Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 117.00053 * 2 1 4 4 C 1.38753 * 120.05651 * 0.02672 * 3 2 1 5 5 C 1.38128 * 119.94515 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.05230 * 359.73820 * 5 4 3 7 7 C 1.38239 * 120.11443 * 0.51144 * 6 5 4 8 8 C 1.50709 * 119.97435 * 179.76591 * 7 6 5 9 9 O 1.42906 * 109.46935 * 269.72874 * 8 7 6 10 10 C 1.42903 * 113.99676 * 180.02562 * 9 8 7 11 11 C 1.53514 * 114.17081 * 149.99722 * 10 9 8 12 12 N 1.47483 * 87.92777 * 87.61994 * 11 10 9 13 13 C 1.46903 * 110.99717 * 138.70421 * 12 11 10 14 14 C 1.50694 * 109.47066 * 169.99804 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47480 * 87.83900 * 27.00973 * 12 11 10 23 23 C 1.38166 * 120.05524 * 359.49466 * 7 6 5 24 24 H 1.08998 * 109.47267 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47388 * 300.00161 * 1 2 3 26 26 H 1.09003 * 109.46913 * 60.00041 * 1 2 3 27 27 H 1.08000 * 120.02679 * 359.95052 * 4 3 2 28 28 H 1.07995 * 119.97142 * 180.02562 * 5 4 3 29 29 H 1.08008 * 119.94509 * 180.28085 * 6 5 4 30 30 H 1.09000 * 109.47386 * 149.72554 * 8 7 6 31 31 H 1.08994 * 109.46963 * 29.72487 * 8 7 6 32 32 H 1.08997 * 113.25538 * 17.04389 * 10 9 8 33 33 H 1.09000 * 113.47331 * 332.85672 * 11 10 9 34 34 H 1.08995 * 113.52785 * 202.39262 * 11 10 9 35 35 H 1.09007 * 109.47052 * 49.99488 * 13 12 11 36 36 H 1.09003 * 109.46808 * 290.00181 * 13 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 38 38 H 1.09004 * 113.47132 * 87.75237 * 22 12 11 39 39 H 1.09000 * 113.47538 * 218.21976 * 22 12 11 40 40 H 1.08006 * 120.02731 * 180.23551 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0065 7 6 4.0559 2.5171 0.0008 8 6 5.5608 2.5982 0.0014 9 8 6.0370 2.6242 -1.3457 10 6 7.4596 2.7003 -1.4579 11 6 8.0276 2.0298 -2.7167 12 7 7.8254 3.3083 -3.4238 13 6 8.9630 3.6090 -4.3032 14 6 8.6195 4.7812 -5.1858 15 1 7.6527 5.2552 -5.1021 16 6 9.5392 5.2480 -6.1009 17 7 10.7164 4.6706 -6.2031 18 14 9.1131 6.7006 -7.1953 19 1 8.4867 6.2091 -8.4488 20 1 8.1635 7.5941 -6.4846 21 1 10.3506 7.4535 -7.5226 22 6 7.9697 3.9867 -2.1223 23 6 3.4311 1.2848 0.0001 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3204 0.0002 28 1 1.3340 4.5114 0.0019 29 1 3.7923 4.6381 0.0115 30 1 5.9713 1.7289 0.5152 31 1 5.8756 3.5062 0.5156 32 1 7.9788 2.4336 -0.5374 33 1 7.4041 1.2204 -3.0964 34 1 9.0758 1.7463 -2.6234 35 1 9.1829 2.7397 -4.9230 36 1 9.8357 3.8535 -3.6976 37 1 11.3633 4.9988 -6.8472 38 1 9.0027 4.2258 -1.8694 39 1 7.2973 4.8356 -1.9982 40 1 4.0207 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210040919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = -36.168931 kcal Electronic energy + Delta-G solvation = -20516.699784 eV Core-core repulsion = 17297.513040 eV Total energy + Delta-G solvation = -3219.186744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21052 -40.91027 -38.80715 -37.39599 -34.99695 -32.76248 -31.41252 -30.87211 -28.23551 -27.31740 -26.87864 -26.43349 -23.60201 -23.51496 -22.10275 -20.85172 -18.90294 -18.54211 -17.67804 -17.30197 -17.02112 -16.96473 -16.62292 -16.27432 -16.12212 -15.40391 -15.27177 -15.02496 -14.52560 -14.36048 -14.04372 -13.68377 -13.48527 -13.45570 -12.98114 -12.89269 -12.74965 -12.45239 -12.32795 -12.27514 -11.98685 -11.91841 -11.70043 -11.47049 -11.24825 -10.62920 -10.40925 -9.90568 -9.53146 -9.17612 -8.23861 -6.34043 0.23559 0.47632 1.38219 1.40475 1.52040 2.31252 2.38783 2.50538 2.99457 3.07795 3.46694 3.49656 3.86092 3.89145 4.01310 4.12829 4.21941 4.34504 4.37225 4.39718 4.40412 4.51211 4.53579 4.62571 4.67840 4.73143 4.73948 4.79022 4.89266 5.00804 5.05132 5.05511 5.30377 5.45524 5.58449 5.62415 5.78134 5.81132 6.09665 6.32994 6.45231 6.50985 6.80329 7.35437 8.87233 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.003017 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.657341 B = 9279.063657 C = 9657.673407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.108 3.892 4 C -0.205 4.205 5 C -0.086 4.086 6 C -0.148 4.148 7 C -0.062 4.062 8 C 0.095 3.905 9 O -0.369 6.369 10 C 0.083 3.917 11 C -0.011 4.011 12 N -0.488 5.488 13 C 0.172 3.828 14 C -0.527 4.527 15 H 0.053 0.947 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.267 1.267 21 H -0.276 1.276 22 C -0.013 4.013 23 C -0.150 4.150 24 H 0.118 0.882 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.152 0.848 28 H 0.152 0.848 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.080 0.920 35 H -0.001 1.001 36 H -0.014 1.014 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.460 -6.123 18.387 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.063 3.937 4 C -0.223 4.223 5 C -0.104 4.104 6 C -0.166 4.166 7 C -0.062 4.062 8 C 0.020 3.980 9 O -0.288 6.288 10 C 0.024 3.976 11 C -0.140 4.140 12 N -0.211 5.211 13 C 0.045 3.955 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.795 3.205 19 H -0.199 1.199 20 H -0.191 1.191 21 H -0.201 1.201 22 C -0.142 4.142 23 C -0.169 4.169 24 H 0.136 0.864 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.151 0.849 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.017 0.983 36 H 0.003 0.997 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.925 -6.204 17.686 26.635 hybrid contribution 0.970 0.589 -0.430 1.214 sum -17.955 -5.615 17.255 25.528 Atomic orbital electron populations 1.23343 0.76403 1.05560 1.02288 1.86044 1.23547 1.26830 1.88814 1.19151 0.92324 0.85039 0.97152 1.21562 1.01258 0.91900 1.07619 1.21272 0.94303 0.98153 0.96660 1.21263 0.94586 0.98328 1.02434 1.19523 0.94765 0.92832 0.99053 1.21593 0.89957 1.02616 0.83857 1.88050 1.19935 1.94097 1.26688 1.23095 0.81867 0.94876 0.97712 1.24121 1.00166 0.95468 0.94282 1.68955 1.39284 1.04218 1.08616 1.19963 0.87801 0.95410 0.92336 1.21416 1.00530 1.15008 1.19614 0.92866 1.25937 0.94680 1.00325 0.98711 1.70069 1.07122 1.43056 1.37111 0.85360 0.77845 0.78618 0.78662 1.19856 1.19099 1.20132 1.24286 1.00363 0.98730 0.90829 1.20454 0.92098 0.98371 1.05932 0.86424 0.91308 0.91984 0.83020 0.83064 0.84860 0.90420 0.90555 0.86492 0.90226 0.90154 0.98322 0.99653 0.92523 0.90909 0.90849 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.14 10.50 -92.44 -0.97 -8.11 16 3 C 0.11 2.48 6.69 22.51 0.15 2.63 16 4 C -0.20 -3.87 9.04 22.37 0.20 -3.66 16 5 C -0.09 -1.63 10.04 22.25 0.22 -1.41 16 6 C -0.15 -3.31 9.69 22.28 0.22 -3.10 16 7 C -0.06 -1.51 5.51 -19.88 -0.11 -1.62 16 8 C 0.10 2.22 5.90 71.24 0.42 2.64 16 9 O -0.37 -11.86 10.38 -148.98 -1.55 -13.40 16 10 C 0.08 2.56 4.66 30.94 0.14 2.70 16 11 C -0.01 -0.42 7.52 83.58 0.63 0.21 16 12 N -0.49 -23.11 6.32 -932.86 -5.89 -29.00 16 13 C 0.17 9.64 4.57 85.55 0.39 10.03 16 14 C -0.53 -31.95 9.39 25.60 0.24 -31.70 16 15 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 16 C 0.00 0.08 5.46 84.66 0.46 0.55 16 17 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 18 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 C -0.01 -0.49 7.55 83.58 0.63 0.15 16 23 C -0.15 -3.71 9.64 22.37 0.22 -3.49 16 24 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 26 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 27 H 0.15 1.95 6.30 -2.91 -0.02 1.93 16 28 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 29 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 31 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 32 H 0.12 2.62 7.88 -2.39 -0.02 2.60 16 33 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.08 2.82 7.91 -2.39 -0.02 2.80 16 35 H 0.00 -0.08 8.08 -2.38 -0.02 -0.10 16 36 H -0.01 -0.82 7.30 -2.39 -0.02 -0.84 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.07 2.75 7.42 -2.39 -0.02 2.73 16 39 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.13 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -74.21 337.91 -0.15 -74.36 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.01 Total: 10.10 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.93 Total: -24.75 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -5.61 Total: -86.21 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -2.52 Total: -21.52 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -74.21 -0.15 -74.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210040919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.196 kcal (2) G-P(sol) polarization free energy of solvation -74.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds