Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35900 * 116.99775 * 2 1 4 4 C 1.38738 * 120.05271 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94513 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05684 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94533 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47071 * 89.99910 * 7 6 5 9 9 C 1.42904 * 114.00030 * 180.02562 * 8 7 6 10 10 C 1.53513 * 114.16833 * 210.00050 * 9 8 7 11 11 N 1.47484 * 87.93060 * 220.32420 * 10 9 8 12 12 C 1.46895 * 110.99756 * 138.70311 * 11 10 9 13 13 C 1.50706 * 109.47182 * 170.00145 * 12 11 10 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47050 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46492 * 299.99554 * 17 15 13 21 21 C 1.47477 * 87.83167 * 27.01125 * 11 10 9 22 22 C 1.38268 * 120.10691 * 0.24779 * 6 5 4 23 23 C 1.38146 * 120.05917 * 359.45642 * 22 6 5 24 24 H 1.08994 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47150 * 300.00451 * 1 2 3 26 26 H 1.08999 * 109.46664 * 59.99743 * 1 2 3 27 27 H 1.08007 * 120.02496 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.97534 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47036 * 330.00119 * 7 6 5 30 30 H 1.08997 * 109.46955 * 209.99877 * 7 6 5 31 31 H 1.09003 * 113.37734 * 343.07418 * 9 8 7 32 32 H 1.09005 * 113.47855 * 105.56295 * 10 9 8 33 33 H 1.08997 * 113.47719 * 335.09320 * 10 9 8 34 34 H 1.09001 * 109.47613 * 50.00491 * 12 11 10 35 35 H 1.08998 * 109.47678 * 290.00386 * 12 11 10 36 36 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 37 37 H 1.09000 * 113.48071 * 87.76093 * 21 11 10 38 38 H 1.09004 * 113.47566 * 218.21901 * 21 11 10 39 39 H 1.07997 * 119.96697 * 179.70381 * 22 6 5 40 40 H 1.07999 * 120.03115 * 180.24671 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5169 0.0011 6 6 3.3020 3.6758 0.0016 7 6 3.9862 5.0185 0.0028 8 8 4.2030 5.4438 -1.3441 9 6 4.8503 6.7129 -1.4558 10 6 4.4679 7.5049 -2.7141 11 7 5.8835 7.9025 -2.8290 12 6 6.3314 7.8563 -4.2272 13 6 7.6909 8.4967 -4.3407 14 1 8.1740 8.8974 -3.4618 15 6 8.3207 8.5654 -5.5652 16 7 7.7351 8.0716 -6.6343 17 14 10.0061 9.3584 -5.7057 18 1 10.9709 8.6260 -4.8467 19 1 10.4620 9.3054 -7.1179 20 1 9.9253 10.7740 -5.2640 21 6 6.2328 6.6570 -2.1207 22 6 1.9212 3.6047 0.0068 23 6 1.2916 2.3751 0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 4.0209 0.3798 0.0014 28 1 5.1346 2.5750 0.0019 29 1 4.9440 4.9378 0.5169 30 1 3.3580 5.7459 0.5169 31 1 4.8209 7.2960 -0.5353 32 1 3.7971 8.3404 -2.5142 33 1 4.1255 6.8758 -3.5357 34 1 5.6220 8.3965 -4.8541 35 1 6.3900 6.8187 -4.5560 36 1 8.1783 8.1195 -7.4959 37 1 6.3614 5.8017 -2.7840 38 1 7.0577 6.7739 -1.4178 39 1 1.3344 4.5114 0.0120 40 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210346463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = -39.414328 kcal Electronic energy + Delta-G solvation = -20336.764738 eV Core-core repulsion = 17117.437263 eV Total energy + Delta-G solvation = -3219.327475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20550 -40.92942 -38.88431 -37.43210 -35.01174 -32.35295 -31.97890 -30.89516 -28.51847 -27.19078 -26.83137 -26.06923 -23.63392 -23.43231 -22.20189 -20.91561 -19.13184 -18.66137 -17.95639 -17.34793 -17.15145 -16.65228 -16.47300 -16.18946 -16.11549 -15.42479 -15.13567 -14.90745 -14.53767 -14.29093 -14.05173 -13.89575 -13.63515 -13.53970 -13.03733 -12.88018 -12.80380 -12.51555 -12.28637 -12.21191 -12.03761 -11.88222 -11.72129 -11.60349 -11.22201 -10.63191 -10.37962 -9.97841 -9.75787 -9.16527 -8.24141 -6.35539 0.31508 0.37789 1.39505 1.43727 1.51897 2.35118 2.38102 2.49397 3.02830 3.07991 3.41714 3.50023 3.81169 3.87404 3.94743 4.10291 4.20391 4.35776 4.38941 4.39753 4.43471 4.52847 4.54016 4.62095 4.67099 4.73335 4.74017 4.75729 4.87796 4.94622 5.05963 5.07231 5.25459 5.34750 5.54340 5.64310 5.73595 5.77396 6.04369 6.31187 6.39336 6.41994 6.78410 7.34117 8.87263 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.002653 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.702789 B =10549.928141 C =10749.119046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.118 3.882 4 C -0.170 4.170 5 C -0.068 4.068 6 C -0.142 4.142 7 C 0.101 3.899 8 O -0.387 6.387 9 C 0.085 3.915 10 C -0.009 4.009 11 N -0.479 5.479 12 C 0.177 3.823 13 C -0.528 4.528 14 H 0.062 0.938 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.975 3.025 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.013 4.013 22 C -0.065 4.065 23 C -0.214 4.214 24 H 0.119 0.881 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.001 0.999 35 H -0.024 1.024 36 H 0.266 0.734 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.143 0.857 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.725 -13.317 17.879 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.073 3.927 4 C -0.189 4.189 5 C -0.086 4.086 6 C -0.142 4.142 7 C 0.025 3.975 8 O -0.306 6.306 9 C 0.027 3.973 10 C -0.138 4.138 11 N -0.203 5.203 12 C 0.050 3.950 13 C -0.567 4.567 14 H 0.080 0.920 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.142 4.142 22 C -0.083 4.083 23 C -0.232 4.232 24 H 0.137 0.863 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.019 0.981 35 H -0.006 1.006 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.161 0.839 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.455 -12.996 17.753 26.325 hybrid contribution 0.449 -0.296 -1.036 1.167 sum -14.006 -13.293 16.717 25.540 Atomic orbital electron populations 1.23354 0.76407 1.05614 1.02298 1.86048 1.23552 1.26840 1.88569 1.19283 0.92673 0.84815 0.95941 1.20630 0.91936 0.99028 1.07263 1.21103 1.00699 0.91022 0.95760 1.19728 0.94197 0.94481 1.05792 1.21499 0.99766 0.92769 0.83444 1.88033 1.79031 1.35828 1.27680 1.23705 0.90819 0.84567 0.98257 1.24116 0.93490 0.98747 0.97419 1.68840 1.05149 1.31622 1.14643 1.19906 0.95752 0.93964 0.85399 1.21399 1.02664 1.38222 0.94377 0.91972 1.26012 1.02697 0.96087 0.95153 1.70086 1.40508 1.47094 0.99917 0.85349 0.78404 0.79158 0.77191 1.19141 1.20610 1.19069 1.24294 0.99370 0.92219 0.98327 1.21128 0.93757 0.98108 0.95273 1.21470 1.01222 0.91736 1.08814 0.86296 0.91392 0.91992 0.84355 0.84313 0.91270 0.90366 0.85406 0.88206 0.93009 0.98075 1.00649 0.92531 0.93331 0.89430 0.83935 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.49 10.50 -92.42 -0.97 -7.46 16 3 C 0.12 2.49 6.69 22.51 0.15 2.64 16 4 C -0.17 -3.69 9.99 22.37 0.22 -3.46 16 5 C -0.07 -1.49 9.69 22.25 0.22 -1.27 16 6 C -0.14 -3.14 5.51 -19.85 -0.11 -3.25 16 7 C 0.10 2.18 5.90 71.24 0.42 2.60 16 8 O -0.39 -11.53 10.37 -148.98 -1.55 -13.07 16 9 C 0.08 2.60 4.65 30.94 0.14 2.75 16 10 C -0.01 -0.32 7.52 83.57 0.63 0.31 16 11 N -0.48 -21.78 6.32 -933.04 -5.89 -27.67 16 12 C 0.18 9.95 4.57 85.56 0.39 10.34 16 13 C -0.53 -31.41 9.39 25.60 0.24 -31.17 16 14 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 16 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 17 Si 0.98 45.32 29.54 68.60 2.03 47.35 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 C -0.01 -0.49 7.55 83.57 0.63 0.14 16 22 C -0.06 -1.27 9.69 22.25 0.22 -1.06 16 23 C -0.21 -3.95 9.04 22.37 0.20 -3.75 16 24 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 26 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 27 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 28 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 30 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 31 H 0.13 3.11 7.88 -2.39 -0.02 3.09 16 32 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 33 H 0.05 2.09 7.91 -2.39 -0.02 2.07 16 34 H 0.00 0.07 8.08 -2.39 -0.02 0.05 16 35 H -0.02 -1.47 7.30 -2.39 -0.02 -1.49 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.05 2.11 7.42 -2.39 -0.02 2.09 16 38 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 39 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.15 1.95 6.30 -2.91 -0.02 1.93 16 Total: -1.00 -72.00 337.91 -0.16 -72.15 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.01 Total: 9.99 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 4.93 Total: -23.52 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -5.61 Total: -85.44 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -2.52 Total: -20.53 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -72.00 -0.16 -72.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210346463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.738 kcal (2) G-P(sol) polarization free energy of solvation -71.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds