Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36012 * 116.99543 * 2 1 4 4 C 1.38711 * 120.02392 * 0.02562 * 3 2 1 5 5 C 1.38767 * 120.53705 * 180.02562 * 4 3 2 6 6 C 1.36490 * 120.58287 * 0.02562 * 5 4 3 7 7 C 1.40768 * 120.02112 * 359.97438 * 6 5 4 8 8 C 1.41183 * 120.26084 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99566 * 154.99804 * 8 7 6 10 10 C 1.39913 * 120.00074 * 334.99776 * 8 7 6 11 11 N 1.30874 * 120.00209 * 342.14711 * 10 8 7 12 12 Si 1.86798 * 119.99950 * 162.15154 * 10 8 7 13 13 H 1.48509 * 109.47389 * 60.00058 * 12 10 8 14 14 H 1.48507 * 109.47438 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47294 * 299.99950 * 12 10 8 16 16 C 1.38881 * 120.01938 * 180.02562 * 3 2 1 17 17 O 1.35741 * 120.28264 * 359.97438 * 16 3 2 18 18 C 1.42904 * 116.99911 * 90.00568 * 17 16 3 19 19 H 1.09000 * 109.49872 * 329.99917 * 18 17 16 20 20 C 1.53109 * 109.50481 * 209.91912 * 18 17 16 21 21 C 1.53117 * 109.16276 * 182.40452 * 20 18 17 22 22 C 1.53034 * 109.28036 * 57.65057 * 21 20 18 23 23 N 1.46840 * 109.52479 * 300.82464 * 22 21 20 24 24 C 1.46854 * 111.23348 * 61.71875 * 23 22 21 25 25 H 1.09007 * 109.46567 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47264 * 299.99395 * 1 2 3 27 27 H 1.09001 * 109.47844 * 60.00254 * 1 2 3 28 28 H 1.07999 * 119.72588 * 0.04254 * 4 3 2 29 29 H 1.08004 * 119.70850 * 179.72393 * 5 4 3 30 30 H 1.07996 * 119.99019 * 179.97438 * 6 5 4 31 31 H 0.97004 * 120.00092 * 179.97438 * 11 10 8 32 32 H 1.09006 * 109.52336 * 302.30912 * 20 18 17 33 33 H 1.09002 * 109.52643 * 62.43185 * 20 18 17 34 34 H 1.09002 * 109.50724 * 177.59876 * 21 20 18 35 35 H 1.09004 * 109.50156 * 297.66990 * 21 20 18 36 36 H 1.09003 * 109.46162 * 60.83912 * 22 21 20 37 37 H 1.08996 * 109.46720 * 180.80452 * 22 21 20 38 38 H 1.00901 * 110.99987 * 297.64600 * 23 22 21 39 39 H 1.09003 * 109.49471 * 178.28221 * 24 23 22 40 40 H 1.09002 * 109.42958 * 58.31650 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2913 2.3755 0.0005 5 6 1.9101 3.6176 0.0000 6 6 3.2715 3.7152 -0.0016 7 6 4.0611 2.5498 -0.0021 8 6 5.4698 2.6449 -0.0032 9 1 6.0659 1.8355 0.3917 10 6 6.0934 3.7876 -0.5159 11 7 5.4295 4.6004 -1.2978 12 14 7.8737 4.1531 -0.0843 13 1 8.7350 3.0358 -0.5482 14 1 8.2960 5.4119 -0.7495 15 1 8.0059 4.3020 1.3872 16 6 3.4332 1.2852 -0.0005 17 8 4.1786 0.1507 -0.0005 18 6 4.5345 -0.3917 -1.2738 19 1 3.7602 -0.1494 -2.0018 20 6 4.6724 -1.9124 -1.1612 21 6 5.1121 -2.4788 -2.5141 22 6 6.4295 -1.8222 -2.9327 23 7 6.2452 -0.3685 -3.0270 24 6 5.8682 0.2052 -1.7287 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8900 28 1 0.2130 2.3142 0.0017 29 1 1.3091 4.5150 -0.0041 30 1 3.7430 4.6867 -0.0024 31 1 5.8618 5.3929 -1.6529 32 1 5.4186 -2.1555 -0.4047 33 1 3.7128 -2.3453 -0.8785 34 1 5.2533 -3.5562 -2.4291 35 1 4.3470 -2.2700 -3.2620 36 1 7.1973 -2.0436 -2.1912 37 1 6.7381 -2.2128 -3.9023 38 1 5.5657 -0.1354 -3.7356 39 1 5.7687 1.2864 -1.8239 40 1 6.6389 -0.0251 -0.9931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218280213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = -80.918821 kcal Electronic energy + Delta-G solvation = -22625.188402 eV Core-core repulsion = 19404.061157 eV Total energy + Delta-G solvation = -3221.127245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.02077 -39.79495 -38.31221 -37.13837 -35.33963 -32.62473 -31.43666 -31.05762 -29.82352 -28.04118 -26.85582 -24.52676 -23.88692 -22.61412 -22.23556 -21.34988 -19.64228 -18.36305 -17.56079 -17.25415 -16.98047 -16.54367 -16.46793 -16.01152 -15.55582 -15.51254 -15.25476 -14.75405 -14.47449 -13.93560 -13.68537 -13.55330 -13.40607 -13.09404 -12.96674 -12.74372 -12.56102 -12.40654 -12.21100 -12.15336 -12.02432 -11.74851 -11.71006 -11.57211 -11.27292 -10.94267 -10.71023 -9.37637 -9.14370 -8.76687 -8.60852 -6.34248 0.81352 1.04209 1.39149 1.48245 1.53579 2.19343 2.62217 2.69302 3.03606 3.47169 3.68261 3.96213 4.00152 4.13944 4.22989 4.30072 4.32291 4.42898 4.49645 4.56585 4.58630 4.67739 4.76047 4.93707 4.98467 4.99847 5.04683 5.07887 5.08406 5.22908 5.26269 5.34837 5.48233 5.74508 5.90455 5.99509 6.09741 6.11789 6.46133 6.50382 6.65882 6.80832 6.90143 7.36028 8.25775 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.009846 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.514630 B = 2843.119189 C = 4884.835296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C 0.125 3.875 4 C -0.319 4.319 5 C -0.077 4.077 6 C -0.205 4.205 7 C 0.101 3.899 8 C -0.452 4.452 9 H 0.075 0.925 10 C 0.045 3.955 11 N -0.805 5.805 12 Si 0.969 3.031 13 H -0.261 1.261 14 H -0.264 1.264 15 H -0.261 1.261 16 C -0.087 4.087 17 O -0.323 6.323 18 C 0.068 3.932 19 H 0.025 0.975 20 C -0.110 4.110 21 C -0.142 4.142 22 C 0.053 3.947 23 N -0.687 5.687 24 C 0.048 3.952 25 H 0.117 0.883 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.292 0.708 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.340 0.660 39 H 0.072 0.928 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -7.849 -2.907 8.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.253 6.253 3 C 0.080 3.920 4 C -0.339 4.339 5 C -0.095 4.095 6 C -0.225 4.225 7 C 0.098 3.902 8 C -0.480 4.480 9 H 0.093 0.907 10 C -0.172 4.172 11 N -0.430 5.430 12 Si 0.790 3.210 13 H -0.185 1.185 14 H -0.188 1.188 15 H -0.186 1.186 16 C -0.132 4.132 17 O -0.239 6.239 18 C 0.010 3.990 19 H 0.043 0.957 20 C -0.148 4.148 21 C -0.181 4.181 22 C -0.076 4.076 23 N -0.317 5.317 24 C -0.082 4.082 25 H 0.135 0.865 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.157 0.843 39 H 0.091 0.909 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.058 -7.778 -2.825 8.343 hybrid contribution -0.753 0.491 0.133 0.908 sum -1.811 -7.288 -2.693 7.977 Atomic orbital electron populations 1.23161 0.77824 1.04523 1.01469 1.86033 1.22473 1.27530 1.89304 1.19337 0.91264 0.84466 0.96889 1.20618 0.98787 0.91551 1.22923 1.20534 0.94551 0.96576 0.97875 1.20941 0.93126 0.98252 1.10147 1.17945 0.94435 0.89852 0.87972 1.19488 0.91451 1.02324 1.34726 0.90662 1.26632 1.04414 0.94258 0.91918 1.69871 1.40332 1.11465 1.21299 0.85427 0.77014 0.78804 0.79739 1.18543 1.18797 1.18565 1.18157 0.85978 0.86532 1.22574 1.85966 1.70698 1.39131 1.28057 1.23020 0.95716 0.94532 0.85759 0.95712 1.21608 1.01744 0.92394 0.99075 1.22219 0.98665 1.01910 0.95269 1.22182 0.96322 0.86285 1.02831 1.60744 1.51714 1.12381 1.06815 1.22554 0.94813 1.00131 0.90670 0.86512 0.92603 0.92786 0.85442 0.86317 0.87212 0.89751 0.91683 0.92111 0.88542 0.91895 0.91127 0.88326 0.84290 0.90934 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.81 113.37 1.11 1.84 16 2 O -0.34 -14.37 10.28 -79.78 -0.82 -15.19 16 3 C 0.13 6.02 6.69 22.54 0.15 6.17 16 4 C -0.32 -14.13 9.05 22.51 0.20 -13.92 16 5 C -0.08 -3.54 9.96 21.99 0.22 -3.33 16 6 C -0.21 -10.68 8.64 22.48 0.19 -10.48 16 7 C 0.10 5.50 5.56 -21.21 -0.12 5.38 16 8 C -0.45 -23.88 5.87 23.40 0.14 -23.74 16 9 H 0.08 4.04 7.15 -2.91 -0.02 4.02 16 10 C 0.05 2.22 5.13 85.24 0.44 2.66 16 11 N -0.81 -40.33 10.99 21.82 0.24 -40.09 16 12 Si 0.97 38.04 29.59 68.60 2.03 40.07 16 13 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 14 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 16 C -0.09 -4.56 5.61 23.15 0.13 -4.43 16 17 O -0.32 -16.15 8.86 -76.75 -0.68 -16.83 16 18 C 0.07 2.85 2.82 30.64 0.09 2.93 16 19 H 0.02 1.12 7.91 -2.39 -0.02 1.10 16 20 C -0.11 -3.68 5.65 30.67 0.17 -3.50 16 21 C -0.14 -3.54 6.08 30.64 0.19 -3.36 16 22 C 0.05 1.37 6.55 86.33 0.57 1.93 16 23 N -0.69 -22.94 6.87 -514.01 -3.53 -26.47 16 24 C 0.05 1.99 5.01 86.32 0.43 2.42 16 25 H 0.12 2.62 8.14 -2.38 -0.02 2.60 16 26 H 0.06 1.54 7.66 -2.39 -0.02 1.52 16 27 H 0.05 1.49 7.66 -2.39 -0.02 1.48 16 28 H 0.13 4.74 6.27 -2.91 -0.02 4.72 16 29 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.11 5.85 6.19 -2.91 -0.02 5.83 16 31 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 32 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.34 10.82 8.86 -89.69 -0.79 10.03 16 39 H 0.07 3.56 5.83 -2.39 -0.01 3.55 16 40 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 Total: -1.00 -61.37 319.34 1.40 -59.96 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: 0.25 Total: 37.96 kcal Atomic # 6 Polarization: -43.32 SS G_CDS: 3.91 Total: -39.41 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -3.29 Total: -66.56 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.50 Total: -32.02 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -61.37 1.40 -59.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218280213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.954 kcal (2) G-P(sol) polarization free energy of solvation -61.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds