Wall clock time and date at job start Mon Mar 30 2020 01:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47016 * 2 1 4 4 C 1.46905 * 110.99925 * 200.24197 * 3 2 1 5 5 C 1.50690 * 109.46994 * 66.04716 * 4 3 2 6 6 H 1.08004 * 120.00392 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99919 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99925 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47391 * 0.02562 * 9 7 5 11 11 H 1.48511 * 109.47099 * 120.00058 * 9 7 5 12 12 H 1.48503 * 109.47441 * 239.99776 * 9 7 5 13 13 C 1.46905 * 111.00272 * 76.28825 * 3 2 1 14 14 C 1.52995 * 109.47311 * 200.39331 * 13 3 2 15 15 O 1.45201 * 109.47342 * 63.79064 * 14 13 3 16 16 C 1.34704 * 117.00094 * 175.28217 * 15 14 13 17 17 O 1.21473 * 120.00377 * 0.02562 * 16 15 14 18 18 C 1.47734 * 119.99806 * 179.97438 * 16 15 14 19 19 C 1.39628 * 120.14631 * 179.97438 * 18 16 15 20 20 C 1.37949 * 119.84558 * 179.97438 * 19 18 16 21 21 C 1.38366 * 120.14890 * 0.02562 * 20 19 18 22 22 C 1.38361 * 120.30458 * 359.97438 * 21 20 19 23 23 C 1.37942 * 120.15390 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47451 * 62.45235 * 1 2 3 25 25 H 1.09003 * 109.47466 * 182.45347 * 1 2 3 26 26 H 1.08996 * 109.47283 * 302.45304 * 1 2 3 27 27 H 1.08997 * 109.46893 * 240.00106 * 2 1 3 28 28 H 1.09002 * 109.46821 * 119.99906 * 2 1 3 29 29 H 1.09003 * 109.46761 * 186.04571 * 4 3 2 30 30 H 1.08999 * 109.46787 * 306.04415 * 4 3 2 31 31 H 0.97000 * 120.00174 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47204 * 80.39012 * 13 3 2 33 33 H 1.09005 * 109.46763 * 320.39087 * 13 3 2 34 34 H 1.08998 * 109.47394 * 303.78856 * 14 13 3 35 35 H 1.09005 * 109.47273 * 183.79042 * 14 13 3 36 36 H 1.07994 * 120.08045 * 359.70489 * 19 18 16 37 37 H 1.08000 * 119.92402 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.84585 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.92858 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.08216 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4083 1.4524 -0.4745 5 6 3.4629 1.0528 -1.9265 6 1 2.5568 0.7760 -2.4449 7 6 4.6699 1.0396 -2.5929 8 7 5.7733 1.3762 -1.9615 9 14 4.7377 0.5436 -4.3925 10 1 3.3698 0.2137 -4.8670 11 1 5.2819 1.6680 -5.1957 12 1 5.6154 -0.6444 -4.5459 13 6 1.8886 1.9897 1.3324 14 6 1.9118 3.5142 1.2050 15 8 0.7576 3.9537 0.4415 16 6 0.5746 5.2827 0.3201 17 8 1.3581 6.0535 0.8375 18 6 -0.5782 5.8030 -0.4433 19 6 -0.7711 7.1800 -0.5706 20 6 -1.8495 7.6589 -1.2853 21 6 -2.7390 6.7782 -1.8748 22 6 -2.5538 5.4125 -1.7525 23 6 -1.4792 4.9199 -1.0416 24 1 -0.3634 0.4753 -0.9111 25 1 -0.3634 -1.0267 0.0440 26 1 -0.3633 0.5514 0.8671 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7811 2.4707 -0.3636 30 1 4.0263 0.7732 0.1128 31 1 6.6225 1.3665 -2.4302 32 1 2.7172 1.6650 1.9618 33 1 0.9463 1.6770 1.7822 34 1 2.8241 3.8224 0.6943 35 1 1.8824 3.9623 2.1983 36 1 -0.0803 7.8685 -0.1070 37 1 -1.9997 8.7238 -1.3850 38 1 -3.5818 7.1585 -2.4328 39 1 -3.2517 4.7305 -2.2155 40 1 -1.3360 3.8537 -0.9466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209044243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:58 Heat of formation + Delta-G solvation = -78.400254 kcal Electronic energy + Delta-G solvation = -21256.389283 eV Core-core repulsion = 18035.371251 eV Total energy + Delta-G solvation = -3221.018032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57298 -39.69424 -38.76454 -37.28900 -34.78362 -32.74082 -31.98392 -31.88172 -30.72883 -27.95528 -25.55819 -24.45669 -23.69924 -23.34780 -21.92962 -21.23073 -19.10757 -18.58884 -18.15400 -17.51378 -16.97048 -16.71723 -16.04300 -15.92603 -15.65688 -15.37269 -15.16914 -14.52742 -14.41616 -14.18478 -14.08273 -13.86591 -13.62206 -13.43557 -12.84105 -12.71459 -12.60497 -12.56781 -12.47569 -12.26696 -12.01988 -11.80986 -11.78279 -11.57997 -11.38878 -11.16879 -10.62669 -10.01602 -9.95049 -8.98345 -8.21517 -6.30582 -0.28886 0.42210 1.38822 1.40029 1.51916 1.53419 1.68156 2.39277 2.84799 3.10957 3.22941 3.59530 3.93755 3.97688 4.04091 4.07698 4.23532 4.29155 4.34841 4.47193 4.48370 4.61671 4.63910 4.69375 4.81055 4.87166 5.07607 5.08629 5.11810 5.18916 5.31941 5.35768 5.37869 5.49374 5.50900 5.52434 5.66092 5.94343 6.06529 6.37488 6.61858 6.70957 6.86361 7.38906 8.90023 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.004623 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.717816 B = 6054.747532 C = 6473.807301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.054 3.946 3 N -0.538 5.538 4 C 0.205 3.795 5 C -0.518 4.518 6 H 0.063 0.937 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.277 1.277 13 C 0.055 3.945 14 C 0.082 3.918 15 O -0.332 6.332 16 C 0.498 3.502 17 O -0.549 6.549 18 C -0.150 4.150 19 C -0.072 4.072 20 C -0.131 4.131 21 C -0.077 4.077 22 C -0.133 4.133 23 C -0.068 4.068 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.026 0.974 29 H -0.001 1.001 30 H -0.036 1.036 31 H 0.263 0.737 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.507 7.134 2.725 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.074 4.074 3 N -0.263 5.263 4 C 0.079 3.921 5 C -0.556 4.556 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.202 1.202 13 C -0.073 4.073 14 C 0.007 3.993 15 O -0.247 6.247 16 C 0.346 3.654 17 O -0.442 6.442 18 C -0.151 4.151 19 C -0.091 4.091 20 C -0.149 4.149 21 C -0.094 4.094 22 C -0.151 4.151 23 C -0.086 4.086 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.017 0.983 30 H -0.018 1.018 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.178 0.822 38 H 0.184 0.816 39 H 0.176 0.824 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.372 7.583 2.549 20.959 hybrid contribution 1.844 -0.592 0.042 1.938 sum -17.528 6.991 2.591 19.048 Atomic orbital electron populations 1.21667 0.93238 1.01711 1.02011 1.22029 0.96902 0.88450 1.00028 1.62045 1.22335 1.18861 1.23029 1.19426 0.83908 0.94009 0.94750 1.21481 0.93447 1.44366 0.96298 0.91839 1.25913 0.95179 0.95473 1.03214 1.70094 0.99087 1.49965 1.38583 0.85364 0.78562 0.77806 0.79092 1.18500 1.20760 1.20218 1.22204 1.02598 0.91230 0.91263 1.23128 0.85591 0.95759 0.94781 1.86600 1.46902 1.23461 1.67779 1.21887 0.84994 0.81005 0.77564 1.90764 1.46671 1.58957 1.47771 1.19266 0.95763 0.95359 1.04685 1.21424 0.97997 0.92874 0.96775 1.21480 0.93803 1.02016 0.97563 1.21916 0.98774 0.92873 0.95888 1.21551 0.97645 0.96896 0.98978 1.21671 0.92945 1.00274 0.93760 0.93077 0.90993 0.92188 0.92220 0.95546 0.98271 1.01841 0.92786 0.92722 0.87824 0.93990 0.89537 0.85359 0.82159 0.81648 0.82427 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 10.05 71.98 0.72 -2.97 16 2 C 0.05 2.02 5.50 86.30 0.47 2.49 16 3 N -0.54 -23.20 4.29 -900.80 -3.86 -27.06 16 4 C 0.21 11.12 4.54 85.55 0.39 11.51 16 5 C -0.52 -29.81 8.23 25.60 0.21 -29.60 16 6 H 0.06 3.59 7.32 -2.91 -0.02 3.57 16 7 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 8 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 9 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.06 1.95 5.21 86.30 0.45 2.40 16 14 C 0.08 3.03 5.71 71.98 0.41 3.44 16 15 O -0.33 -12.36 9.41 -56.14 -0.53 -12.89 16 16 C 0.50 18.18 7.90 70.33 0.56 18.73 16 17 O -0.55 -22.54 16.08 19.92 0.32 -22.22 16 18 C -0.15 -4.38 5.87 -20.10 -0.12 -4.50 16 19 C -0.07 -1.77 9.60 22.54 0.22 -1.55 16 20 C -0.13 -2.17 10.03 22.23 0.22 -1.95 16 21 C -0.08 -1.07 10.04 22.33 0.22 -0.85 16 22 C -0.13 -2.29 10.03 22.23 0.22 -2.07 16 23 C -0.07 -1.68 9.62 22.54 0.22 -1.46 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.55 6.74 -2.39 -0.02 1.53 16 27 H 0.06 2.54 6.58 -2.39 -0.02 2.53 16 28 H 0.03 0.93 7.99 -2.39 -0.02 0.91 16 29 H 0.00 -0.05 6.62 -2.39 -0.02 -0.06 16 30 H -0.04 -2.10 8.12 -2.39 -0.02 -2.12 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.05 1.91 7.99 -2.39 -0.02 1.89 16 33 H 0.10 3.03 6.50 -2.38 -0.02 3.01 16 34 H 0.04 1.84 6.73 -2.39 -0.02 1.83 16 35 H 0.09 2.78 8.04 -2.38 -0.02 2.76 16 36 H 0.13 3.20 7.65 -2.91 -0.02 3.18 16 37 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 39 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 40 H 0.14 3.43 7.61 -2.91 -0.02 3.41 16 Total: -1.00 -72.59 338.37 3.92 -68.67 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.02 Total: 9.62 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 4.66 Total: -5.92 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -3.58 Total: -84.38 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.21 Total: -35.11 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.59 3.92 -68.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209044243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.733 kcal (2) G-P(sol) polarization free energy of solvation -72.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds