.96965 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.94305 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.97273 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.03106 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2823 0.5652 5 6 1.6675 2.2684 -0.7272 6 7 2.0432 3.4889 -0.4176 7 14 0.4840 1.9866 -2.1448 8 1 -0.9112 2.1585 -1.6664 9 1 0.7618 2.9681 -3.2240 10 1 0.6609 0.6092 -2.6708 11 6 2.1388 -1.1671 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 6 1.6146 -4.9602 -0.0001 16 6 2.6088 -6.1231 0.0005 17 8 1.8944 -7.3607 -0.0007 18 6 2.6345 -8.5004 -0.0008 19 6 2.0060 -9.7372 -0.0015 20 6 2.7606 -10.8942 -0.0021 21 6 4.1412 -10.8205 -0.0017 22 6 4.7702 -9.5892 -0.0015 23 6 4.0201 -8.4292 -0.0008 24 1 -0.3634 -0.0871 1.0240 25 1 -0.3633 0.9303 -0.4366 26 1 -0.3633 -0.8432 -0.5874 27 1 1.7058 4.2436 -0.9251 28 1 0.7591 -2.5302 -0.8897 29 1 0.7584 -2.5298 0.8902 30 1 3.0062 -3.5774 0.8905 31 1 3.0063 -3.5774 -0.8894 32 1 0.9883 -5.0177 -0.8904 33 1 0.9877 -5.0182 0.8896 34 1 3.2349 -6.0655 0.8910 35 1 3.2362 -6.0653 -0.8891 36 1 0.9275 -9.7952 0.0030 37 1 2.2717 -11.8573 -0.0022 38 1 4.7294 -11.7263 -0.0018 39 1 5.8487 -9.5343 -0.0015 40 1 4.5117 -7.4676 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184365486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:25 Heat of formation + Delta-G solvation = -69.813453 kcal Electronic energy + Delta-G solvation = -20259.694726 eV Core-core repulsion = 17039.049046 eV Total energy + Delta-G solvation = -3220.645680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04555 -40.55081 -38.46559 -36.86419 -35.71677 -34.12903 -32.03700 -31.37307 -30.15618 -28.15331 -27.15442 -25.20715 -23.57494 -22.82839 -21.95315 -20.44313 -19.13826 -19.05451 -17.81627 -17.44123 -17.25539 -16.99004 -16.65730 -16.49004 -15.60017 -15.33188 -15.26731 -14.62294 -14.49954 -14.31235 -14.20290 -14.11835 -13.66277 -13.45794 -13.09028 -12.84035 -12.71567 -12.61600 -12.39568 -12.30312 -12.06390 -11.88898 -11.80903 -11.65628 -11.45651 -11.06323 -10.36602 -9.94810 -9.70465 -9.16334 -8.52610 -6.15430 0.39752 0.50067 1.19789 1.32810 1.45548 1.97323 2.16040 2.17717 2.78704 2.85676 2.96558 3.81015 3.90043 3.92277 3.93917 4.02868 4.25788 4.26640 4.31002 4.32282 4.38572 4.51294 4.55965 4.58339 4.65330 4.78694 4.81379 4.84786 4.86742 4.99220 5.09857 5.27927 5.37062 5.42139 5.49626 5.53385 5.61041 5.88285 6.02008 6.45520 6.56220 6.94165 7.31071 7.88999 8.65044 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046917 B = 0.002555 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.650423 B =10955.591335 C =11231.559498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.489 5.489 3 C -0.339 4.339 4 H 0.039 0.961 5 C 0.005 3.995 6 N -0.914 5.914 7 Si 0.960 3.040 8 H -0.238 1.238 9 H -0.292 1.292 10 H -0.256 1.256 11 C 0.451 3.549 12 O -0.622 6.622 13 C -0.122 4.122 14 C -0.092 4.092 15 C -0.104 4.104 16 C 0.059 3.941 17 O -0.328 6.328 18 C 0.107 3.893 19 C -0.170 4.170 20 C -0.083 4.083 21 C -0.165 4.165 22 C -0.089 4.089 23 C -0.226 4.226 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.280 0.720 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 -27.651 -0.941 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.211 5.211 3 C -0.467 4.467 4 H 0.057 0.943 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.782 3.218 8 H -0.162 1.162 9 H -0.219 1.219 10 H -0.180 1.180 11 C 0.242 3.758 12 O -0.507 6.507 13 C -0.162 4.162 14 C -0.130 4.130 15 C -0.142 4.142 16 C -0.016 4.016 17 O -0.242 6.242 18 C 0.062 3.938 19 C -0.188 4.188 20 C -0.101 4.101 21 C -0.183 4.183 22 C -0.107 4.107 23 C -0.245 4.245 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.029 -27.389 -0.950 27.863 hybrid contribution 0.441 1.059 -0.365 1.204 sum -4.588 -26.329 -1.315 26.758 Atomic orbital electron populations 1.22257 0.79968 1.02839 1.03444 1.43905 1.06210 1.04726 1.66299 1.18665 1.09304 0.88354 1.30371 0.94263 1.26274 1.00098 0.93830 0.99485 1.69885 1.46224 0.99286 1.39759 0.85685 0.79170 0.78913 0.77998 1.16243 1.21925 1.17962 1.21579 0.88077 0.86716 0.79402 1.90516 1.16835 1.88201 1.55183 1.21616 0.99011 0.89653 1.05877 1.21090 0.97370 0.92114 1.02470 1.21427 0.97735 0.90307 1.04687 1.22889 0.95545 0.81312 1.01852 1.86005 1.36438 1.13151 1.88653 1.19374 0.90613 0.86952 0.96863 1.20741 1.01296 0.89809 1.06973 1.21335 0.94077 0.98231 0.96446 1.21438 0.95093 0.98372 1.03425 1.21295 1.00858 0.91916 0.96659 1.21520 0.92944 1.00759 1.09229 0.90638 0.92824 0.88127 0.91049 0.87053 0.86933 0.92533 0.92597 0.89710 0.89652 0.91720 0.91767 0.84538 0.82771 0.83520 0.84047 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.01 8.78 127.77 1.12 3.13 16 2 N -0.49 -23.66 2.59 -658.91 -1.70 -25.36 16 3 C -0.34 -20.31 9.37 84.04 0.79 -19.52 16 4 H 0.04 2.77 7.90 -2.91 -0.02 2.75 16 5 C 0.00 0.27 5.29 84.93 0.45 0.72 16 6 N -0.91 -55.22 13.96 21.66 0.30 -54.91 16 7 Si 0.96 41.86 24.96 68.60 1.71 43.57 16 8 H -0.24 -8.92 6.69 99.48 0.67 -8.25 16 9 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 11 C 0.45 20.66 7.63 87.66 0.67 21.32 16 12 O -0.62 -34.80 15.85 -3.08 -0.05 -34.85 16 13 C -0.12 -3.57 4.32 29.85 0.13 -3.45 16 14 C -0.09 -2.51 4.50 30.60 0.14 -2.38 16 15 C -0.10 -2.10 5.58 30.60 0.17 -1.93 16 16 C 0.06 1.23 4.74 71.98 0.34 1.58 16 17 O -0.33 -7.64 10.14 -92.37 -0.94 -8.58 16 18 C 0.11 2.36 6.69 22.51 0.15 2.51 16 19 C -0.17 -3.15 9.99 22.36 0.22 -2.92 16 20 C -0.08 -1.19 10.04 22.25 0.22 -0.97 16 21 C -0.17 -2.33 10.04 22.28 0.22 -2.11 16 22 C -0.09 -1.47 10.04 22.25 0.22 -1.25 16 23 C -0.23 -4.56 9.04 22.37 0.20 -4.35 16 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.05 2.02 3.42 -2.39 -0.01 2.01 16 26 H 0.10 2.63 6.64 -2.39 -0.02 2.62 16 27 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.11 2.66 7.41 -2.39 -0.02 2.64 16 29 H 0.11 2.66 8.11 -2.39 -0.02 2.64 16 30 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 31 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 35 H 0.06 1.31 7.66 -2.38 -0.02 1.30 16 36 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.13 2.46 6.30 -2.91 -0.02 2.44 16 Total: -1.00 -78.06 330.72 5.36 -72.70 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.98 Total: 17.05 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.05 Total: -9.62 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.40 Total: -80.27 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.99 Total: -43.43 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.71 Total: 43.57 kcal Total: -78.06 5.36 -72.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184365486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.886 kcal (2) G-P(sol) polarization free energy of solvation -78.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds