Wall clock time and date at job start Mon Mar 30 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36010 * 117.00214 * 2 1 4 4 C 1.38709 * 120.02190 * 0.23826 * 3 2 1 5 5 C 1.38766 * 120.53758 * 180.27961 * 4 3 2 6 6 C 1.36492 * 120.57902 * 359.73516 * 5 4 3 7 7 C 1.40762 * 120.02621 * 0.02562 * 6 5 4 8 8 C 1.41181 * 120.26903 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99964 * 155.33891 * 8 7 6 10 10 C 1.39922 * 119.99849 * 335.33491 * 8 7 6 11 11 N 1.30867 * 119.99842 * 162.63596 * 10 8 7 12 12 Si 1.86801 * 120.00089 * 342.64441 * 10 8 7 13 13 H 1.48498 * 109.47538 * 94.95905 * 12 10 8 14 14 H 1.48500 * 109.47045 * 214.96247 * 12 10 8 15 15 H 1.48496 * 109.46882 * 334.95633 * 12 10 8 16 16 C 1.38872 * 120.02210 * 179.97438 * 3 2 1 17 17 O 1.35752 * 120.28484 * 0.02562 * 16 3 2 18 18 C 1.42898 * 117.00025 * 276.69855 * 17 16 3 19 19 H 1.09007 * 109.50440 * 29.56131 * 18 17 16 20 20 C 1.53115 * 109.50480 * 149.64497 * 18 17 16 21 21 C 1.53122 * 109.16000 * 177.63579 * 20 18 17 22 22 C 1.53041 * 109.27787 * 302.34536 * 21 20 18 23 23 N 1.46844 * 109.52520 * 59.17823 * 22 21 20 24 24 C 1.46847 * 111.19961 * 298.26132 * 23 22 21 25 25 H 1.08999 * 109.47599 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47122 * 299.99786 * 1 2 3 27 27 H 1.09000 * 109.47152 * 59.99837 * 1 2 3 28 28 H 1.08000 * 119.72687 * 359.97438 * 4 3 2 29 29 H 1.07993 * 119.71347 * 179.76339 * 5 4 3 30 30 H 1.08004 * 119.98727 * 179.97438 * 6 5 4 31 31 H 0.97001 * 119.99950 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.52223 * 297.53458 * 20 18 17 33 33 H 1.08995 * 109.52411 * 57.66731 * 20 18 17 34 34 H 1.08993 * 109.50346 * 62.28373 * 21 20 18 35 35 H 1.09001 * 109.50453 * 182.40977 * 21 20 18 36 36 H 1.09000 * 109.46310 * 179.19678 * 22 21 20 37 37 H 1.09005 * 109.46218 * 299.17366 * 22 21 20 38 38 H 1.00904 * 111.00115 * 62.35422 * 23 22 21 39 39 H 1.09003 * 109.46179 * 301.72068 * 24 23 22 40 40 H 1.08999 * 109.46558 * 181.75375 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2915 2.3755 0.0050 5 6 1.9104 3.6175 -0.0008 6 6 3.2718 3.7149 -0.0060 7 6 4.0614 2.5496 -0.0062 8 6 5.4700 2.6444 -0.0111 9 1 6.0671 1.8334 0.3789 10 6 6.0923 3.7890 -0.5213 11 7 7.3433 4.0388 -0.2294 12 14 5.1375 4.9607 -1.6189 13 1 4.5765 6.0629 -0.7969 14 1 6.0458 5.5247 -2.6494 15 1 4.0311 4.2260 -2.2830 16 6 3.4333 1.2850 0.0005 17 8 4.1787 0.1504 0.0005 18 6 4.4103 -0.4736 1.2650 19 1 3.5716 -0.2695 1.9307 20 6 4.5525 -1.9857 1.0705 21 6 4.8589 -2.6395 2.4207 22 6 6.1331 -2.0233 3.0029 23 7 5.9462 -0.5765 3.1706 24 6 5.6975 0.0798 1.8807 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2133 2.3142 0.0085 29 1 1.3096 4.5149 -0.0007 30 1 3.7434 4.6865 -0.0109 31 1 7.7747 4.8325 -0.5827 32 1 3.6221 -2.3908 0.6725 33 1 5.3656 -2.1885 0.3736 34 1 4.0273 -2.4695 3.1044 35 1 5.0036 -3.7109 2.2818 36 1 6.3462 -2.4766 3.9710 37 1 6.9671 -2.2055 2.3251 38 1 5.2033 -0.3812 3.8248 39 1 6.5336 -0.1123 1.2082 40 1 5.5942 1.1541 2.0337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218280238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:52 Heat of formation + Delta-G solvation = -58.814551 kcal Electronic energy + Delta-G solvation = -22560.621195 eV Core-core repulsion = 19340.452463 eV Total energy + Delta-G solvation = -3220.168732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.51871 -38.40040 -36.84529 -35.60202 -33.56835 -31.33811 -30.19236 -29.83656 -28.40181 -26.67277 -24.97604 -23.26321 -22.54023 -21.25211 -20.53903 -19.99984 -17.99534 -17.06395 -15.92645 -15.66322 -15.59451 -15.15493 -14.99410 -14.61758 -14.38572 -14.17238 -13.67954 -13.32494 -12.86868 -12.63618 -12.38983 -12.20377 -11.87736 -11.76883 -11.49602 -11.48613 -10.99211 -10.92060 -10.90694 -10.72506 -10.55064 -10.25214 -10.00288 -9.79170 -9.64085 -9.40867 -8.98257 -7.89746 -7.64014 -7.09375 -7.05938 -4.56631 2.40180 2.60061 3.05871 3.17993 3.29303 3.91383 4.02171 4.28122 4.54131 4.78759 5.11805 5.21382 5.30725 5.44977 5.47917 5.54157 5.56002 5.73749 5.78891 5.81306 5.87263 5.91375 6.05395 6.13615 6.21625 6.31010 6.36554 6.43263 6.57360 6.62231 6.76005 6.86187 7.05184 7.33829 7.38385 7.49096 7.58821 7.70044 7.74054 8.19438 8.23029 8.41001 8.67076 9.00659 9.92695 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.008385 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.240836 B = 3338.428920 C = 4967.390841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.319 6.319 3 C 0.143 3.857 4 C -0.329 4.329 5 C -0.045 4.045 6 C -0.259 4.259 7 C 0.103 3.897 8 C -0.416 4.416 9 H 0.109 0.891 10 C 0.082 3.918 11 N -0.790 5.790 12 Si 0.918 3.082 13 H -0.271 1.271 14 H -0.293 1.293 15 H -0.241 1.241 16 C -0.051 4.051 17 O -0.297 6.297 18 C 0.061 3.939 19 H 0.047 0.953 20 C -0.115 4.115 21 C -0.152 4.152 22 C 0.054 3.946 23 N -0.681 5.681 24 C 0.034 3.966 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.289 0.711 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.335 0.665 39 H 0.078 0.922 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 -6.642 3.180 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.233 6.233 3 C 0.098 3.902 4 C -0.349 4.349 5 C -0.063 4.063 6 C -0.278 4.278 7 C 0.099 3.901 8 C -0.443 4.443 9 H 0.127 0.873 10 C -0.139 4.139 11 N -0.412 5.412 12 Si 0.745 3.255 13 H -0.198 1.198 14 H -0.221 1.221 15 H -0.164 1.164 16 C -0.097 4.097 17 O -0.212 6.212 18 C 0.003 3.997 19 H 0.065 0.935 20 C -0.153 4.153 21 C -0.191 4.191 22 C -0.076 4.076 23 N -0.310 5.310 24 C -0.095 4.095 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.152 0.848 39 H 0.096 0.904 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.188 -6.664 3.009 8.965 hybrid contribution -1.691 0.611 -0.437 1.850 sum -6.879 -6.053 2.573 9.517 Atomic orbital electron populations 1.22823 0.80522 1.02125 1.00745 1.86075 1.19649 1.28283 1.89312 1.19284 0.91465 0.83333 0.96115 1.20265 0.97573 0.92001 1.25013 1.20102 0.94332 0.95578 0.96319 1.20549 0.93559 0.97136 1.16523 1.17673 0.93791 0.89435 0.89200 1.19708 0.90372 1.02316 1.31897 0.87345 1.26298 0.95081 0.97391 0.95177 1.69693 1.12437 1.24974 1.34083 0.86251 0.79920 0.79661 0.79641 1.19759 1.22055 1.16411 1.17874 0.84806 0.85746 1.21250 1.86105 1.70882 1.37702 1.26548 1.22978 0.96953 0.92280 0.87494 0.93531 1.21588 1.02326 0.94477 0.96889 1.22271 0.99284 1.00282 0.97299 1.22056 0.96709 0.88328 1.00516 1.60752 1.49319 1.09314 1.11634 1.22821 0.97054 1.00208 0.89430 0.89681 0.93550 0.93403 0.88000 0.88546 0.87977 0.90079 0.91660 0.91366 0.92281 0.91527 0.91200 0.90929 0.84819 0.90361 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.32 -6.47 10.28 -34.31 -0.35 -6.83 16 3 C 0.14 3.23 6.69 -39.17 -0.26 2.97 16 4 C -0.33 -6.94 9.05 -39.21 -0.35 -7.29 16 5 C -0.04 -0.97 9.96 -40.02 -0.40 -1.37 16 6 C -0.26 -6.18 7.02 -39.26 -0.28 -6.45 16 7 C 0.10 2.61 5.26 -106.70 -0.56 2.05 16 8 C -0.42 -10.94 8.54 -37.84 -0.32 -11.26 16 9 H 0.11 2.93 4.93 -52.49 -0.26 2.68 16 10 C 0.08 2.09 5.44 -17.33 -0.09 1.99 16 11 N -0.79 -20.29 13.93 55.55 0.77 -19.52 16 12 Si 0.92 20.54 24.37 -169.99 -4.14 16.40 16 13 H -0.27 -5.83 6.67 56.52 0.38 -5.46 16 14 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.24 -5.60 6.65 56.52 0.38 -5.22 16 16 C -0.05 -1.25 5.61 -38.22 -0.21 -1.46 16 17 O -0.30 -7.02 8.85 -33.50 -0.30 -7.32 16 18 C 0.06 1.20 2.82 -26.65 -0.08 1.13 16 19 H 0.05 0.95 7.90 -51.93 -0.41 0.54 16 20 C -0.12 -1.89 5.65 -26.61 -0.15 -2.04 16 21 C -0.15 -2.00 6.08 -26.65 -0.16 -2.16 16 22 C 0.05 0.73 6.55 -3.83 -0.03 0.70 16 23 N -0.68 -11.03 6.87 -113.81 -0.78 -11.81 16 24 C 0.03 0.66 4.73 -3.83 -0.02 0.64 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 27 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.10 1.86 6.27 -52.49 -0.33 1.53 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.10 2.40 3.94 -52.48 -0.21 2.19 16 31 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.33 5.00 8.86 -39.29 -0.35 4.66 16 39 H 0.08 1.62 7.93 -51.93 -0.41 1.21 16 40 H 0.10 2.12 6.45 -51.93 -0.33 1.78 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -27.95 312.86 -7.67 -35.62 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.66 Total: 9.80 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -1.92 Total: -21.06 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: -0.01 Total: -31.33 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.65 Total: -14.14 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.14 Total: 16.40 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.95 -7.67 -35.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218280238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.198 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds