Wall clock time and date at job start Mon Mar 30 2020 01:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47021 * 2 1 4 4 C 1.35998 * 116.99988 * 179.97438 * 3 2 1 5 5 C 1.38568 * 120.07611 * 0.28260 * 4 3 2 6 6 C 1.38236 * 120.00039 * 180.27541 * 5 4 3 7 7 C 1.38252 * 120.14685 * 359.71429 * 6 5 4 8 8 C 1.38239 * 120.14577 * 0.02562 * 7 6 5 9 9 C 1.38565 * 120.00082 * 359.97438 * 8 7 6 10 10 O 1.35987 * 120.07132 * 180.02562 * 9 8 7 11 11 C 1.42902 * 117.00217 * 5.31334 * 10 9 8 12 12 H 1.09000 * 110.88555 * 38.41749 * 11 10 9 13 13 C 1.55160 * 111.00653 * 162.33932 * 11 10 9 14 14 C 1.54331 * 103.02100 * 153.38320 * 13 11 10 15 15 N 1.47017 * 107.26710 * 338.13817 * 14 13 11 16 16 C 1.36935 * 125.64966 * 178.85057 * 15 14 13 17 17 H 1.07999 * 120.00145 * 179.69627 * 16 15 14 18 18 C 1.38809 * 119.99935 * 359.69655 * 16 15 14 19 19 N 1.31621 * 119.99958 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00114 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47149 * 269.99676 * 20 18 16 22 22 H 1.48500 * 109.46941 * 29.99910 * 20 18 16 23 23 H 1.48505 * 109.46968 * 149.99464 * 20 18 16 24 24 C 1.47429 * 108.70286 * 358.58671 * 15 14 13 25 25 H 1.08997 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46872 * 300.00321 * 1 2 3 27 27 H 1.09005 * 109.46841 * 60.00269 * 1 2 3 28 28 H 1.08998 * 109.47446 * 240.00168 * 2 1 3 29 29 H 1.09004 * 109.47335 * 119.99919 * 2 1 3 30 30 H 1.08005 * 119.99671 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.92746 * 179.70395 * 6 5 4 32 32 H 1.08001 * 119.92508 * 179.97438 * 7 6 5 33 33 H 1.08002 * 119.99474 * 179.97438 * 8 7 6 34 34 H 1.09005 * 110.72114 * 271.94168 * 13 11 10 35 35 H 1.09001 * 110.71794 * 35.03197 * 13 11 10 36 36 H 1.09007 * 109.98824 * 218.66500 * 14 13 11 37 37 H 1.09001 * 109.78175 * 97.49898 * 14 13 11 38 38 H 0.97005 * 120.00065 * 180.02562 * 19 18 16 39 39 H 1.09000 * 110.36285 * 143.19074 * 24 15 14 40 40 H 1.08993 * 110.36759 * 265.40550 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.2001 0.4277 -0.0049 6 6 5.5703 0.6106 0.0015 7 6 6.1003 1.8875 0.0072 8 6 5.2624 2.9870 0.0072 9 6 3.8880 2.8107 0.0009 10 8 3.0624 3.8912 0.0003 11 6 3.6764 5.1768 -0.1115 12 1 4.5178 5.1467 -0.8037 13 6 2.6422 6.2519 -0.5383 14 6 3.2337 7.5535 0.0428 15 7 4.1432 7.1709 1.1327 16 6 4.8865 8.0346 1.8922 17 1 5.5238 7.6530 2.6761 18 6 4.8206 9.4006 1.6545 19 7 4.0443 9.8657 0.6988 20 14 5.8339 10.5789 2.6910 21 1 5.0451 10.9988 3.8769 22 1 7.0772 9.9011 3.1382 23 1 6.1851 11.7735 1.8817 24 6 4.1178 5.7039 1.2767 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7886 -0.5709 -0.0091 31 1 6.2283 -0.2458 0.0021 32 1 7.1714 2.0263 0.0125 33 1 5.6791 3.9834 0.0121 34 1 2.5714 6.3091 -1.6246 35 1 1.6661 6.0434 -0.1002 36 1 2.4346 8.1849 0.4313 37 1 3.7861 8.0856 -0.7316 38 1 3.9985 10.8202 0.5325 39 1 5.1109 5.3300 1.5261 40 1 3.3994 5.4102 2.0419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225212080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:51 Heat of formation + Delta-G solvation = -39.195945 kcal Electronic energy + Delta-G solvation = -21473.765862 eV Core-core repulsion = 18254.447857 eV Total energy + Delta-G solvation = -3219.318005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58099 -40.05030 -38.43922 -37.46713 -34.32179 -32.74292 -31.49421 -31.05150 -30.09113 -29.02095 -26.54541 -24.99689 -23.36480 -22.93569 -22.09728 -21.43284 -19.73233 -19.01633 -18.33612 -17.17464 -17.10017 -16.76771 -16.48942 -15.88399 -15.73184 -15.57248 -15.14665 -14.77667 -14.24410 -14.10616 -13.85388 -13.79612 -13.37132 -13.33601 -12.95572 -12.82638 -12.76604 -12.65648 -12.31482 -12.20557 -12.04802 -11.93171 -11.81171 -11.61890 -11.57273 -11.47183 -10.74951 -9.68417 -8.99842 -8.77106 -7.88766 -5.26804 0.33126 0.49218 1.46019 1.48492 1.57236 2.13643 2.30362 2.49344 2.78927 3.30015 3.59708 3.65795 3.85862 3.91493 3.99610 4.05865 4.09663 4.10482 4.24951 4.36600 4.45833 4.48020 4.53441 4.59224 4.75948 4.79584 4.90083 4.91878 4.96437 4.99060 5.21184 5.30366 5.38179 5.39614 5.55227 5.56940 5.67053 5.80854 6.10943 6.21778 6.68481 7.04146 7.68650 8.33308 9.21775 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026258 B = 0.003992 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.099291 B = 7012.752975 C = 7701.628417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.334 6.334 4 C 0.080 3.920 5 C -0.171 4.171 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.183 4.183 9 C 0.071 3.929 10 O -0.310 6.310 11 C 0.085 3.915 12 H 0.087 0.913 13 C -0.122 4.122 14 C 0.188 3.812 15 N -0.623 5.623 16 C -0.250 4.250 17 H 0.084 0.916 18 C -0.062 4.062 19 N -0.950 5.950 20 Si 0.984 3.016 21 H -0.286 1.286 22 H -0.267 1.267 23 H -0.291 1.291 24 C 0.120 3.880 25 H 0.105 0.895 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.015 0.985 37 H 0.026 0.974 38 H 0.250 0.750 39 H 0.051 0.949 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -22.919 -3.625 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.034 3.966 5 C -0.190 4.190 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.202 4.202 9 C 0.026 3.974 10 O -0.224 6.224 11 C 0.028 3.972 12 H 0.105 0.895 13 C -0.160 4.160 14 C 0.063 3.937 15 N -0.351 5.351 16 C -0.378 4.378 17 H 0.101 0.899 18 C -0.255 4.255 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.213 1.213 22 H -0.192 1.192 23 H -0.217 1.217 24 C -0.006 4.006 25 H 0.124 0.876 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.033 -22.569 -3.601 22.878 hybrid contribution 0.465 1.186 0.545 1.385 sum -0.568 -21.383 -3.056 21.608 Atomic orbital electron populations 1.21805 0.92020 1.04123 1.02769 1.23084 0.96675 0.80821 1.02427 1.86173 1.18344 1.31252 1.89171 1.18519 0.83704 0.91376 1.02972 1.21393 0.94215 0.97609 1.05758 1.21258 0.94392 0.97839 0.99767 1.21210 1.00643 0.91734 1.00232 1.21357 0.91246 1.01353 1.06231 1.18741 0.89944 0.85730 1.02958 1.86146 1.34847 1.13077 1.88331 1.23440 0.96488 0.80203 0.97072 0.89522 1.22831 0.98241 0.93177 1.01778 1.20937 0.91606 0.91739 0.89402 1.44634 1.50585 1.00893 1.38964 1.19463 1.18854 0.87921 1.11597 0.89862 1.25703 1.01246 0.98321 1.00240 1.70163 1.42822 1.12528 1.34309 0.85011 0.78355 0.78082 0.77443 1.21290 1.19178 1.21724 1.22032 0.98658 0.84657 0.95290 0.87627 0.92575 0.92327 0.90596 0.90872 0.82095 0.82161 0.83405 0.85345 0.88836 0.90843 0.96638 0.95567 0.94104 0.93124 0.96377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.04 0.79 5.46 71.98 0.39 1.18 16 3 O -0.33 -9.67 9.92 -79.66 -0.79 -10.46 16 4 C 0.08 2.31 6.70 22.57 0.15 2.46 16 5 C -0.17 -3.59 9.04 22.35 0.20 -3.39 16 6 C -0.11 -2.17 10.04 22.27 0.22 -1.94 16 7 C -0.12 -2.73 10.04 22.27 0.22 -2.51 16 8 C -0.18 -5.45 8.72 22.35 0.19 -5.25 16 9 C 0.07 2.40 6.65 22.57 0.15 2.55 16 10 O -0.31 -11.95 9.74 -79.54 -0.77 -12.72 16 11 C 0.09 3.35 2.82 31.99 0.09 3.44 16 12 H 0.09 3.24 6.62 -2.39 -0.02 3.22 16 13 C -0.12 -4.96 6.68 31.79 0.21 -4.75 16 14 C 0.19 9.68 5.37 86.73 0.47 10.15 16 15 N -0.62 -33.60 3.39 -691.98 -2.35 -35.95 16 16 C -0.25 -14.39 10.28 84.03 0.86 -13.53 16 17 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 18 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 19 N -0.95 -57.59 10.31 21.65 0.22 -57.37 16 20 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 C 0.12 5.39 6.60 86.85 0.57 5.96 16 25 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.08 1.05 7.65 -2.39 -0.02 1.04 16 29 H 0.07 1.06 7.67 -2.38 -0.02 1.04 16 30 H 0.16 2.25 6.30 -2.91 -0.02 2.23 16 31 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.13 4.02 5.31 -2.91 -0.02 4.00 16 34 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 35 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.02 0.88 7.52 -2.38 -0.02 0.86 16 37 H 0.03 1.46 7.37 -2.39 -0.02 1.44 16 38 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 39 H 0.05 2.17 7.24 -2.39 -0.02 2.15 16 40 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -70.82 325.21 4.31 -66.51 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.02 Total: 12.14 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.95 Total: -10.25 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -2.13 Total: -93.32 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.57 Total: -23.18 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -70.82 4.31 -66.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225212080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.314 kcal (2) G-P(sol) polarization free energy of solvation -70.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds