Wall clock time and date at job start Mon Mar 30 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37101 * 120.00009 * 2 1 4 4 H 1.08000 * 120.00104 * 202.94366 * 3 2 1 5 5 C 1.38948 * 119.99468 * 22.94411 * 3 2 1 6 6 N 1.31414 * 120.00509 * 11.73202 * 5 3 2 7 7 Si 1.86810 * 119.99686 * 191.72682 * 5 3 2 8 8 H 1.48496 * 109.46795 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47051 * 120.00121 * 7 5 3 10 10 H 1.48500 * 109.47223 * 240.00111 * 7 5 3 11 11 C 1.34781 * 120.00212 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99734 * 179.97438 * 11 2 1 13 13 C 1.50696 * 119.99796 * 0.02562 * 11 2 1 14 14 H 1.09006 * 109.47541 * 54.99798 * 13 11 2 15 15 O 1.42902 * 109.47116 * 174.99547 * 13 11 2 16 16 C 1.52992 * 109.47149 * 294.99944 * 13 11 2 17 17 C 1.53006 * 109.47341 * 175.00331 * 16 13 11 18 18 C 1.52997 * 109.47030 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.46878 * 179.97438 * 18 17 16 20 20 C 1.38240 * 119.99939 * 269.72218 * 19 18 17 21 21 C 1.38233 * 120.00035 * 179.76264 * 20 19 18 22 22 C 1.38236 * 119.99790 * 0.49619 * 21 20 19 23 23 C 1.38236 * 120.00447 * 359.78085 * 22 21 20 24 24 C 1.38236 * 120.00141 * 90.00184 * 19 18 17 25 25 H 1.09000 * 109.46661 * 272.96187 * 1 2 3 26 26 H 1.08995 * 109.47084 * 32.96414 * 1 2 3 27 27 H 1.08998 * 109.47076 * 152.96641 * 1 2 3 28 28 H 0.97001 * 119.99858 * 180.02562 * 6 5 3 29 29 H 0.96701 * 113.99714 * 60.00126 * 15 13 11 30 30 H 1.08996 * 109.47907 * 54.99783 * 16 13 11 31 31 H 1.09010 * 109.46943 * 294.99858 * 16 13 11 32 32 H 1.09001 * 109.47133 * 59.99846 * 17 16 13 33 33 H 1.08996 * 109.46722 * 299.99759 * 17 16 13 34 34 H 1.09004 * 109.47386 * 299.99863 * 18 17 16 35 35 H 1.09001 * 109.47200 * 59.99995 * 18 17 16 36 36 H 1.08000 * 119.99530 * 0.02562 * 20 19 18 37 37 H 1.07998 * 120.00253 * 180.25702 * 21 20 19 38 38 H 1.08007 * 119.99729 * 179.76572 * 22 21 20 39 39 H 1.07993 * 120.00140 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00077 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1664 1.2243 -0.3646 5 6 1.5381 2.3430 0.4691 6 7 0.3998 2.2652 1.1212 7 14 2.3330 4.0074 0.1729 8 1 3.5997 3.8239 -0.5800 9 1 1.4096 4.8639 -0.6138 10 1 2.6212 4.6574 1.4766 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 1 0.6936 -2.4917 -0.8438 15 8 2.3097 -3.5558 -0.1196 16 6 0.6021 -2.6100 1.3052 17 6 -0.2597 -3.8733 1.2526 18 6 -1.0426 -4.0113 2.5598 19 6 -1.8918 -5.2551 2.5078 20 6 -3.1827 -5.1907 2.0174 21 6 -3.9600 -6.3326 1.9651 22 6 -3.4499 -7.5369 2.4126 23 6 -2.1610 -7.6004 2.9083 24 6 -1.3819 -6.4594 2.9557 25 1 -0.3632 0.0531 1.0263 26 1 -0.3633 0.8622 -0.5591 27 1 -0.3633 -0.9154 -0.4671 28 1 -0.0278 3.0721 1.4484 29 1 2.9568 -3.6006 0.5976 30 1 -0.0387 -1.7384 1.4385 31 1 1.2987 -2.6800 2.1408 32 1 0.3811 -4.7449 1.1195 33 1 -0.9562 -3.8033 0.4172 34 1 -0.3457 -4.0813 3.3951 35 1 -1.6833 -3.1396 2.6934 36 1 -3.5824 -4.2490 1.6713 37 1 -4.9671 -6.2831 1.5782 38 1 -4.0586 -8.4284 2.3752 39 1 -1.7628 -8.5412 3.2582 40 1 -0.3748 -6.5090 3.3426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187045419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:31 Heat of formation + Delta-G solvation = -69.959429 kcal Electronic energy + Delta-G solvation = -21101.690371 eV Core-core repulsion = 17881.038361 eV Total energy + Delta-G solvation = -3220.652010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.44994 -38.98303 -36.29985 -34.96164 -34.21034 -31.96096 -31.01696 -30.97088 -28.14122 -26.21814 -25.12789 -23.58917 -22.65196 -21.50164 -20.74823 -19.29993 -16.98229 -16.87000 -16.59981 -15.89899 -15.50545 -15.22961 -14.77311 -14.58244 -14.09147 -13.99378 -13.51293 -13.39336 -13.16085 -13.10550 -12.66372 -11.98029 -11.84102 -11.69193 -11.62110 -11.44805 -11.28474 -11.06357 -10.95585 -10.92560 -10.70531 -10.37949 -10.32096 -10.27190 -9.92713 -9.06439 -9.01059 -8.76451 -8.20370 -7.72134 -6.35086 -3.92041 1.27996 1.31096 3.12392 3.23487 3.30666 3.68693 3.80538 4.10687 4.66208 4.76093 4.80117 4.87591 4.93959 5.03789 5.06631 5.15468 5.25362 5.40910 5.42550 5.52018 5.61399 5.75177 5.81900 5.90835 5.99820 6.02067 6.05938 6.20284 6.26080 6.38502 6.41108 6.44915 6.55244 6.63493 6.80672 6.93130 7.16987 7.53390 7.97959 8.15534 8.44951 9.14803 9.37769 9.92267 10.68174 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028172 B = 0.003513 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.648276 B = 7969.568348 C = 8653.828446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.442 5.442 3 C -0.307 4.307 4 H 0.098 0.902 5 C 0.031 3.969 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.268 1.268 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.416 3.584 12 O -0.586 6.586 13 C 0.100 3.900 14 H 0.106 0.894 15 O -0.548 6.548 16 C -0.152 4.152 17 C -0.104 4.104 18 C -0.085 4.085 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.267 0.733 29 H 0.376 0.624 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 -14.211 3.647 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.161 5.161 3 C -0.435 4.435 4 H 0.116 0.884 5 C -0.172 4.172 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.204 3.796 12 O -0.471 6.471 13 C 0.038 3.962 14 H 0.123 0.877 15 O -0.353 6.353 16 C -0.190 4.190 17 C -0.142 4.142 18 C -0.122 4.122 19 C -0.073 4.073 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.138 4.138 24 C -0.137 4.137 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.224 0.776 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.766 -14.175 3.187 17.506 hybrid contribution 0.354 1.077 0.466 1.226 sum -9.412 -13.098 3.653 16.537 Atomic orbital electron populations 1.21633 0.81258 0.98706 1.01828 1.43630 1.05471 1.04844 1.62201 1.19721 0.99800 0.83980 1.39982 0.88388 1.25339 0.96505 1.00082 0.95265 1.69986 1.17765 1.29308 1.35155 0.85864 0.79296 0.81386 0.78189 1.19227 1.20630 1.20711 1.20904 0.88637 0.85701 0.84399 1.90519 1.13902 1.86880 1.55830 1.21686 0.90198 0.86054 0.98301 0.87662 1.86455 1.47111 1.48528 1.53175 1.22382 0.99723 0.99277 0.97658 1.21487 0.98032 0.98335 0.96350 1.20695 0.97901 0.94691 0.98916 1.20019 0.94492 0.95419 0.97376 1.21120 0.93990 0.98648 0.99888 1.21141 0.99781 0.92912 0.99954 1.21109 0.95977 0.97790 1.00069 1.21133 0.94515 0.98275 0.99899 1.21097 0.99846 0.92375 1.00342 0.91807 0.91455 0.95377 0.92277 0.77578 0.89291 0.91476 0.91347 0.91916 0.90974 0.90714 0.85956 0.86270 0.86445 0.86315 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.36 7.16 59.85 0.43 2.78 16 2 N -0.44 -11.19 3.02 -122.20 -0.37 -11.56 16 3 C -0.31 -8.55 9.28 -14.93 -0.14 -8.69 16 4 H 0.10 2.89 7.42 -52.49 -0.39 2.50 16 5 C 0.03 0.82 5.11 -17.47 -0.09 0.73 16 6 N -0.88 -23.02 10.65 55.50 0.59 -22.43 16 7 Si 0.93 20.66 29.57 -169.99 -5.03 15.63 16 8 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 C 0.42 10.16 7.04 -10.99 -0.08 10.08 16 12 O -0.59 -16.52 16.02 -14.31 -0.23 -16.75 16 13 C 0.10 1.88 2.56 -27.89 -0.07 1.81 16 14 H 0.11 1.86 7.14 -51.93 -0.37 1.49 16 15 O -0.55 -10.13 12.53 -55.09 -0.69 -10.82 16 16 C -0.15 -2.39 4.60 -26.73 -0.12 -2.51 16 17 C -0.10 -1.35 5.09 -26.73 -0.14 -1.48 16 18 C -0.08 -0.97 5.35 -27.88 -0.15 -1.12 16 19 C -0.07 -0.83 5.13 -104.62 -0.54 -1.37 16 20 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 25 H 0.06 1.40 6.49 -51.93 -0.34 1.07 16 26 H 0.07 1.54 7.16 -51.93 -0.37 1.17 16 27 H 0.03 0.50 5.90 -51.93 -0.31 0.19 16 28 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.38 6.22 8.79 45.56 0.40 6.62 16 30 H 0.09 1.47 5.12 -51.93 -0.27 1.20 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 32 H 0.07 0.90 7.82 -51.93 -0.41 0.50 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -31.69 330.86 -8.57 -40.26 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.98 Total: 8.55 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.85 Total: -7.87 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.22 Total: -33.99 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.92 Total: -27.57 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.69 -8.57 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187045419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.695 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds