Wall clock time and date at job start Mon Mar 30 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47108 * 2 1 4 4 C 1.35974 * 116.99966 * 180.02562 * 3 2 1 5 5 C 1.38700 * 119.99905 * 179.97438 * 4 3 2 6 6 C 1.38133 * 120.00129 * 180.02562 * 5 4 3 7 7 C 1.38701 * 119.99901 * 359.95843 * 6 5 4 8 8 O 1.35983 * 120.00186 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00033 * 185.27563 * 8 7 6 10 10 H 1.09001 * 110.91746 * 38.64454 * 9 8 7 11 11 C 1.55154 * 111.00228 * 162.54469 * 9 8 7 12 12 C 1.54337 * 103.02024 * 153.38324 * 11 9 8 13 13 N 1.47018 * 107.26303 * 338.13683 * 12 11 9 14 14 C 1.36943 * 125.64639 * 178.84781 * 13 12 11 15 15 H 1.08003 * 119.99940 * 179.42222 * 14 13 12 16 16 C 1.38810 * 120.00036 * 359.69767 * 14 13 12 17 17 N 1.31614 * 120.00073 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99976 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46850 * 90.00123 * 18 16 14 20 20 H 1.48502 * 109.46973 * 210.00206 * 18 16 14 21 21 H 1.48504 * 109.46858 * 329.99810 * 18 16 14 22 22 C 1.47428 * 108.70590 * 358.59026 * 13 12 11 23 23 C 1.38703 * 119.99837 * 0.27135 * 7 6 5 24 24 C 1.38130 * 119.99936 * 359.52028 * 23 7 6 25 25 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00006 * 1 2 3 27 27 H 1.08992 * 109.47369 * 60.00038 * 1 2 3 28 28 H 1.08995 * 109.46996 * 239.99868 * 2 1 3 29 29 H 1.09006 * 109.47197 * 119.99439 * 2 1 3 30 30 H 1.07996 * 120.00275 * 359.97438 * 5 4 3 31 31 H 1.07994 * 120.00398 * 179.97438 * 6 5 4 32 32 H 1.09003 * 110.72415 * 271.94109 * 11 9 8 33 33 H 1.08997 * 110.72345 * 35.03684 * 11 9 8 34 34 H 1.09005 * 109.99084 * 218.66594 * 12 11 9 35 35 H 1.08995 * 109.78331 * 97.49745 * 12 11 9 36 36 H 0.96995 * 120.00553 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.36750 * 143.19154 * 22 13 12 38 38 H 1.08998 * 110.36383 * 265.40379 * 22 13 12 39 39 H 1.07997 * 119.99961 * 179.72515 * 23 7 6 40 40 H 1.07999 * 119.99870 * 180.25381 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 3.8845 2.8072 -0.0011 6 6 5.2539 2.9882 -0.0022 7 6 6.0988 1.8883 -0.0018 8 8 7.4470 2.0664 -0.0024 9 6 8.2562 0.8945 -0.1191 10 1 7.8133 0.1836 -0.8167 11 6 9.7044 1.2583 -0.5403 12 6 10.5372 0.0938 0.0362 13 7 9.7498 -0.5107 1.1206 14 6 10.1267 -1.5899 1.8747 15 1 9.4784 -1.9543 2.6579 16 6 11.3446 -2.2118 1.6364 17 7 12.1369 -1.7646 0.6853 18 14 11.8591 -3.6834 2.6655 19 1 11.3777 -4.9312 2.0203 20 1 13.3399 -3.7201 2.7711 21 1 11.2687 -3.5685 4.0233 22 6 8.4899 0.2410 1.2658 23 6 5.5687 0.6066 -0.0061 24 6 4.1993 0.4256 -0.0007 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.2267 3.6637 -0.0015 31 1 5.6667 3.9862 -0.0031 32 1 9.7920 1.2976 -1.6260 33 1 10.0088 2.2059 -0.0958 34 1 11.4818 0.4699 0.4292 35 1 10.7254 -0.6458 -0.7421 36 1 12.9881 -2.1989 0.5189 37 1 7.6705 -0.4353 1.5094 38 1 8.5912 1.0058 2.0358 39 1 6.2266 -0.2499 -0.0103 40 1 3.7865 -0.5724 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225256694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:54 Heat of formation + Delta-G solvation = -23.429885 kcal Electronic energy + Delta-G solvation = -21093.158506 eV Core-core repulsion = 17874.524168 eV Total energy + Delta-G solvation = -3218.634338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37353 -39.13865 -37.12916 -35.72841 -32.35479 -31.94597 -30.99294 -29.46500 -28.42575 -27.31216 -24.56706 -24.19967 -22.51350 -21.60001 -20.29143 -20.05899 -18.46301 -17.62016 -17.04441 -16.22157 -16.00851 -15.16073 -14.73052 -14.67572 -14.13706 -14.02703 -13.75963 -13.48580 -13.33965 -12.99889 -12.58406 -12.39519 -12.35634 -12.16154 -11.88648 -11.71734 -11.45839 -10.99047 -10.87223 -10.77402 -10.60479 -10.33737 -10.16286 -9.98079 -9.84299 -9.68982 -9.02721 -8.65500 -7.59816 -6.90863 -5.76590 -3.11270 1.30732 1.56074 3.12301 3.37467 3.42047 3.44430 3.53640 3.80922 4.46475 4.68988 4.69240 4.83226 4.92798 5.01569 5.18121 5.21714 5.28498 5.34918 5.44534 5.50742 5.52807 5.57198 5.62057 5.68996 5.76177 5.92078 6.05518 6.22076 6.33422 6.36340 6.41211 6.42550 6.57023 6.64164 6.73749 7.35964 7.48980 7.53491 7.72121 7.80411 8.18904 9.15583 9.75254 10.39924 11.35199 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.003666 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.126405 B = 7636.759600 C = 8611.544247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.082 3.918 5 C -0.114 4.114 6 C -0.120 4.120 7 C 0.107 3.893 8 O -0.306 6.306 9 C 0.066 3.934 10 H 0.078 0.922 11 C -0.135 4.135 12 C 0.178 3.822 13 N -0.603 5.603 14 C -0.231 4.231 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.118 3.882 23 C -0.167 4.167 24 C -0.166 4.166 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.254 0.746 37 H 0.042 0.958 38 H 0.030 0.970 39 H 0.137 0.863 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.400 6.083 -3.621 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.037 3.963 5 C -0.133 4.133 6 C -0.138 4.138 7 C 0.062 3.938 8 O -0.219 6.219 9 C 0.009 3.991 10 H 0.096 0.904 11 C -0.173 4.173 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.359 4.359 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C -0.009 4.009 23 C -0.186 4.186 24 C -0.185 4.185 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.155 0.845 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.241 6.251 -3.591 19.613 hybrid contribution 0.424 -1.327 0.525 1.489 sum -17.816 4.924 -3.066 18.737 Atomic orbital electron populations 1.21763 0.92954 1.02723 1.03365 1.22730 0.95645 0.82367 1.01384 1.86033 1.19086 1.28823 1.89561 1.18809 0.82157 0.94046 1.01267 1.20149 0.94058 0.94831 1.04256 1.20230 0.91220 0.97979 1.04394 1.18982 0.83783 0.93313 0.97759 1.86109 1.13317 1.34916 1.87592 1.23803 0.90894 0.85382 0.98980 0.90396 1.23010 0.92260 1.01466 1.00546 1.21208 0.92508 0.90398 0.90509 1.44350 1.15839 1.33429 1.39445 1.19063 1.01639 1.03775 1.11421 0.90324 1.24817 0.96874 0.99682 0.98941 1.69938 1.11592 1.42207 1.33192 0.86086 0.77668 0.82267 0.79542 1.21528 1.21581 1.20631 1.21982 0.90503 0.94671 0.93730 1.21283 0.95543 0.96956 1.04811 1.21033 0.93534 0.98044 1.05867 0.90505 0.91603 0.91631 0.92198 0.92131 0.84890 0.84638 0.91356 0.91138 0.93260 0.93032 0.93609 0.93990 0.95233 0.84530 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.49 5.46 37.16 0.20 0.69 16 3 O -0.32 -3.86 10.14 -19.66 -0.20 -4.06 16 4 C 0.08 1.07 6.69 -39.24 -0.26 0.81 16 5 C -0.11 -1.43 9.98 -39.45 -0.39 -1.83 16 6 C -0.12 -1.61 9.98 -39.45 -0.39 -2.01 16 7 C 0.11 1.69 6.63 -39.24 -0.26 1.43 16 8 O -0.31 -5.36 9.96 -19.69 -0.20 -5.55 16 9 C 0.07 1.23 2.82 -24.59 -0.07 1.16 16 10 H 0.08 1.40 6.61 -51.93 -0.34 1.06 16 11 C -0.13 -2.58 6.68 -24.89 -0.17 -2.75 16 12 C 0.18 4.32 5.38 -3.06 -0.02 4.30 16 13 N -0.60 -15.51 3.39 -170.06 -0.58 -16.09 16 14 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 15 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 18 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.12 2.53 6.59 -2.53 -0.02 2.51 16 23 C -0.17 -2.51 8.71 -39.45 -0.34 -2.85 16 24 C -0.17 -2.20 9.03 -39.45 -0.36 -2.56 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.05 1.31 7.52 -51.93 -0.39 0.92 16 35 H 0.05 1.35 7.37 -51.93 -0.38 0.97 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.04 0.87 7.24 -51.93 -0.38 0.49 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.14 2.11 5.30 -52.49 -0.28 1.83 16 40 H 0.13 1.42 6.29 -52.49 -0.33 1.09 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -30.67 325.44 -8.29 -38.96 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.82 Total: -0.20 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.94 Total: -8.62 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.00 Total: -42.37 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.40 Total: -9.61 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.67 -8.29 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225256694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.533 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds