Wall clock time and date at job start Mon Mar 30 2020 01:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47016 * 2 1 4 4 C 1.46905 * 110.99925 * 200.24197 * 3 2 1 5 5 C 1.50690 * 109.46994 * 66.04716 * 4 3 2 6 6 H 1.08004 * 120.00392 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99919 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99925 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47391 * 0.02562 * 9 7 5 11 11 H 1.48511 * 109.47099 * 120.00058 * 9 7 5 12 12 H 1.48503 * 109.47441 * 239.99776 * 9 7 5 13 13 C 1.46905 * 111.00272 * 76.28825 * 3 2 1 14 14 C 1.52995 * 109.47311 * 200.39331 * 13 3 2 15 15 O 1.45201 * 109.47342 * 63.79064 * 14 13 3 16 16 C 1.34704 * 117.00094 * 175.28217 * 15 14 13 17 17 O 1.21473 * 120.00377 * 0.02562 * 16 15 14 18 18 C 1.47734 * 119.99806 * 179.97438 * 16 15 14 19 19 C 1.39628 * 120.14631 * 179.97438 * 18 16 15 20 20 C 1.37949 * 119.84558 * 179.97438 * 19 18 16 21 21 C 1.38366 * 120.14890 * 0.02562 * 20 19 18 22 22 C 1.38361 * 120.30458 * 359.97438 * 21 20 19 23 23 C 1.37942 * 120.15390 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47451 * 62.45235 * 1 2 3 25 25 H 1.09003 * 109.47466 * 182.45347 * 1 2 3 26 26 H 1.08996 * 109.47283 * 302.45304 * 1 2 3 27 27 H 1.08997 * 109.46893 * 240.00106 * 2 1 3 28 28 H 1.09002 * 109.46821 * 119.99906 * 2 1 3 29 29 H 1.09003 * 109.46761 * 186.04571 * 4 3 2 30 30 H 1.08999 * 109.46787 * 306.04415 * 4 3 2 31 31 H 0.97000 * 120.00174 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47204 * 80.39012 * 13 3 2 33 33 H 1.09005 * 109.46763 * 320.39087 * 13 3 2 34 34 H 1.08998 * 109.47394 * 303.78856 * 14 13 3 35 35 H 1.09005 * 109.47273 * 183.79042 * 14 13 3 36 36 H 1.07994 * 120.08045 * 359.70489 * 19 18 16 37 37 H 1.08000 * 119.92402 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.84585 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.92858 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.08216 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4083 1.4524 -0.4745 5 6 3.4629 1.0528 -1.9265 6 1 2.5568 0.7760 -2.4449 7 6 4.6699 1.0396 -2.5929 8 7 5.7733 1.3762 -1.9615 9 14 4.7377 0.5436 -4.3925 10 1 3.3698 0.2137 -4.8670 11 1 5.2819 1.6680 -5.1957 12 1 5.6154 -0.6444 -4.5459 13 6 1.8886 1.9897 1.3324 14 6 1.9118 3.5142 1.2050 15 8 0.7576 3.9537 0.4415 16 6 0.5746 5.2827 0.3201 17 8 1.3581 6.0535 0.8375 18 6 -0.5782 5.8030 -0.4433 19 6 -0.7711 7.1800 -0.5706 20 6 -1.8495 7.6589 -1.2853 21 6 -2.7390 6.7782 -1.8748 22 6 -2.5538 5.4125 -1.7525 23 6 -1.4792 4.9199 -1.0416 24 1 -0.3634 0.4753 -0.9111 25 1 -0.3634 -1.0267 0.0440 26 1 -0.3633 0.5514 0.8671 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7811 2.4707 -0.3636 30 1 4.0263 0.7732 0.1128 31 1 6.6225 1.3665 -2.4302 32 1 2.7172 1.6650 1.9618 33 1 0.9463 1.6770 1.7822 34 1 2.8241 3.8224 0.6943 35 1 1.8824 3.9623 2.1983 36 1 -0.0803 7.8685 -0.1070 37 1 -1.9997 8.7238 -1.3850 38 1 -3.5818 7.1585 -2.4328 39 1 -3.2517 4.7305 -2.2155 40 1 -1.3360 3.8537 -0.9466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209044243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:58 Heat of formation + Delta-G solvation = -59.536479 kcal Electronic energy + Delta-G solvation = -21255.571288 eV Core-core repulsion = 18035.371251 eV Total energy + Delta-G solvation = -3220.200037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28557 -38.68718 -37.17261 -35.81237 -32.64796 -31.64618 -31.06420 -30.65865 -28.97236 -26.12057 -24.37251 -22.71043 -22.50443 -22.12327 -20.73111 -19.60713 -17.94943 -16.88477 -16.53261 -16.01422 -15.89308 -15.03425 -14.72158 -14.53602 -14.42267 -13.99756 -13.63228 -13.54811 -13.14489 -12.79221 -12.67599 -12.21349 -12.05678 -11.82252 -11.73535 -11.33187 -11.20130 -11.06924 -10.84880 -10.66734 -10.42585 -10.33518 -10.25307 -10.04196 -9.66040 -9.15860 -9.12061 -9.10176 -8.43752 -7.23869 -6.02501 -4.03191 0.70050 1.26221 2.71019 2.95930 3.31308 3.38901 3.43590 3.77292 4.42753 4.69495 4.79765 4.83050 4.86173 5.02074 5.28508 5.33254 5.35545 5.44012 5.54416 5.68216 5.73479 5.81032 5.87448 6.01878 6.03289 6.11788 6.20099 6.23752 6.28711 6.33901 6.41059 6.72117 6.74570 6.78142 6.82782 7.27006 7.33241 7.81488 8.04309 8.09845 8.21072 8.54668 9.04846 9.60949 11.08603 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.004623 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.717816 B = 6054.747532 C = 6473.807301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.056 3.944 3 N -0.530 5.530 4 C 0.189 3.811 5 C -0.504 4.504 6 H 0.065 0.935 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.052 3.948 14 C 0.079 3.921 15 O -0.327 6.327 16 C 0.503 3.497 17 O -0.516 6.516 18 C -0.118 4.118 19 C -0.059 4.059 20 C -0.136 4.136 21 C -0.091 4.091 22 C -0.135 4.135 23 C -0.057 4.057 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.017 0.983 29 H 0.029 0.971 30 H -0.009 1.009 31 H 0.260 0.740 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.373 7.030 3.961 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 N -0.255 5.255 4 C 0.064 3.936 5 C -0.543 4.543 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.077 4.077 14 C 0.005 3.995 15 O -0.242 6.242 16 C 0.348 3.652 17 O -0.407 6.407 18 C -0.120 4.120 19 C -0.077 4.077 20 C -0.154 4.154 21 C -0.109 4.109 22 C -0.153 4.153 23 C -0.075 4.075 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.207 7.492 3.776 18.250 hybrid contribution 0.954 -0.613 -0.362 1.191 sum -15.253 6.879 3.414 17.077 Atomic orbital electron populations 1.21771 0.96560 0.99787 1.01771 1.21962 0.94312 0.90048 1.00852 1.62114 1.25645 1.17094 1.20664 1.19807 0.81527 0.96721 0.95541 1.21179 0.93351 1.44527 0.95221 0.91720 1.24989 0.95631 0.95617 0.98405 1.69964 0.98434 1.48893 1.36570 0.86467 0.78069 0.78054 0.84995 1.19624 1.21048 1.21133 1.22128 1.00882 0.91794 0.92857 1.23212 0.86762 0.95327 0.94156 1.86602 1.47262 1.22719 1.67604 1.21175 0.84444 0.81601 0.77943 1.90800 1.45233 1.58571 1.46108 1.19244 0.95775 0.94110 1.02825 1.21295 0.96782 0.93826 0.95818 1.21091 0.95145 1.00121 0.99078 1.21417 0.98509 0.93567 0.97397 1.21194 0.98430 0.95603 1.00071 1.21628 0.92102 1.00814 0.92921 0.92260 0.93663 0.93643 0.89570 0.96513 0.95254 0.99162 0.92996 0.93163 0.90978 0.90409 0.91751 0.84655 0.85284 0.85616 0.85200 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.05 37.16 0.37 -1.80 16 2 C 0.06 1.07 5.50 -3.83 -0.02 1.05 16 3 N -0.53 -11.20 4.29 -236.07 -1.01 -12.21 16 4 C 0.19 4.88 4.54 -4.98 -0.02 4.85 16 5 C -0.50 -14.10 8.23 -34.44 -0.28 -14.39 16 6 H 0.06 1.80 7.32 -52.48 -0.38 1.41 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 C 0.05 0.92 5.21 -3.82 -0.02 0.90 16 14 C 0.08 1.42 5.71 37.16 0.21 1.63 16 15 O -0.33 -5.87 9.41 -40.50 -0.38 -6.25 16 16 C 0.50 8.77 7.90 34.61 0.27 9.05 16 17 O -0.52 -10.03 16.08 -19.25 -0.31 -10.34 16 18 C -0.12 -1.71 5.87 -104.98 -0.62 -2.33 16 19 C -0.06 -0.73 9.60 -39.17 -0.38 -1.11 16 20 C -0.14 -1.33 10.03 -39.64 -0.40 -1.73 16 21 C -0.09 -0.82 10.04 -39.49 -0.40 -1.22 16 22 C -0.14 -1.36 10.03 -39.64 -0.40 -1.76 16 23 C -0.06 -0.72 9.62 -39.17 -0.38 -1.09 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.65 6.74 -51.93 -0.35 0.30 16 27 H 0.09 1.82 6.58 -51.93 -0.34 1.48 16 28 H 0.02 0.30 7.99 -51.93 -0.41 -0.11 16 29 H 0.03 0.82 6.62 -51.93 -0.34 0.47 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.05 0.87 7.99 -51.93 -0.41 0.45 16 33 H 0.07 1.12 6.50 -51.93 -0.34 0.78 16 34 H 0.08 1.58 6.73 -51.93 -0.35 1.23 16 35 H 0.06 1.00 8.04 -51.93 -0.42 0.59 16 36 H 0.14 1.63 7.65 -52.49 -0.40 1.23 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.14 1.82 7.61 -52.49 -0.40 1.42 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -31.95 338.37 -8.86 -40.81 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.83 Total: -1.25 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.15 Total: -6.49 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.28 Total: -38.31 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.69 Total: -16.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.95 -8.86 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209044243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.723 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds