Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00096 * 2 1 4 4 C 1.38757 * 120.05560 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94211 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05664 * 359.74296 * 5 4 3 7 7 C 1.38241 * 120.11042 * 0.51572 * 6 5 4 8 8 C 1.50707 * 119.97325 * 179.76485 * 7 6 5 9 9 O 1.42899 * 109.46768 * 269.72180 * 8 7 6 10 10 C 1.42900 * 113.99779 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.88964 * 32.42357 * 10 9 8 12 12 C 1.55157 * 111.03819 * 156.33264 * 10 9 8 13 13 C 1.54334 * 103.02095 * 153.39191 * 12 10 9 14 14 N 1.47014 * 107.26782 * 338.14225 * 13 12 10 15 15 C 1.36945 * 125.64902 * 178.84833 * 14 13 12 16 16 H 1.07997 * 119.99756 * 179.68982 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68887 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47428 * 108.70537 * 358.58102 * 14 13 12 24 24 C 1.38164 * 120.06026 * 359.48365 * 7 6 5 25 25 H 1.09000 * 109.47429 * 59.99450 * 1 2 3 26 26 H 1.09000 * 109.47641 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47155 * 299.99717 * 1 2 3 28 28 H 1.08001 * 120.02698 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.96889 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.94523 * 180.27483 * 6 5 4 31 31 H 1.08996 * 109.47100 * 149.72258 * 8 7 6 32 32 H 1.08996 * 109.46936 * 29.71768 * 8 7 6 33 33 H 1.08998 * 110.71770 * 271.95360 * 12 10 9 34 34 H 1.09002 * 110.71853 * 35.04793 * 12 10 9 35 35 H 1.08998 * 109.99457 * 218.65928 * 13 12 10 36 36 H 1.09007 * 109.77698 * 97.49747 * 13 12 10 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.36579 * 143.19056 * 23 14 13 39 39 H 1.08999 * 110.36944 * 265.52330 * 23 14 13 40 40 H 1.08002 * 120.03615 * 180.27752 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0559 2.5171 0.0005 8 6 5.5608 2.5980 0.0010 9 8 6.0368 2.6241 -1.3461 10 6 7.4593 2.7012 -1.4585 11 1 7.9433 2.1805 -0.6322 12 6 7.9411 2.1454 -2.8246 13 6 9.2677 2.8986 -3.0582 14 7 9.2269 4.1186 -2.2388 15 6 10.2252 5.0515 -2.1460 16 1 10.0959 5.9200 -1.5173 17 6 11.4032 4.8807 -2.8601 18 7 11.5606 3.8224 -3.6267 19 14 12.7646 6.1535 -2.7341 20 1 13.9085 5.7409 -3.5863 21 1 12.2548 7.4707 -3.1928 22 1 13.2131 6.2606 -1.3225 23 6 7.9308 4.1747 -1.5385 24 6 3.4311 1.2847 0.0000 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3204 0.0014 29 1 1.3340 4.5113 0.0019 30 1 3.7923 4.6380 0.0113 31 1 5.9713 1.7287 0.5147 32 1 5.8756 3.5061 0.5152 33 1 8.1106 1.0703 -2.7653 34 1 7.2228 2.3784 -3.6107 35 1 9.3662 3.1623 -4.1112 36 1 10.1060 2.2734 -2.7506 37 1 12.3837 3.7033 -4.1259 38 1 8.0579 4.5872 -0.5376 39 1 7.2175 4.7709 -2.1077 40 1 4.0206 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210042182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = -47.745838 kcal Electronic energy + Delta-G solvation = -20783.477824 eV Core-core repulsion = 17563.789068 eV Total energy + Delta-G solvation = -3219.688757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11653 -39.91982 -38.59258 -37.30181 -34.26589 -32.70560 -31.41008 -30.98008 -28.91268 -28.19344 -26.99998 -26.05778 -23.51754 -22.24037 -21.99629 -21.77592 -19.03254 -18.77919 -17.89088 -17.28565 -16.95594 -16.70413 -16.61527 -16.31355 -15.65968 -15.59573 -15.05645 -14.76219 -14.38743 -14.13504 -13.82748 -13.76466 -13.56796 -13.19112 -12.95190 -12.77271 -12.70809 -12.42619 -12.26977 -12.07939 -12.05074 -11.95593 -11.79600 -11.64920 -11.44778 -10.71534 -10.48997 -9.91108 -9.17828 -8.93328 -7.85728 -5.23008 0.23373 0.47281 1.46455 1.50451 1.56752 2.31879 2.46126 2.56704 3.04431 3.32907 3.71066 3.80602 3.85171 3.90459 4.05580 4.12618 4.18395 4.24308 4.34415 4.37780 4.41449 4.47910 4.57565 4.62896 4.74559 4.76010 4.77986 4.95137 5.02793 5.04618 5.07446 5.30200 5.42965 5.45371 5.61635 5.62971 5.71820 5.77777 6.14726 6.30901 6.45665 7.07868 7.74072 8.38889 9.24699 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045668 B = 0.002951 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.969671 B = 9487.618301 C = 9899.508912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.110 3.890 4 C -0.203 4.203 5 C -0.083 4.083 6 C -0.148 4.148 7 C -0.060 4.060 8 C 0.096 3.904 9 O -0.380 6.380 10 C 0.090 3.910 11 H 0.080 0.920 12 C -0.125 4.125 13 C 0.187 3.813 14 N -0.626 5.626 15 C -0.247 4.247 16 H 0.084 0.916 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.983 3.017 20 H -0.293 1.293 21 H -0.277 1.277 22 H -0.274 1.274 23 C 0.115 3.885 24 C -0.150 4.150 25 H 0.064 0.936 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.133 0.867 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.010 0.990 36 H 0.021 0.979 37 H 0.248 0.752 38 H 0.048 0.952 39 H 0.022 0.978 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.157 -5.343 9.743 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.065 3.935 4 C -0.222 4.222 5 C -0.101 4.101 6 C -0.166 4.166 7 C -0.060 4.060 8 C 0.020 3.980 9 O -0.299 6.299 10 C 0.031 3.969 11 H 0.098 0.902 12 C -0.164 4.164 13 C 0.062 3.938 14 N -0.354 5.354 15 C -0.376 4.376 16 H 0.102 0.898 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.811 3.189 20 H -0.219 1.219 21 H -0.203 1.203 22 H -0.200 1.200 23 C -0.011 4.011 24 C -0.169 4.169 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.151 0.849 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.021 -5.521 9.515 25.514 hybrid contribution 1.023 0.678 -0.128 1.234 sum -21.998 -4.843 9.387 24.403 Atomic orbital electron populations 1.23351 0.76338 1.05574 1.02351 1.86048 1.23601 1.26820 1.88790 1.19123 0.92167 0.85100 0.97074 1.21570 1.01293 0.91795 1.07520 1.21270 0.94091 0.98228 0.96514 1.21251 0.94652 0.98179 1.02545 1.19469 0.94244 0.93044 0.99219 1.21492 0.90301 1.02072 0.84099 1.87941 1.20662 1.94717 1.26610 1.23110 0.80239 0.95322 0.98183 0.90201 1.22806 0.96871 1.00343 0.96341 1.20908 0.92795 0.86488 0.93592 1.44666 1.14248 1.24024 1.52443 1.19449 0.93873 1.00992 1.23238 0.89804 1.25723 1.00610 1.00298 0.99336 1.70177 1.26741 1.29841 1.33358 0.85084 0.78078 0.78158 0.77590 1.21944 1.20305 1.20000 1.22079 0.87139 0.96149 0.95729 1.20427 0.92194 0.98230 1.06052 0.91763 0.86461 0.91377 0.82834 0.82851 0.84941 0.91226 0.91338 0.89366 0.91254 0.97215 0.96124 0.94234 0.93348 0.96007 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.97 10.50 -92.40 -0.97 -7.94 16 3 C 0.11 2.47 6.69 22.51 0.15 2.62 16 4 C -0.20 -3.66 9.04 22.37 0.20 -3.45 16 5 C -0.08 -1.51 10.04 22.25 0.22 -1.29 16 6 C -0.15 -3.32 9.70 22.28 0.22 -3.10 16 7 C -0.06 -1.51 5.51 -19.88 -0.11 -1.62 16 8 C 0.10 2.56 5.94 71.24 0.42 2.99 16 9 O -0.38 -12.78 10.14 -148.98 -1.51 -14.29 16 10 C 0.09 3.32 3.49 31.99 0.11 3.43 16 11 H 0.08 2.76 7.90 -2.39 -0.02 2.74 16 12 C -0.13 -4.99 6.69 31.79 0.21 -4.78 16 13 C 0.19 9.65 5.38 86.73 0.47 10.12 16 14 N -0.63 -33.58 3.39 -691.95 -2.35 -35.92 16 15 C -0.25 -14.20 10.28 84.03 0.86 -13.33 16 16 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 17 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 18 N -0.95 -58.34 10.31 21.65 0.22 -58.12 16 19 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 C 0.11 4.97 6.97 86.86 0.61 5.57 16 24 C -0.15 -3.77 9.64 22.37 0.22 -3.55 16 25 H 0.06 0.57 7.66 -2.39 -0.02 0.56 16 26 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.54 7.66 -2.39 -0.02 0.53 16 28 H 0.15 1.80 6.30 -2.91 -0.02 1.78 16 29 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16 32 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 33 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.01 0.56 7.52 -2.39 -0.02 0.54 16 36 H 0.02 1.16 7.37 -2.38 -0.02 1.14 16 37 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -70.51 331.43 3.59 -66.92 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.01 Total: 9.57 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.16 Total: -8.49 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -2.13 Total: -94.05 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -2.48 Total: -22.23 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -70.51 3.59 -66.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210042182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.174 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds