Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 117.00198 * 2 1 4 4 C 1.38762 * 120.05542 * 0.25887 * 3 2 1 5 5 C 1.38121 * 119.94133 * 180.31914 * 4 3 2 6 6 C 1.38284 * 120.05760 * 359.67490 * 5 4 3 7 7 C 1.38240 * 120.11206 * 0.03102 * 6 5 4 8 8 C 1.38170 * 120.05620 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02596 * 179.97438 * 8 7 6 10 10 O 1.42894 * 109.47334 * 0.02562 * 9 8 7 11 11 C 1.42901 * 114.00234 * 180.02562 * 10 9 8 12 12 C 1.53507 * 114.17301 * 149.99598 * 11 10 9 13 13 N 1.47489 * 87.92897 * 87.81628 * 12 11 10 14 14 C 1.46904 * 110.99948 * 138.70309 * 13 12 11 15 15 C 1.50696 * 109.46794 * 169.99650 * 14 13 12 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99717 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47481 * 87.83412 * 27.01215 * 13 12 11 24 24 H 1.08995 * 109.46761 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46524 * 299.99667 * 1 2 3 26 26 H 1.09000 * 109.47278 * 59.99486 * 1 2 3 27 27 H 1.08000 * 120.02649 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.96743 * 179.70301 * 5 4 3 29 29 H 1.08005 * 119.94413 * 180.02562 * 6 5 4 30 30 H 1.08007 * 119.97077 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.46674 * 239.99763 * 9 8 7 32 32 H 1.09001 * 109.46492 * 120.00215 * 9 8 7 33 33 H 1.09007 * 113.25096 * 17.04906 * 11 10 9 34 34 H 1.08997 * 113.47543 * 333.05437 * 12 11 10 35 35 H 1.08997 * 113.47777 * 202.57513 * 12 11 10 36 36 H 1.09005 * 109.47078 * 49.99935 * 14 13 12 37 37 H 1.09002 * 109.47005 * 290.00151 * 14 13 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 1.08990 * 113.47671 * 87.75950 * 23 13 12 40 40 H 1.09001 * 113.47203 * 218.22506 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3754 0.0054 5 6 1.9210 3.6048 -0.0013 6 6 3.3020 3.6757 -0.0065 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2848 -0.0003 9 6 4.2538 0.0221 -0.0001 10 8 5.6426 0.3584 -0.0055 11 6 6.5148 -0.7736 -0.0064 12 6 7.8567 -0.5326 -0.7118 13 7 8.3824 -0.0363 0.5738 14 6 9.7486 -0.5233 0.8071 15 6 10.3409 0.1919 1.9940 16 1 9.7604 0.9337 2.5224 17 6 11.6236 -0.1014 2.4059 18 7 12.1404 0.5224 3.4420 19 14 12.6274 -1.3849 1.4924 20 1 12.3934 -2.7201 2.0988 21 1 12.2171 -1.4105 0.0654 22 1 14.0697 -1.0443 1.5867 23 6 7.3923 -0.8973 1.2471 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2129 2.3204 0.0101 28 1 1.3341 4.5114 -0.0019 29 1 3.7923 4.6381 -0.0113 30 1 5.1345 2.5752 -0.0095 31 1 4.0182 -0.5651 -0.8877 32 1 4.0248 -0.5605 0.8922 33 1 6.0179 -1.6994 -0.2965 34 1 7.8090 0.2331 -1.4859 35 1 8.3385 -1.4488 -1.0531 36 1 10.3588 -0.3300 -0.0752 37 1 9.7236 -1.5951 1.0040 38 1 13.0426 0.3157 3.7320 39 1 7.7500 -1.9108 1.4284 40 1 6.9508 -0.4407 2.1330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222972730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = -7.270783 kcal Electronic energy + Delta-G solvation = -20814.785332 eV Core-core repulsion = 17596.851705 eV Total energy + Delta-G solvation = -3217.933626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40817 -39.59085 -37.64686 -36.40600 -32.78151 -31.92544 -30.22366 -29.59054 -27.61127 -26.13089 -25.47378 -25.06792 -22.23409 -21.54814 -21.24032 -19.43983 -18.18608 -16.76593 -16.67442 -16.27767 -16.09112 -15.63095 -15.29299 -15.08186 -14.45728 -14.31441 -13.94949 -13.77616 -13.62077 -13.09887 -12.78011 -12.41592 -12.29697 -12.16651 -12.13170 -11.51821 -11.43211 -11.31379 -11.06672 -10.87649 -10.73041 -10.45988 -9.92385 -9.73258 -9.31110 -9.29123 -8.84863 -8.54317 -8.25180 -7.88310 -6.01217 -3.98076 1.23045 1.34098 3.05645 3.28700 3.36568 3.38076 3.59913 3.66679 4.44129 4.59095 4.71473 4.81647 4.82706 4.85456 4.91906 5.04635 5.15418 5.23098 5.26374 5.29172 5.37344 5.39205 5.54703 5.72845 5.76322 5.88003 5.94092 6.05825 6.15743 6.21477 6.29916 6.38734 6.50377 6.57104 6.73412 6.74907 7.19263 7.38498 7.47152 7.75018 7.91769 8.68769 9.10843 9.60118 11.12372 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.003201 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.333513 B = 8744.312246 C = 9208.734822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.156 4.156 7 C -0.054 4.054 8 C -0.115 4.115 9 C 0.112 3.888 10 O -0.347 6.347 11 C 0.058 3.942 12 C -0.011 4.011 13 N -0.443 5.443 14 C 0.125 3.875 15 C -0.504 4.504 16 H 0.080 0.920 17 C 0.066 3.934 18 N -0.901 5.901 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.268 1.268 22 H -0.285 1.285 23 C -0.009 4.009 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.146 0.854 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.027 0.973 37 H -0.005 1.005 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.427 -0.823 -9.451 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.081 3.919 4 C -0.230 4.230 5 C -0.104 4.104 6 C -0.175 4.175 7 C -0.072 4.072 8 C -0.116 4.116 9 C 0.035 3.965 10 O -0.265 6.265 11 C 0.000 4.000 12 C -0.140 4.140 13 N -0.165 5.165 14 C -0.003 4.003 15 C -0.542 4.542 16 H 0.099 0.901 17 C -0.135 4.135 18 N -0.540 5.540 19 Si 0.703 3.297 20 H -0.203 1.203 21 H -0.193 1.193 22 H -0.211 1.211 23 C -0.139 4.139 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.164 0.836 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.012 0.988 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.032 -0.090 -9.189 25.729 hybrid contribution 0.415 -1.650 -0.452 1.761 sum -23.617 -1.740 -9.641 25.568 Atomic orbital electron populations 1.23037 0.78519 1.03846 1.01272 1.86064 1.21266 1.26938 1.88789 1.18710 0.91200 0.84351 0.97590 1.21103 0.99685 0.92271 1.09967 1.20941 0.94805 0.96811 0.97802 1.21158 0.93759 0.98780 1.03767 1.21063 1.01450 0.90319 0.94369 1.19063 0.89816 0.95846 1.06883 1.21008 0.81307 0.93509 1.00659 1.87916 1.14131 1.29966 1.94507 1.23241 0.90264 0.88343 0.98196 1.24099 0.93102 0.99975 0.96833 1.68996 1.03373 1.42709 1.01471 1.20765 0.87451 0.93772 0.98265 1.20984 0.99131 1.22592 1.11479 0.90144 1.24939 0.97493 0.96173 0.94922 1.69902 1.15991 1.42429 1.25718 0.86859 0.79815 0.82212 0.80836 1.20348 1.19263 1.21098 1.24255 0.94140 0.97250 0.98211 0.88307 0.92679 0.92746 0.85599 0.85978 0.85674 0.83613 0.92207 0.92006 0.90869 0.89770 0.91305 0.95487 0.98769 0.92707 0.91202 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.41 9.92 -19.43 -0.19 -3.60 16 3 C 0.13 1.50 6.66 -39.22 -0.26 1.24 16 4 C -0.21 -2.14 9.04 -39.43 -0.36 -2.50 16 5 C -0.09 -0.86 10.04 -39.61 -0.40 -1.25 16 6 C -0.16 -1.78 10.04 -39.56 -0.40 -2.18 16 7 C -0.05 -0.73 9.37 -39.61 -0.37 -1.10 16 8 C -0.12 -1.55 5.89 -104.47 -0.62 -2.16 16 9 C 0.11 1.50 5.64 36.01 0.20 1.70 16 10 O -0.35 -5.59 8.88 -35.23 -0.31 -5.90 16 11 C 0.06 0.91 4.65 -26.20 -0.12 0.79 16 12 C -0.01 -0.18 7.52 -7.54 -0.06 -0.24 16 13 N -0.44 -9.83 6.32 -246.10 -1.55 -11.39 16 14 C 0.12 3.13 3.64 -4.98 -0.02 3.11 16 15 C -0.50 -14.98 9.94 -34.44 -0.34 -15.32 16 16 H 0.08 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -28.36 13.96 55.43 0.77 -27.58 16 19 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.01 -0.17 7.56 -7.54 -0.06 -0.23 16 24 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 26 H 0.05 0.29 7.67 -51.93 -0.40 -0.10 16 27 H 0.13 0.95 6.30 -52.49 -0.33 0.61 16 28 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.15 2.13 7.01 -52.48 -0.37 1.77 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 36 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 37 H -0.01 -0.13 6.73 -51.93 -0.35 -0.48 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.07 1.25 7.42 -51.93 -0.39 0.87 16 40 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -33.73 331.48 -8.83 -42.55 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.97 Total: -1.16 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.90 Total: -15.09 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.78 Total: -38.97 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.51 Total: -9.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.73 -8.83 -42.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222972730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.282 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds