Wall clock time and date at job start Mon Mar 30 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36012 * 116.99543 * 2 1 4 4 C 1.38711 * 120.02392 * 0.02562 * 3 2 1 5 5 C 1.38767 * 120.53705 * 180.02562 * 4 3 2 6 6 C 1.36490 * 120.58287 * 0.02562 * 5 4 3 7 7 C 1.40768 * 120.02112 * 359.97438 * 6 5 4 8 8 C 1.41183 * 120.26084 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99566 * 154.99804 * 8 7 6 10 10 C 1.39913 * 120.00074 * 334.99776 * 8 7 6 11 11 N 1.30874 * 120.00209 * 342.14711 * 10 8 7 12 12 Si 1.86798 * 119.99950 * 162.15154 * 10 8 7 13 13 H 1.48509 * 109.47389 * 60.00058 * 12 10 8 14 14 H 1.48507 * 109.47438 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47294 * 299.99950 * 12 10 8 16 16 C 1.38881 * 120.01938 * 180.02562 * 3 2 1 17 17 O 1.35741 * 120.28264 * 359.97438 * 16 3 2 18 18 C 1.42904 * 116.99911 * 90.00568 * 17 16 3 19 19 H 1.09000 * 109.49872 * 329.99917 * 18 17 16 20 20 C 1.53109 * 109.50481 * 209.91912 * 18 17 16 21 21 C 1.53117 * 109.16276 * 182.40452 * 20 18 17 22 22 C 1.53034 * 109.28036 * 57.65057 * 21 20 18 23 23 N 1.46840 * 109.52479 * 300.82464 * 22 21 20 24 24 C 1.46854 * 111.23348 * 61.71875 * 23 22 21 25 25 H 1.09007 * 109.46567 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47264 * 299.99395 * 1 2 3 27 27 H 1.09001 * 109.47844 * 60.00254 * 1 2 3 28 28 H 1.07999 * 119.72588 * 0.04254 * 4 3 2 29 29 H 1.08004 * 119.70850 * 179.72393 * 5 4 3 30 30 H 1.07996 * 119.99019 * 179.97438 * 6 5 4 31 31 H 0.97004 * 120.00092 * 179.97438 * 11 10 8 32 32 H 1.09006 * 109.52336 * 302.30912 * 20 18 17 33 33 H 1.09002 * 109.52643 * 62.43185 * 20 18 17 34 34 H 1.09002 * 109.50724 * 177.59876 * 21 20 18 35 35 H 1.09004 * 109.50156 * 297.66990 * 21 20 18 36 36 H 1.09003 * 109.46162 * 60.83912 * 22 21 20 37 37 H 1.08996 * 109.46720 * 180.80452 * 22 21 20 38 38 H 1.00901 * 110.99987 * 297.64600 * 23 22 21 39 39 H 1.09003 * 109.49471 * 178.28221 * 24 23 22 40 40 H 1.09002 * 109.42958 * 58.31650 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2913 2.3755 0.0005 5 6 1.9101 3.6176 0.0000 6 6 3.2715 3.7152 -0.0016 7 6 4.0611 2.5498 -0.0021 8 6 5.4698 2.6449 -0.0032 9 1 6.0659 1.8355 0.3917 10 6 6.0934 3.7876 -0.5159 11 7 5.4295 4.6004 -1.2978 12 14 7.8737 4.1531 -0.0843 13 1 8.7350 3.0358 -0.5482 14 1 8.2960 5.4119 -0.7495 15 1 8.0059 4.3020 1.3872 16 6 3.4332 1.2852 -0.0005 17 8 4.1786 0.1507 -0.0005 18 6 4.5345 -0.3917 -1.2738 19 1 3.7602 -0.1494 -2.0018 20 6 4.6724 -1.9124 -1.1612 21 6 5.1121 -2.4788 -2.5141 22 6 6.4295 -1.8222 -2.9327 23 7 6.2452 -0.3685 -3.0270 24 6 5.8682 0.2052 -1.7287 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8900 28 1 0.2130 2.3142 0.0017 29 1 1.3091 4.5150 -0.0041 30 1 3.7430 4.6867 -0.0024 31 1 5.8618 5.3929 -1.6529 32 1 5.4186 -2.1555 -0.4047 33 1 3.7128 -2.3453 -0.8785 34 1 5.2533 -3.5562 -2.4291 35 1 4.3470 -2.2700 -3.2620 36 1 7.1973 -2.0436 -2.1912 37 1 6.7381 -2.2128 -3.9023 38 1 5.5657 -0.1354 -3.7356 39 1 5.7687 1.2864 -1.8239 40 1 6.6389 -0.0251 -0.9931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218280213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:50 Heat of formation + Delta-G solvation = -64.185272 kcal Electronic energy + Delta-G solvation = -22624.462781 eV Core-core repulsion = 19404.061157 eV Total energy + Delta-G solvation = -3220.401624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.31654 -38.26988 -36.66244 -35.41332 -33.52425 -31.23656 -29.81319 -29.33374 -28.19665 -26.48798 -25.08118 -23.09553 -22.41013 -20.82945 -20.53904 -19.89294 -17.87534 -16.59668 -15.80142 -15.56374 -15.48909 -14.98363 -14.83490 -14.53963 -14.27702 -13.87787 -13.57642 -13.12531 -12.82380 -12.51659 -12.16554 -12.00414 -11.75720 -11.56864 -11.39486 -11.18184 -11.00724 -10.85550 -10.70158 -10.58310 -10.48309 -10.35517 -10.05921 -9.86114 -9.56952 -9.15239 -8.99369 -7.75589 -7.43821 -6.96443 -6.79856 -4.44846 2.62758 2.87476 3.04891 3.08730 3.19141 3.87218 4.20342 4.42994 4.66777 4.87940 5.19027 5.28940 5.43397 5.58506 5.60104 5.65453 5.70028 5.84238 5.87323 5.94012 5.95910 6.12407 6.15791 6.23738 6.38714 6.44983 6.51385 6.68136 6.79890 6.91749 7.01593 7.14939 7.18456 7.46503 7.59876 7.70735 7.80441 7.88861 8.00083 8.36578 8.40268 8.68228 8.76285 9.18177 10.03883 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.009846 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.514630 B = 2843.119189 C = 4884.835296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.322 6.322 3 C 0.134 3.866 4 C -0.321 4.321 5 C -0.076 4.076 6 C -0.180 4.180 7 C 0.127 3.873 8 C -0.434 4.434 9 H 0.089 0.911 10 C 0.077 3.923 11 N -0.781 5.781 12 Si 0.907 3.093 13 H -0.260 1.260 14 H -0.278 1.278 15 H -0.262 1.262 16 C -0.064 4.064 17 O -0.304 6.304 18 C 0.066 3.934 19 H 0.044 0.956 20 C -0.116 4.116 21 C -0.152 4.152 22 C 0.054 3.946 23 N -0.683 5.683 24 C 0.032 3.968 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.284 0.716 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.335 0.665 39 H 0.110 0.890 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -6.573 -2.239 7.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.236 6.236 3 C 0.089 3.911 4 C -0.341 4.341 5 C -0.095 4.095 6 C -0.199 4.199 7 C 0.124 3.876 8 C -0.463 4.463 9 H 0.107 0.893 10 C -0.143 4.143 11 N -0.405 5.405 12 Si 0.731 3.269 13 H -0.184 1.184 14 H -0.203 1.203 15 H -0.187 1.187 16 C -0.110 4.110 17 O -0.219 6.219 18 C 0.008 3.992 19 H 0.063 0.937 20 C -0.153 4.153 21 C -0.191 4.191 22 C -0.076 4.076 23 N -0.312 5.312 24 C -0.097 4.097 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.152 0.848 39 H 0.128 0.872 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.739 -6.491 -2.147 6.877 hybrid contribution -0.716 0.192 -0.049 0.743 sum -1.456 -6.299 -2.196 6.828 Atomic orbital electron populations 1.22784 0.80872 1.01856 1.00612 1.86068 1.19355 1.28582 1.89585 1.19210 0.91366 0.83143 0.97360 1.20284 0.97248 0.92289 1.24255 1.20217 0.95061 0.95064 0.99160 1.20938 0.92017 0.98933 1.08040 1.17620 0.93690 0.89060 0.87230 1.19510 0.91487 1.01700 1.33573 0.89313 1.25977 1.00826 0.94934 0.92553 1.69843 1.38695 1.11013 1.20931 0.86353 0.81778 0.78699 0.80064 1.18422 1.20280 1.18683 1.17882 0.84799 0.86358 1.21954 1.86050 1.70499 1.39400 1.25944 1.22898 0.96445 0.92301 0.87595 0.93736 1.21604 1.01734 0.95215 0.96797 1.22267 0.99013 1.00332 0.97527 1.22039 0.96089 0.88424 1.01038 1.60787 1.51851 1.10093 1.08511 1.22945 0.95340 1.02089 0.89336 0.89906 0.93575 0.93706 0.88544 0.89088 0.86080 0.90506 0.91603 0.91834 0.91711 0.92299 0.91149 0.91390 0.84783 0.87245 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.81 101.05 0.99 1.54 16 2 O -0.32 -6.94 10.28 -34.32 -0.35 -7.30 16 3 C 0.13 3.19 6.69 -39.17 -0.26 2.93 16 4 C -0.32 -7.24 9.05 -39.21 -0.35 -7.60 16 5 C -0.08 -1.76 9.96 -40.02 -0.40 -2.16 16 6 C -0.18 -4.54 8.64 -39.26 -0.34 -4.88 16 7 C 0.13 3.31 5.56 -106.70 -0.59 2.72 16 8 C -0.43 -10.94 5.87 -37.84 -0.22 -11.16 16 9 H 0.09 2.24 7.15 -52.48 -0.38 1.87 16 10 C 0.08 1.83 5.13 -17.33 -0.09 1.74 16 11 N -0.78 -19.01 10.99 55.55 0.61 -18.40 16 12 Si 0.91 18.22 29.59 -169.99 -5.03 13.19 16 13 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 15 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 16 C -0.06 -1.63 5.61 -38.22 -0.21 -1.84 16 17 O -0.30 -7.32 8.86 -33.47 -0.30 -7.61 16 18 C 0.07 1.35 2.82 -26.66 -0.08 1.28 16 19 H 0.04 0.97 7.91 -51.93 -0.41 0.56 16 20 C -0.12 -1.97 5.65 -26.61 -0.15 -2.12 16 21 C -0.15 -2.10 6.08 -26.65 -0.16 -2.26 16 22 C 0.05 0.76 6.55 -3.84 -0.03 0.74 16 23 N -0.68 -11.59 6.87 -113.82 -0.78 -12.37 16 24 C 0.03 0.64 5.01 -3.83 -0.02 0.62 16 25 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 26 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 27 H 0.04 0.68 7.66 -51.93 -0.40 0.28 16 28 H 0.10 1.91 6.27 -52.49 -0.33 1.58 16 29 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.12 3.10 6.19 -52.49 -0.32 2.78 16 31 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.34 5.41 8.86 -39.29 -0.35 5.06 16 39 H 0.11 2.54 5.83 -51.93 -0.30 2.24 16 40 H 0.07 1.45 8.13 -51.93 -0.42 1.02 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -27.27 319.34 -8.78 -36.05 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.82 Total: 12.10 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -1.91 Total: -20.47 kcal Atomic # 7 Polarization: -30.60 SS G_CDS: -0.17 Total: -30.77 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.65 Total: -14.91 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.27 -8.78 -36.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218280213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.136 kcal (2) G-P(sol) polarization free energy of solvation -27.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds