Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42897 * 109.47362 * 2 1 4 4 C 1.35995 * 117.00621 * 179.97438 * 3 2 1 5 5 C 1.38566 * 120.06833 * 359.95536 * 4 3 2 6 6 C 1.38244 * 119.99624 * 180.02562 * 5 4 3 7 7 C 1.38248 * 120.14857 * 0.02562 * 6 5 4 8 8 C 1.38242 * 120.14773 * 0.02562 * 7 6 5 9 9 C 1.38570 * 119.99566 * 359.97438 * 8 7 6 10 10 O 1.36000 * 120.07053 * 180.02562 * 9 8 7 11 11 C 1.42900 * 117.00085 * 6.19694 * 10 9 8 12 12 C 1.53931 * 113.73838 * 255.85521 * 11 10 9 13 13 N 1.48189 * 86.10457 * 221.95853 * 12 11 10 14 14 C 1.46895 * 111.07406 * 137.51841 * 13 12 11 15 15 C 1.50702 * 109.47197 * 70.56561 * 14 13 12 16 16 H 1.08006 * 119.99545 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00176 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00143 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47213 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46976 * 120.00149 * 19 17 15 22 22 H 1.48501 * 109.47527 * 240.00489 * 19 17 15 23 23 C 1.47966 * 90.79683 * 24.59637 * 13 12 11 24 24 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47496 * 299.99851 * 1 2 3 26 26 H 1.09002 * 109.47018 * 60.00674 * 1 2 3 27 27 H 1.08999 * 109.47504 * 239.99437 * 2 1 3 28 28 H 1.09005 * 109.47452 * 119.99560 * 2 1 3 29 29 H 1.07994 * 120.00260 * 0.04866 * 5 4 3 30 30 H 1.08003 * 119.92383 * 180.27320 * 6 5 4 31 31 H 1.07997 * 119.92873 * 180.02562 * 7 6 5 32 32 H 1.07996 * 120.00330 * 179.97438 * 8 7 6 33 33 H 1.09004 * 112.93771 * 27.42506 * 11 10 9 34 34 H 1.08999 * 113.75704 * 336.23860 * 12 11 10 35 35 H 1.09000 * 113.75847 * 107.60087 * 12 11 10 36 36 H 1.08998 * 109.47138 * 190.57062 * 14 13 12 37 37 H 1.09005 * 109.47005 * 310.56847 * 14 13 12 38 38 H 0.96993 * 119.99900 * 180.02562 * 18 17 15 39 39 H 1.08998 * 113.75583 * 221.08799 * 23 13 12 40 40 H 1.09001 * 113.75697 * 89.72369 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4277 0.0020 6 6 5.5703 0.6106 0.0031 7 6 6.1003 1.8875 0.0033 8 6 5.2624 2.9870 0.0029 9 6 3.8880 2.8106 0.0018 10 8 3.0623 3.8913 0.0009 11 6 3.6743 5.1753 -0.1363 12 6 3.7460 5.9713 1.1792 13 7 3.3503 7.1485 0.3707 14 6 2.3464 7.9586 1.0733 15 6 2.9915 8.6525 2.2453 16 1 4.0421 8.5059 2.4480 17 6 2.2405 9.4743 3.0585 18 7 0.9609 9.6524 2.8119 19 14 3.0399 10.3338 4.5116 20 1 4.4785 9.9703 4.5715 21 1 2.9076 11.8042 4.3509 22 1 2.3694 9.9107 5.7672 23 6 2.7133 6.2696 -0.6349 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7885 -0.5708 0.0019 30 1 6.2282 -0.2459 -0.0002 31 1 7.1713 2.0263 0.0037 32 1 5.6790 3.9834 0.0034 33 1 4.6186 5.1399 -0.6797 34 1 2.9989 5.6725 1.9146 35 1 4.7507 6.0411 1.5961 36 1 1.9375 8.7031 0.3903 37 1 1.5437 7.3132 1.4301 38 1 0.4327 10.2309 3.3838 39 1 2.8944 6.5773 -1.6647 40 1 1.6635 6.0582 -0.4313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225213112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -33.102389 kcal Electronic energy + Delta-G solvation = -21089.553945 eV Core-core repulsion = 17870.500176 eV Total energy + Delta-G solvation = -3219.053769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74464 -40.67935 -38.88959 -37.55202 -35.02471 -32.79595 -31.38992 -31.14331 -29.93673 -27.49704 -26.87137 -25.15920 -23.88209 -23.16737 -22.31390 -20.76825 -19.80931 -18.70455 -18.35339 -17.40769 -17.14858 -16.73770 -16.48005 -16.14302 -15.85291 -15.72430 -15.16496 -14.93444 -14.44483 -14.15417 -13.89246 -13.68305 -13.65693 -13.39227 -13.27112 -12.90191 -12.78307 -12.73795 -12.55799 -12.37556 -12.12229 -11.84042 -11.64315 -11.55405 -11.50112 -11.19639 -10.69298 -9.75625 -9.68003 -8.78591 -8.26851 -6.38315 0.33014 0.48902 1.38531 1.39313 1.53274 2.14819 2.29692 2.37666 2.78152 3.06073 3.14651 3.38362 3.78787 3.87371 3.96164 4.05873 4.07240 4.21400 4.28333 4.34928 4.43846 4.47205 4.52650 4.60959 4.67976 4.72054 4.82353 4.87219 4.88285 4.92429 5.06798 5.18781 5.29022 5.37970 5.44884 5.56393 5.69964 5.81105 6.02164 6.19070 6.28358 6.68192 6.76108 7.31775 8.85563 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020547 B = 0.003758 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.417177 B = 7449.510790 C = 8057.500249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.338 6.338 4 C 0.074 3.926 5 C -0.174 4.174 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.179 4.179 9 C 0.068 3.932 10 O -0.318 6.318 11 C 0.070 3.930 12 C 0.003 3.997 13 N -0.481 5.481 14 C 0.177 3.823 15 C -0.531 4.531 16 H 0.063 0.937 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.277 1.277 23 C 0.005 3.995 24 H 0.106 0.894 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.008 0.992 37 H -0.029 1.029 38 H 0.266 0.734 39 H 0.114 0.886 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.757 -22.961 -7.007 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.253 6.253 4 C 0.029 3.971 5 C -0.192 4.192 6 C -0.134 4.134 7 C -0.136 4.136 8 C -0.198 4.198 9 C 0.023 3.977 10 O -0.232 6.232 11 C 0.013 3.987 12 C -0.126 4.126 13 N -0.205 5.205 14 C 0.050 3.950 15 C -0.569 4.569 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.203 1.203 23 C -0.124 4.124 24 H 0.125 0.875 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.175 0.825 30 H 0.177 0.823 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.026 0.974 37 H -0.012 1.012 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.701 -22.237 -7.130 24.589 hybrid contribution -0.863 0.361 1.082 1.430 sum 6.839 -21.876 -6.048 23.705 Atomic orbital electron populations 1.21812 0.92227 1.04133 1.02658 1.23059 0.96533 0.80857 1.02415 1.86178 1.18692 1.31221 1.89213 1.18635 0.83569 0.91802 1.03104 1.21385 0.94425 0.97495 1.05899 1.21280 0.94166 0.98218 0.99762 1.21250 1.00868 0.91533 0.99904 1.21380 0.90656 1.01814 1.05918 1.18801 0.90279 0.85514 1.03100 1.86258 1.35536 1.13627 1.87772 1.24593 0.98183 0.78952 0.96975 1.24260 1.02112 0.90342 0.95851 1.68502 1.30654 1.12012 1.09348 1.19875 0.89536 0.92285 0.93273 1.21425 0.96360 1.27827 1.11253 0.91846 1.25979 0.95329 0.97281 1.01106 1.70097 1.07835 1.39046 1.40417 0.85264 0.78844 0.78090 0.78007 1.18565 1.20037 1.20303 1.24206 0.97406 0.90993 0.99806 0.87536 0.92823 0.92372 0.90484 0.90936 0.82506 0.82306 0.82832 0.83940 0.85272 0.93227 0.88490 0.97371 1.01165 0.92503 0.86751 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.05 0.84 5.46 71.98 0.39 1.24 16 3 O -0.34 -9.94 9.92 -79.63 -0.79 -10.73 16 4 C 0.07 2.09 6.70 22.57 0.15 2.24 16 5 C -0.17 -3.47 9.04 22.35 0.20 -3.26 16 6 C -0.12 -1.96 10.04 22.27 0.22 -1.74 16 7 C -0.12 -2.22 10.04 22.27 0.22 -2.00 16 8 C -0.18 -4.47 9.01 22.35 0.20 -4.27 16 9 C 0.07 2.11 6.69 22.57 0.15 2.27 16 10 O -0.32 -11.66 9.94 -79.69 -0.79 -12.45 16 11 C 0.07 2.39 3.78 31.24 0.12 2.50 16 12 C 0.00 0.14 7.32 86.36 0.63 0.77 16 13 N -0.48 -21.98 6.25 -915.61 -5.72 -27.70 16 14 C 0.18 9.97 4.58 85.56 0.39 10.36 16 15 C -0.53 -31.23 8.84 25.60 0.23 -31.00 16 16 H 0.06 3.64 7.80 -2.91 -0.02 3.62 16 17 C 0.00 0.08 5.46 84.65 0.46 0.54 16 18 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 19 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C 0.00 0.18 7.81 86.41 0.67 0.85 16 24 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.10 7.67 -2.39 -0.02 1.08 16 28 H 0.07 1.10 7.66 -2.38 -0.02 1.08 16 29 H 0.16 2.16 6.30 -2.91 -0.02 2.14 16 30 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.14 3.28 5.97 -2.91 -0.02 3.27 16 33 H 0.13 3.65 6.11 -2.39 -0.01 3.63 16 34 H 0.05 2.30 7.79 -2.39 -0.02 2.28 16 35 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H -0.03 -1.80 7.70 -2.38 -0.02 -1.81 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.06 2.39 7.79 -2.39 -0.02 2.38 16 Total: -1.00 -73.00 333.37 0.82 -72.18 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 1.02 Total: 12.19 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.79 Total: -23.22 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -5.44 Total: -85.17 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -1.58 Total: -23.18 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -73.00 0.82 -72.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225213112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.080 kcal (2) G-P(sol) polarization free energy of solvation -73.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds