Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00096 * 2 1 4 4 C 1.38757 * 120.05560 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94211 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05664 * 359.74296 * 5 4 3 7 7 C 1.38241 * 120.11042 * 0.51572 * 6 5 4 8 8 C 1.50707 * 119.97325 * 179.76485 * 7 6 5 9 9 O 1.42899 * 109.46768 * 269.72180 * 8 7 6 10 10 C 1.42900 * 113.99779 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.88964 * 32.42357 * 10 9 8 12 12 C 1.55157 * 111.03819 * 156.33264 * 10 9 8 13 13 C 1.54334 * 103.02095 * 153.39191 * 12 10 9 14 14 N 1.47014 * 107.26782 * 338.14225 * 13 12 10 15 15 C 1.36945 * 125.64902 * 178.84833 * 14 13 12 16 16 H 1.07997 * 119.99756 * 179.68982 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68887 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47428 * 108.70537 * 358.58102 * 14 13 12 24 24 C 1.38164 * 120.06026 * 359.48365 * 7 6 5 25 25 H 1.09000 * 109.47429 * 59.99450 * 1 2 3 26 26 H 1.09000 * 109.47641 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47155 * 299.99717 * 1 2 3 28 28 H 1.08001 * 120.02698 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.96889 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.94523 * 180.27483 * 6 5 4 31 31 H 1.08996 * 109.47100 * 149.72258 * 8 7 6 32 32 H 1.08996 * 109.46936 * 29.71768 * 8 7 6 33 33 H 1.08998 * 110.71770 * 271.95360 * 12 10 9 34 34 H 1.09002 * 110.71853 * 35.04793 * 12 10 9 35 35 H 1.08998 * 109.99457 * 218.65928 * 13 12 10 36 36 H 1.09007 * 109.77698 * 97.49747 * 13 12 10 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.36579 * 143.19056 * 23 14 13 39 39 H 1.08999 * 110.36944 * 265.52330 * 23 14 13 40 40 H 1.08002 * 120.03615 * 180.27752 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0559 2.5171 0.0005 8 6 5.5608 2.5980 0.0010 9 8 6.0368 2.6241 -1.3461 10 6 7.4593 2.7012 -1.4585 11 1 7.9433 2.1805 -0.6322 12 6 7.9411 2.1454 -2.8246 13 6 9.2677 2.8986 -3.0582 14 7 9.2269 4.1186 -2.2388 15 6 10.2252 5.0515 -2.1460 16 1 10.0959 5.9200 -1.5173 17 6 11.4032 4.8807 -2.8601 18 7 11.5606 3.8224 -3.6267 19 14 12.7646 6.1535 -2.7341 20 1 13.9085 5.7409 -3.5863 21 1 12.2548 7.4707 -3.1928 22 1 13.2131 6.2606 -1.3225 23 6 7.9308 4.1747 -1.5385 24 6 3.4311 1.2847 0.0000 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3204 0.0014 29 1 1.3340 4.5113 0.0019 30 1 3.7923 4.6380 0.0113 31 1 5.9713 1.7287 0.5147 32 1 5.8756 3.5061 0.5152 33 1 8.1106 1.0703 -2.7653 34 1 7.2228 2.3784 -3.6107 35 1 9.3662 3.1623 -4.1112 36 1 10.1060 2.2734 -2.7506 37 1 12.3837 3.7033 -4.1259 38 1 8.0579 4.5872 -0.5376 39 1 7.2175 4.7709 -2.1077 40 1 4.0206 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210042182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = -28.179479 kcal Electronic energy + Delta-G solvation = -20782.629363 eV Core-core repulsion = 17563.789068 eV Total energy + Delta-G solvation = -3218.840296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29881 -38.51927 -37.53041 -35.75661 -32.41105 -31.56879 -30.52951 -29.13116 -27.62248 -27.09951 -25.79824 -24.18610 -22.67568 -21.26588 -20.27209 -20.01751 -18.02003 -16.94822 -16.51806 -16.40834 -16.10543 -15.93757 -14.98280 -14.66103 -14.45148 -14.14301 -13.69556 -13.52852 -13.31118 -12.75917 -12.70215 -12.23521 -12.08100 -11.97583 -11.69667 -11.42908 -11.24557 -11.02601 -10.88529 -10.85819 -10.64861 -10.17611 -10.10205 -9.76824 -9.68830 -9.06776 -9.01880 -8.57434 -8.34099 -6.81394 -5.68919 -3.03008 1.11731 1.33303 3.03726 3.42393 3.46018 3.47665 3.51494 4.19014 4.53373 4.60055 4.72801 4.83505 4.85561 4.97818 5.14284 5.17136 5.25362 5.34232 5.44604 5.45279 5.54788 5.63463 5.66059 5.80379 5.85776 5.92187 6.13217 6.29156 6.30784 6.49461 6.51871 6.58301 6.60266 6.71613 6.75547 7.21185 7.57446 7.64010 7.64911 7.84886 8.27966 9.23766 9.83935 10.49902 11.42752 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045668 B = 0.002951 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.969671 B = 9487.618301 C = 9899.508912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.120 3.880 4 C -0.207 4.207 5 C -0.085 4.085 6 C -0.134 4.134 7 C -0.043 4.043 8 C 0.101 3.899 9 O -0.372 6.372 10 C 0.071 3.929 11 H 0.067 0.933 12 C -0.137 4.137 13 C 0.179 3.821 14 N -0.604 5.604 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.290 1.290 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.118 3.882 24 C -0.131 4.131 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.253 0.747 38 H 0.037 0.963 39 H 0.027 0.973 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.235 -5.753 8.579 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.075 3.925 4 C -0.226 4.226 5 C -0.103 4.103 6 C -0.152 4.152 7 C -0.043 4.043 8 C 0.024 3.976 9 O -0.290 6.290 10 C 0.013 3.987 11 H 0.085 0.915 12 C -0.175 4.175 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.009 4.009 24 C -0.149 4.149 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.054 -5.933 8.325 23.405 hybrid contribution 0.585 0.823 0.204 1.030 sum -20.469 -5.110 8.529 22.756 Atomic orbital electron populations 1.23034 0.78552 1.03838 1.01270 1.86072 1.21243 1.26997 1.88899 1.18967 0.92223 0.84133 0.97154 1.21226 0.99857 0.92479 1.08991 1.20916 0.94517 0.96980 0.97851 1.21044 0.93668 0.98324 1.02195 1.19481 0.94760 0.92375 0.97688 1.21292 0.89459 1.01083 0.85774 1.87960 1.22151 1.94808 1.24121 1.23452 0.78987 0.97648 0.98637 0.91482 1.22975 0.99646 0.99578 0.95323 1.21170 0.90924 0.86636 0.95854 1.44355 1.13064 1.24035 1.51753 1.19018 0.93067 1.00279 1.23309 0.90460 1.24817 0.98135 0.98141 0.99411 1.69951 1.26484 1.28064 1.32550 0.86173 0.81457 0.80618 0.77354 1.21579 1.21156 1.21171 1.21938 0.89120 0.93924 0.95906 1.20327 0.91263 0.98347 1.05001 0.92679 0.88316 0.92759 0.85630 0.85658 0.85475 0.92496 0.92120 0.91825 0.91515 0.93615 0.93311 0.93661 0.94483 0.95487 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.52 10.50 -19.42 -0.20 -3.72 16 3 C 0.12 1.43 6.69 -39.21 -0.26 1.17 16 4 C -0.21 -2.13 9.04 -39.43 -0.36 -2.48 16 5 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 6 C -0.13 -1.61 9.70 -39.56 -0.38 -1.99 16 7 C -0.04 -0.56 5.51 -104.64 -0.58 -1.14 16 8 C 0.10 1.40 5.94 36.01 0.21 1.61 16 9 O -0.37 -6.48 10.14 -35.23 -0.36 -6.84 16 10 C 0.07 1.35 3.49 -24.58 -0.09 1.26 16 11 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 12 C -0.14 -2.75 6.69 -24.89 -0.17 -2.92 16 13 C 0.18 4.49 5.38 -3.06 -0.02 4.47 16 14 N -0.60 -16.00 3.39 -170.06 -0.58 -16.57 16 15 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -27.50 10.31 55.49 0.57 -26.93 16 19 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.12 2.58 6.97 -2.52 -0.02 2.56 16 24 C -0.13 -1.68 9.64 -39.43 -0.38 -2.06 16 25 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 32 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.05 1.26 7.52 -51.93 -0.39 0.87 16 36 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 37 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -32.34 331.43 -8.36 -40.70 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.08 Total: -2.31 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.69 Total: -6.63 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.00 Total: -43.50 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.56 Total: -10.56 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.34 -8.36 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210042182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.521 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds