Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35900 * 116.99775 * 2 1 4 4 C 1.38738 * 120.05271 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94513 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05684 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94533 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47071 * 89.99910 * 7 6 5 9 9 C 1.42904 * 114.00030 * 180.02562 * 8 7 6 10 10 C 1.53513 * 114.16833 * 210.00050 * 9 8 7 11 11 N 1.47484 * 87.93060 * 220.32420 * 10 9 8 12 12 C 1.46895 * 110.99756 * 138.70311 * 11 10 9 13 13 C 1.50706 * 109.47182 * 170.00145 * 12 11 10 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46492 * 299.99554 * 17 15 13 21 21 C 1.47477 * 87.83167 * 27.01125 * 11 10 9 22 22 C 1.38268 * 120.10691 * 0.24779 * 6 5 4 23 23 C 1.38146 * 120.05917 * 359.45642 * 22 6 5 24 24 H 1.08994 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47150 * 300.00451 * 1 2 3 26 26 H 1.08999 * 109.46664 * 59.99743 * 1 2 3 27 27 H 1.08007 * 120.02496 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.97534 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47036 * 330.00119 * 7 6 5 30 30 H 1.08997 * 109.46955 * 209.99877 * 7 6 5 31 31 H 1.09003 * 113.37734 * 343.07418 * 9 8 7 32 32 H 1.09005 * 113.47855 * 105.56295 * 10 9 8 33 33 H 1.08997 * 113.47719 * 335.09320 * 10 9 8 34 34 H 1.09001 * 109.47613 * 50.00491 * 12 11 10 35 35 H 1.08998 * 109.47678 * 290.00386 * 12 11 10 36 36 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 37 37 H 1.09000 * 113.48071 * 87.76093 * 21 11 10 38 38 H 1.09004 * 113.47566 * 218.21901 * 21 11 10 39 39 H 1.07997 * 119.96697 * 179.70381 * 22 6 5 40 40 H 1.07999 * 120.03115 * 180.24671 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5169 0.0011 6 6 3.3020 3.6758 0.0016 7 6 3.9862 5.0185 0.0028 8 8 4.2030 5.4438 -1.3441 9 6 4.8503 6.7129 -1.4558 10 6 4.4679 7.5049 -2.7141 11 7 5.8835 7.9025 -2.8290 12 6 6.3314 7.8563 -4.2272 13 6 7.6909 8.4967 -4.3407 14 1 8.1740 8.8974 -3.4618 15 6 8.3207 8.5654 -5.5652 16 7 7.7351 8.0716 -6.6343 17 14 10.0061 9.3584 -5.7057 18 1 10.9709 8.6260 -4.8467 19 1 10.4620 9.3054 -7.1179 20 1 9.9253 10.7740 -5.2640 21 6 6.2328 6.6570 -2.1207 22 6 1.9212 3.6047 0.0068 23 6 1.2916 2.3751 0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 4.0209 0.3798 0.0014 28 1 5.1346 2.5750 0.0019 29 1 4.9440 4.9378 0.5169 30 1 3.3580 5.7459 0.5169 31 1 4.8209 7.2960 -0.5353 32 1 3.7971 8.3404 -2.5142 33 1 4.1255 6.8758 -3.5357 34 1 5.6220 8.3965 -4.8541 35 1 6.3900 6.8187 -4.5560 36 1 8.1783 8.1195 -7.4959 37 1 6.3614 5.8017 -2.7840 38 1 7.0577 6.7739 -1.4178 39 1 1.3344 4.5114 0.0120 40 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210346463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = -16.404473 kcal Electronic energy + Delta-G solvation = -20335.766956 eV Core-core repulsion = 17117.437263 eV Total energy + Delta-G solvation = -3218.329693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36862 -39.50668 -38.00165 -36.25198 -32.84065 -31.46508 -31.12297 -29.06022 -27.88109 -25.67456 -25.35085 -24.69391 -22.85270 -21.52986 -21.38036 -19.39408 -18.40786 -16.91321 -16.58173 -16.22415 -16.01487 -15.90757 -15.06500 -14.94783 -14.52077 -14.36361 -13.94271 -13.70480 -13.54393 -13.08245 -12.85328 -12.48375 -12.21644 -12.11452 -11.99313 -11.40024 -11.35772 -11.20377 -10.99749 -10.97939 -10.77618 -10.54285 -10.16254 -9.73079 -9.21571 -9.18588 -9.09600 -8.41511 -8.36863 -7.89511 -6.01075 -4.02560 1.14465 1.18042 2.99223 3.35440 3.38767 3.41167 3.42890 4.08102 4.45259 4.53281 4.64755 4.77158 4.81453 4.83130 4.92015 5.01267 5.11291 5.12906 5.17263 5.28290 5.33947 5.39431 5.47713 5.53667 5.84728 5.91894 6.04822 6.11578 6.13812 6.20776 6.34874 6.43113 6.47098 6.54366 6.62347 7.13023 7.22524 7.47051 7.67044 7.87730 8.12457 8.47163 9.04344 9.61199 11.10037 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.002653 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.702789 B =10549.928141 C =10749.119046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.127 3.873 4 C -0.155 4.155 5 C -0.058 4.058 6 C -0.122 4.122 7 C 0.105 3.895 8 O -0.369 6.369 9 C 0.051 3.949 10 C -0.003 4.003 11 N -0.464 5.464 12 C 0.161 3.839 13 C -0.505 4.505 14 H 0.063 0.937 15 C 0.053 3.947 16 N -0.900 5.900 17 Si 0.901 3.099 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.005 4.005 22 C -0.059 4.059 23 C -0.212 4.212 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.005 0.995 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.389 -13.596 16.201 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.173 4.173 5 C -0.076 4.076 6 C -0.123 4.123 7 C 0.029 3.971 8 O -0.287 6.287 9 C -0.008 4.008 10 C -0.132 4.132 11 N -0.189 5.189 12 C 0.035 3.965 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.148 4.148 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.134 4.134 22 C -0.077 4.077 23 C -0.231 4.231 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.096 -13.263 16.049 25.143 hybrid contribution 0.468 -0.088 -0.549 0.727 sum -13.628 -13.352 15.500 24.582 Atomic orbital electron populations 1.23056 0.78406 1.03896 1.01434 1.86067 1.21405 1.27072 1.88716 1.19077 0.92430 0.84093 0.96163 1.20425 0.91340 0.98691 1.06868 1.20929 1.00156 0.90834 0.95670 1.19595 0.93541 0.94494 1.04650 1.21259 0.98528 0.92155 0.85195 1.88051 1.79449 1.36344 1.24893 1.24028 0.94124 0.84186 0.98418 1.24046 0.95282 0.97590 0.96291 1.68950 1.02472 1.29715 1.17750 1.20255 0.96777 0.96497 0.82928 1.21061 1.01609 1.37700 0.94035 0.91907 1.25014 0.98249 0.95788 0.95718 1.69952 1.38574 1.46154 0.99286 0.86518 0.83899 0.79921 0.76822 1.20251 1.21341 1.20142 1.24240 0.96360 0.94338 0.98481 1.20860 0.93889 0.97149 0.95797 1.21198 0.99985 0.92274 1.09597 0.88276 0.92658 0.92546 0.85069 0.84979 0.92460 0.92674 0.88805 0.90406 0.91307 0.95281 0.97677 0.92842 0.91068 0.90639 0.85575 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.25 10.50 -19.43 -0.20 -3.45 16 3 C 0.13 1.40 6.69 -39.22 -0.26 1.14 16 4 C -0.15 -1.70 9.99 -39.43 -0.39 -2.10 16 5 C -0.06 -0.65 9.69 -39.61 -0.38 -1.03 16 6 C -0.12 -1.44 5.51 -104.60 -0.58 -2.02 16 7 C 0.11 1.25 5.90 36.00 0.21 1.47 16 8 O -0.37 -5.78 10.37 -35.23 -0.37 -6.15 16 9 C 0.05 0.82 4.65 -26.21 -0.12 0.70 16 10 C 0.00 -0.05 7.52 -7.55 -0.06 -0.11 16 11 N -0.46 -10.47 6.32 -246.14 -1.55 -12.03 16 12 C 0.16 4.37 4.57 -4.98 -0.02 4.34 16 13 C -0.51 -14.75 9.39 -34.44 -0.32 -15.07 16 14 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 17 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.00 -0.09 7.55 -7.56 -0.06 -0.15 16 22 C -0.06 -0.63 9.69 -39.60 -0.38 -1.02 16 23 C -0.21 -2.13 9.04 -39.43 -0.36 -2.49 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 26 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.09 1.32 7.88 -51.93 -0.41 0.91 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 34 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 1.49 7.42 -51.93 -0.39 1.10 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -32.86 337.91 -9.20 -42.06 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.05 Total: -2.28 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.83 Total: -13.71 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.82 Total: -38.65 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.57 Total: -9.60 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.86 -9.20 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210346463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.659 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds