Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 117.00053 * 2 1 4 4 C 1.38753 * 120.05651 * 0.02672 * 3 2 1 5 5 C 1.38128 * 119.94515 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.05230 * 359.73820 * 5 4 3 7 7 C 1.38239 * 120.11443 * 0.51144 * 6 5 4 8 8 C 1.50709 * 119.97435 * 179.76591 * 7 6 5 9 9 O 1.42906 * 109.46935 * 269.72874 * 8 7 6 10 10 C 1.42903 * 113.99676 * 180.02562 * 9 8 7 11 11 C 1.53514 * 114.17081 * 149.99722 * 10 9 8 12 12 N 1.47483 * 87.92777 * 87.61994 * 11 10 9 13 13 C 1.46903 * 110.99717 * 138.70421 * 12 11 10 14 14 C 1.50694 * 109.47066 * 169.99804 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47480 * 87.83900 * 27.00973 * 12 11 10 23 23 C 1.38166 * 120.05524 * 359.49466 * 7 6 5 24 24 H 1.08998 * 109.47267 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47388 * 300.00161 * 1 2 3 26 26 H 1.09003 * 109.46913 * 60.00041 * 1 2 3 27 27 H 1.08000 * 120.02679 * 359.95052 * 4 3 2 28 28 H 1.07995 * 119.97142 * 180.02562 * 5 4 3 29 29 H 1.08008 * 119.94509 * 180.28085 * 6 5 4 30 30 H 1.09000 * 109.47386 * 149.72554 * 8 7 6 31 31 H 1.08994 * 109.46963 * 29.72487 * 8 7 6 32 32 H 1.08997 * 113.25538 * 17.04389 * 10 9 8 33 33 H 1.09000 * 113.47331 * 332.85672 * 11 10 9 34 34 H 1.08995 * 113.52785 * 202.39262 * 11 10 9 35 35 H 1.09007 * 109.47052 * 49.99488 * 13 12 11 36 36 H 1.09003 * 109.46808 * 290.00181 * 13 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 38 38 H 1.09004 * 113.47132 * 87.75237 * 22 12 11 39 39 H 1.09000 * 113.47538 * 218.21976 * 22 12 11 40 40 H 1.08006 * 120.02731 * 180.23551 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0065 7 6 4.0559 2.5171 0.0008 8 6 5.5608 2.5982 0.0014 9 8 6.0370 2.6242 -1.3457 10 6 7.4596 2.7003 -1.4579 11 6 8.0276 2.0298 -2.7167 12 7 7.8254 3.3083 -3.4238 13 6 8.9630 3.6090 -4.3032 14 6 8.6195 4.7812 -5.1858 15 1 7.6527 5.2552 -5.1021 16 6 9.5392 5.2480 -6.1009 17 7 10.7164 4.6706 -6.2031 18 14 9.1131 6.7006 -7.1953 19 1 8.4867 6.2091 -8.4488 20 1 8.1635 7.5941 -6.4846 21 1 10.3506 7.4535 -7.5226 22 6 7.9697 3.9867 -2.1223 23 6 3.4311 1.2848 0.0001 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3204 0.0002 28 1 1.3340 4.5114 0.0019 29 1 3.7923 4.6381 0.0115 30 1 5.9713 1.7289 0.5152 31 1 5.8756 3.5062 0.5156 32 1 7.9788 2.4336 -0.5374 33 1 7.4041 1.2204 -3.0964 34 1 9.0758 1.7463 -2.6234 35 1 9.1829 2.7397 -4.9230 36 1 9.8357 3.8535 -3.6976 37 1 11.3633 4.9988 -6.8472 38 1 9.0027 4.2258 -1.8694 39 1 7.2973 4.8356 -1.9982 40 1 4.0207 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210040919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = -12.141258 kcal Electronic energy + Delta-G solvation = -20515.657866 eV Core-core repulsion = 17297.513040 eV Total energy + Delta-G solvation = -3218.144826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31772 -39.50772 -37.89733 -36.18220 -32.82776 -31.79774 -30.55618 -29.04066 -27.58678 -25.98855 -25.35999 -24.86601 -22.69039 -21.66640 -21.24914 -19.37948 -18.05860 -16.57341 -16.48546 -16.22019 -16.10117 -15.92662 -15.40851 -14.93556 -14.58151 -14.10579 -13.93861 -13.57548 -13.51347 -13.16701 -12.81071 -12.53950 -12.09812 -12.00549 -11.91495 -11.50021 -11.31201 -11.15383 -11.02842 -10.89012 -10.67760 -10.45440 -10.17497 -9.61498 -9.21160 -9.12429 -9.03442 -8.38274 -8.34548 -7.73369 -5.99238 -3.99670 1.09689 1.32868 3.03250 3.35693 3.40883 3.45077 3.46052 4.04538 4.47102 4.59661 4.65014 4.81203 4.85830 4.87445 4.93273 5.07432 5.15588 5.17826 5.23649 5.30444 5.35201 5.36118 5.45813 5.58461 5.87906 5.91182 6.02314 6.12458 6.21578 6.28379 6.30776 6.45501 6.48396 6.58469 6.74392 7.20744 7.21804 7.49753 7.72842 7.93328 8.17835 8.53499 9.08458 9.64160 11.11991 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.003017 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.657341 B = 9279.063657 C = 9657.673407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.120 3.880 4 C -0.205 4.205 5 C -0.084 4.084 6 C -0.132 4.132 7 C -0.045 4.045 8 C 0.099 3.901 9 O -0.341 6.341 10 C 0.054 3.946 11 C -0.007 4.007 12 N -0.455 5.455 13 C 0.156 3.844 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.052 3.948 17 N -0.902 5.902 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.273 1.273 21 H -0.287 1.287 22 C -0.008 4.008 23 C -0.130 4.130 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.002 0.998 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 -6.732 17.426 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.076 3.924 4 C -0.224 4.224 5 C -0.102 4.102 6 C -0.151 4.151 7 C -0.045 4.045 8 C 0.022 3.978 9 O -0.260 6.260 10 C -0.005 4.005 11 C -0.136 4.136 12 N -0.178 5.178 13 C 0.029 3.971 14 C -0.540 4.540 15 H 0.081 0.919 16 C -0.148 4.148 17 N -0.542 5.542 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.198 1.198 21 H -0.213 1.213 22 C -0.138 4.138 23 C -0.148 4.148 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.020 0.980 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.419 -6.799 16.703 25.073 hybrid contribution 0.614 0.848 -0.180 1.062 sum -16.805 -5.952 16.524 24.308 Atomic orbital electron populations 1.23039 0.78512 1.03859 1.01300 1.86070 1.21279 1.26966 1.88885 1.18957 0.92224 0.84156 0.97110 1.21239 0.99912 0.92477 1.08756 1.20920 0.94524 0.97017 0.97744 1.21025 0.93712 0.98250 1.02067 1.19399 0.94510 0.92450 0.98155 1.21363 0.89895 1.00872 0.85629 1.88087 1.19955 1.94212 1.23729 1.23339 0.81434 0.98471 0.97240 1.24034 0.99190 0.97150 0.93267 1.69040 1.41032 1.00961 1.06793 1.20298 0.86923 0.97415 0.92415 1.21124 1.00680 1.13841 1.18327 0.91852 1.25015 0.94969 0.97410 0.97438 1.69961 1.06199 1.41622 1.36429 0.86471 0.77638 0.82350 0.80818 1.20617 1.19821 1.21337 1.24222 0.99987 0.97350 0.92191 1.20302 0.91305 0.98269 1.04956 0.88304 0.92766 0.92617 0.85587 0.85611 0.85509 0.92447 0.92186 0.90983 0.90108 0.91188 0.95360 0.97984 0.92987 0.91237 0.90298 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.52 10.50 -19.43 -0.20 -3.72 16 3 C 0.12 1.43 6.69 -39.22 -0.26 1.17 16 4 C -0.21 -2.13 9.04 -39.43 -0.36 -2.48 16 5 C -0.08 -0.88 10.04 -39.61 -0.40 -1.27 16 6 C -0.13 -1.56 9.69 -39.56 -0.38 -1.94 16 7 C -0.04 -0.57 5.51 -104.64 -0.58 -1.15 16 8 C 0.10 1.24 5.90 36.01 0.21 1.45 16 9 O -0.34 -5.70 10.38 -35.23 -0.37 -6.07 16 10 C 0.05 0.87 4.66 -26.20 -0.12 0.75 16 11 C -0.01 -0.13 7.52 -7.53 -0.06 -0.19 16 12 N -0.46 -10.60 6.32 -246.08 -1.55 -12.15 16 13 C 0.16 4.22 4.57 -4.98 -0.02 4.20 16 14 C -0.50 -14.84 9.39 -34.44 -0.32 -15.16 16 15 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 18 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C -0.01 -0.15 7.55 -7.54 -0.06 -0.21 16 23 C -0.13 -1.63 9.64 -39.43 -0.38 -2.01 16 24 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 26 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 27 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 28 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.07 0.93 7.88 -51.93 -0.41 0.53 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 35 H 0.03 0.82 8.08 -51.92 -0.42 0.40 16 36 H 0.00 0.07 7.30 -51.93 -0.38 -0.31 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -33.86 337.91 -9.20 -43.05 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.05 Total: -2.63 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.83 Total: -14.22 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.82 Total: -38.86 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.57 Total: -9.79 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.86 -9.20 -43.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210040919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.913 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds