Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42897 * 109.47362 * 2 1 4 4 C 1.35995 * 117.00621 * 179.97438 * 3 2 1 5 5 C 1.38566 * 120.06833 * 359.95536 * 4 3 2 6 6 C 1.38244 * 119.99624 * 180.02562 * 5 4 3 7 7 C 1.38248 * 120.14857 * 0.02562 * 6 5 4 8 8 C 1.38242 * 120.14773 * 0.02562 * 7 6 5 9 9 C 1.38570 * 119.99566 * 359.97438 * 8 7 6 10 10 O 1.36000 * 120.07053 * 180.02562 * 9 8 7 11 11 C 1.42900 * 117.00085 * 6.19694 * 10 9 8 12 12 C 1.53931 * 113.73838 * 255.85521 * 11 10 9 13 13 N 1.48189 * 86.10457 * 221.95853 * 12 11 10 14 14 C 1.46895 * 111.07406 * 137.51841 * 13 12 11 15 15 C 1.50702 * 109.47197 * 70.56561 * 14 13 12 16 16 H 1.08006 * 119.99545 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00176 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00143 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47213 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46976 * 120.00149 * 19 17 15 22 22 H 1.48501 * 109.47527 * 240.00489 * 19 17 15 23 23 C 1.47966 * 90.79683 * 24.59637 * 13 12 11 24 24 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47496 * 299.99851 * 1 2 3 26 26 H 1.09002 * 109.47018 * 60.00674 * 1 2 3 27 27 H 1.08999 * 109.47504 * 239.99437 * 2 1 3 28 28 H 1.09005 * 109.47452 * 119.99560 * 2 1 3 29 29 H 1.07994 * 120.00260 * 0.04866 * 5 4 3 30 30 H 1.08003 * 119.92383 * 180.27320 * 6 5 4 31 31 H 1.07997 * 119.92873 * 180.02562 * 7 6 5 32 32 H 1.07996 * 120.00330 * 179.97438 * 8 7 6 33 33 H 1.09004 * 112.93771 * 27.42506 * 11 10 9 34 34 H 1.08999 * 113.75704 * 336.23860 * 12 11 10 35 35 H 1.09000 * 113.75847 * 107.60087 * 12 11 10 36 36 H 1.08998 * 109.47138 * 190.57062 * 14 13 12 37 37 H 1.09005 * 109.47005 * 310.56847 * 14 13 12 38 38 H 0.96993 * 119.99900 * 180.02562 * 18 17 15 39 39 H 1.08998 * 113.75583 * 221.08799 * 23 13 12 40 40 H 1.09001 * 113.75697 * 89.72369 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4277 0.0020 6 6 5.5703 0.6106 0.0031 7 6 6.1003 1.8875 0.0033 8 6 5.2624 2.9870 0.0029 9 6 3.8880 2.8106 0.0018 10 8 3.0623 3.8913 0.0009 11 6 3.6743 5.1753 -0.1363 12 6 3.7460 5.9713 1.1792 13 7 3.3503 7.1485 0.3707 14 6 2.3464 7.9586 1.0733 15 6 2.9915 8.6525 2.2453 16 1 4.0421 8.5059 2.4480 17 6 2.2405 9.4743 3.0585 18 7 0.9609 9.6524 2.8119 19 14 3.0399 10.3338 4.5116 20 1 4.4785 9.9703 4.5715 21 1 2.9076 11.8042 4.3509 22 1 2.3694 9.9107 5.7672 23 6 2.7133 6.2696 -0.6349 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7885 -0.5708 0.0019 30 1 6.2282 -0.2459 -0.0002 31 1 7.1713 2.0263 0.0037 32 1 5.6790 3.9834 0.0034 33 1 4.6186 5.1399 -0.6797 34 1 2.9989 5.6725 1.9146 35 1 4.7507 6.0411 1.5961 36 1 1.9375 8.7031 0.3903 37 1 1.5437 7.3132 1.4301 38 1 0.4327 10.2309 3.3838 39 1 2.8944 6.5773 -1.6647 40 1 1.6635 6.0582 -0.4313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225213112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -11.343024 kcal Electronic energy + Delta-G solvation = -21088.610388 eV Core-core repulsion = 17870.500176 eV Total energy + Delta-G solvation = -3218.110212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.60546 -39.37167 -37.72947 -36.40615 -32.86032 -32.01119 -30.33171 -29.61459 -28.69968 -25.77997 -25.16660 -24.15221 -22.48076 -22.16667 -20.93841 -19.30649 -18.74590 -17.39103 -16.47214 -16.24032 -16.15832 -15.27022 -15.08490 -14.84809 -14.70390 -14.32873 -13.88854 -13.48496 -13.30464 -12.79185 -12.75955 -12.41219 -12.09948 -11.99992 -11.96393 -11.74701 -11.69903 -11.21768 -10.98118 -10.89613 -10.86335 -10.64979 -10.26686 -10.10028 -9.69188 -9.15870 -8.75492 -8.50520 -7.87868 -7.74830 -6.05336 -4.07427 1.25027 1.43090 3.13020 3.30340 3.35911 3.37739 3.42933 3.71101 4.41567 4.65650 4.71998 4.74944 4.84266 4.88223 4.95677 4.99834 5.03712 5.14662 5.30967 5.31690 5.39982 5.43731 5.62791 5.65060 5.81036 5.89462 6.07061 6.12759 6.16537 6.24346 6.36908 6.42840 6.45387 6.61341 6.66934 7.18994 7.22696 7.60943 7.73703 7.85332 8.07764 8.38924 8.99684 9.57096 11.06033 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020547 B = 0.003758 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.417177 B = 7449.510790 C = 8057.500249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.303 6.303 4 C 0.095 3.905 5 C -0.176 4.176 6 C -0.127 4.127 7 C -0.116 4.116 8 C -0.174 4.174 9 C 0.112 3.888 10 O -0.294 6.294 11 C 0.042 3.958 12 C 0.008 3.992 13 N -0.474 5.474 14 C 0.162 3.838 15 C -0.511 4.511 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.009 3.991 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.002 0.998 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.271 -20.944 -7.082 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.217 6.217 4 C 0.049 3.951 5 C -0.195 4.195 6 C -0.145 4.145 7 C -0.135 4.135 8 C -0.193 4.193 9 C 0.066 3.934 10 O -0.206 6.206 11 C -0.015 4.015 12 C -0.122 4.122 13 N -0.198 5.198 14 C 0.036 3.964 15 C -0.550 4.550 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.120 4.120 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.157 0.843 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.204 -20.192 -7.191 22.057 hybrid contribution -0.097 -0.093 1.152 1.160 sum 5.107 -20.284 -6.039 21.772 Atomic orbital electron populations 1.21762 0.92763 1.02539 1.03873 1.22751 0.96007 0.82405 1.00922 1.86217 1.18158 1.28435 1.88934 1.18282 0.83102 0.91318 1.02364 1.21016 0.94129 0.97193 1.07168 1.20786 0.94141 0.97233 1.02343 1.20853 0.99609 0.91902 1.01087 1.21208 0.91368 1.00642 1.06084 1.18370 0.89331 0.85767 0.99957 1.86317 1.34330 1.13115 1.86853 1.24947 0.97956 0.79113 0.99449 1.24267 1.02466 0.90496 0.94922 1.68615 1.31879 1.10746 1.08597 1.20226 0.89412 0.92881 0.93856 1.21117 0.96208 1.27273 1.10358 0.91905 1.24992 0.94823 0.96680 0.98034 1.69968 1.06258 1.38345 1.39041 0.86425 0.79528 0.79292 0.82098 1.19641 1.20926 1.21028 1.24135 0.97905 0.90653 0.99331 0.90590 0.91328 0.91441 0.92365 0.92310 0.85207 0.85927 0.85733 0.84344 0.88193 0.90406 0.89944 0.94702 0.98027 0.92889 0.89438 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.15 0.38 -0.90 16 2 C 0.05 0.53 5.46 37.15 0.20 0.74 16 3 O -0.30 -4.41 9.92 -34.23 -0.34 -4.75 16 4 C 0.09 1.36 6.70 -39.12 -0.26 1.10 16 5 C -0.18 -2.00 9.04 -39.46 -0.36 -2.35 16 6 C -0.13 -1.32 10.04 -39.58 -0.40 -1.71 16 7 C -0.12 -1.29 10.04 -39.58 -0.40 -1.69 16 8 C -0.17 -2.31 9.01 -39.46 -0.36 -2.67 16 9 C 0.11 1.75 6.69 -39.12 -0.26 1.48 16 10 O -0.29 -5.21 9.94 -34.24 -0.34 -5.55 16 11 C 0.04 0.71 3.78 -25.80 -0.10 0.61 16 12 C 0.01 0.15 7.32 -2.63 -0.02 0.13 16 13 N -0.47 -10.50 6.25 -239.74 -1.50 -11.99 16 14 C 0.16 4.33 4.58 -4.98 -0.02 4.31 16 15 C -0.51 -14.64 8.84 -34.44 -0.30 -14.95 16 16 H 0.06 1.78 7.80 -52.48 -0.41 1.37 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 19 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 C 0.01 0.16 7.81 -2.76 -0.02 0.14 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 28 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 30 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.14 1.71 5.97 -52.49 -0.31 1.40 16 33 H 0.10 1.48 6.11 -51.93 -0.32 1.16 16 34 H 0.08 1.69 7.79 -51.93 -0.40 1.29 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.00 0.05 7.70 -51.93 -0.40 -0.35 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.07 1.46 7.79 -51.93 -0.40 1.05 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -32.27 333.37 -9.34 -41.61 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.89 Total: -0.71 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.01 Total: -14.23 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.76 Total: -38.25 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.68 Total: -10.30 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.27 -9.34 -41.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225213112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.264 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds