Wall clock time and date at job start Mon Mar 30 2020 01:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36009 * 116.99819 * 2 1 4 4 C 1.38715 * 120.02308 * 0.02562 * 3 2 1 5 5 C 1.38768 * 120.53417 * 180.02562 * 4 3 2 6 6 C 1.36484 * 120.58811 * 359.97438 * 5 4 3 7 7 C 1.40771 * 120.01989 * 0.02562 * 6 5 4 8 8 C 1.41183 * 120.26457 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99555 * 153.88578 * 8 7 6 10 10 C 1.39913 * 119.99972 * 333.88806 * 8 7 6 11 11 N 1.30874 * 120.00209 * 343.55469 * 10 8 7 12 12 Si 1.86798 * 119.99950 * 163.55912 * 10 8 7 13 13 H 1.48502 * 109.47152 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47410 * 119.99853 * 12 10 8 15 15 H 1.48501 * 109.47190 * 239.99846 * 12 10 8 16 16 C 1.38874 * 120.02208 * 180.02562 * 3 2 1 17 17 O 1.35742 * 120.28265 * 0.02562 * 16 3 2 18 18 C 1.42896 * 117.00081 * 89.99919 * 17 16 3 19 19 H 1.08997 * 110.64575 * 330.69849 * 18 17 16 20 20 C 1.54597 * 110.72624 * 207.54835 * 18 17 16 21 21 C 1.53990 * 105.14322 * 219.68445 * 20 18 17 22 22 N 1.47906 * 107.05635 * 358.77436 * 21 20 18 23 23 C 1.46902 * 110.99607 * 145.84276 * 22 21 20 24 24 C 1.48729 * 105.94396 * 25.20261 * 22 21 20 25 25 H 1.08998 * 109.47187 * 299.99744 * 1 2 3 26 26 H 1.08999 * 109.47012 * 59.99694 * 1 2 3 27 27 H 1.08997 * 109.47149 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.73164 * 359.97438 * 4 3 2 29 29 H 1.08006 * 119.70766 * 179.72641 * 5 4 3 30 30 H 1.08002 * 119.99717 * 179.97438 * 6 5 4 31 31 H 0.97004 * 120.00092 * 179.97438 * 11 10 8 32 32 H 1.09001 * 110.30605 * 338.59960 * 20 18 17 33 33 H 1.09002 * 110.30793 * 100.66742 * 20 18 17 34 34 H 1.09002 * 109.91767 * 118.12770 * 21 20 18 35 35 H 1.09001 * 109.91922 * 239.41844 * 21 20 18 36 36 H 1.09006 * 109.47342 * 59.87875 * 23 22 21 37 37 H 1.09005 * 109.46684 * 179.87410 * 23 22 21 38 38 H 1.08998 * 109.47419 * 299.87071 * 23 22 21 39 39 H 1.08999 * 110.83738 * 202.57330 * 24 22 21 40 40 H 1.08998 * 110.58448 * 79.38308 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3755 0.0005 5 6 1.9103 3.6175 0.0000 6 6 3.2716 3.7151 -0.0005 7 6 4.0613 2.5498 -0.0011 8 6 5.4699 2.6447 -0.0011 9 1 6.0651 1.8429 0.4102 10 6 6.0947 3.7776 -0.5339 11 7 5.4243 4.5904 -1.3102 12 14 7.8857 4.1298 -0.1372 13 1 8.4133 3.0670 0.7557 14 1 8.6752 4.1575 -1.3948 15 1 7.9926 5.4454 0.5432 16 6 3.4332 1.2851 -0.0005 17 8 4.1786 0.1507 -0.0016 18 6 4.5343 -0.3907 -1.2753 19 1 3.7774 -0.1478 -2.0211 20 6 4.7391 -1.9202 -1.1818 21 6 5.9577 -2.2182 -2.0749 22 7 6.3914 -0.9312 -2.6606 23 6 7.8513 -0.8905 -2.8193 24 6 5.9268 0.1230 -1.7199 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2131 2.3143 0.0005 29 1 1.3094 4.5150 -0.0040 30 1 3.7433 4.6867 -0.0014 31 1 5.8574 5.3760 -1.6793 32 1 4.9444 -2.2121 -0.1519 33 1 3.8583 -2.4433 -1.5542 34 1 6.7625 -2.6433 -1.4751 35 1 5.6763 -2.9111 -2.8679 36 1 8.1681 -1.7002 -3.4767 37 1 8.1429 0.0657 -3.2539 38 1 8.3260 -1.0066 -1.8450 39 1 5.8385 1.0837 -2.2272 40 1 6.5998 0.1981 -0.8658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:28 Heat of formation + Delta-G solvation = -64.955279 kcal Electronic energy + Delta-G solvation = -22489.880285 eV Core-core repulsion = 19269.445271 eV Total energy + Delta-G solvation = -3220.435014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97056 -39.84344 -38.36195 -37.21305 -35.32652 -32.60496 -31.25490 -30.28906 -29.33900 -28.01040 -26.91536 -26.21246 -22.96386 -22.63455 -21.85864 -21.60676 -19.64028 -18.56268 -17.60360 -17.24485 -17.01777 -16.56587 -16.37014 -16.16088 -15.36563 -15.19336 -14.91039 -14.71905 -14.53157 -14.39222 -13.82094 -13.63194 -13.41734 -13.17740 -12.82891 -12.69267 -12.56043 -12.44191 -12.38750 -12.23772 -12.08420 -12.02217 -11.64999 -11.60140 -11.29949 -11.02076 -10.33741 -9.43347 -9.32984 -8.77792 -8.61136 -6.36914 0.79588 1.03872 1.35342 1.46288 1.49378 2.16291 2.60439 2.70549 2.88675 3.37372 3.71293 3.76955 3.83757 4.14390 4.28740 4.32896 4.46511 4.47337 4.52223 4.54217 4.54570 4.68383 4.75185 4.78199 4.90769 4.93540 4.95838 5.01103 5.06869 5.14322 5.22539 5.27626 5.33919 5.74336 5.82381 5.90648 6.03560 6.08868 6.11522 6.49527 6.66205 6.80590 6.89930 7.34907 8.26363 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.009880 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.147369 B = 2833.267268 C = 4985.689278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.337 6.337 3 C 0.128 3.872 4 C -0.316 4.316 5 C -0.077 4.077 6 C -0.204 4.204 7 C 0.101 3.899 8 C -0.454 4.454 9 H 0.073 0.927 10 C 0.043 3.957 11 N -0.809 5.809 12 Si 0.968 3.032 13 H -0.261 1.261 14 H -0.263 1.263 15 H -0.260 1.260 16 C -0.087 4.087 17 O -0.316 6.316 18 C 0.089 3.911 19 H 0.039 0.961 20 C -0.120 4.120 21 C 0.043 3.957 22 N -0.538 5.538 23 C 0.017 3.983 24 C 0.041 3.959 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.118 0.882 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.291 0.709 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.058 0.942 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -7.640 -1.502 7.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.252 6.252 3 C 0.083 3.917 4 C -0.336 4.336 5 C -0.095 4.095 6 C -0.223 4.223 7 C 0.097 3.903 8 C -0.482 4.482 9 H 0.091 0.909 10 C -0.174 4.174 11 N -0.434 5.434 12 Si 0.789 3.211 13 H -0.185 1.185 14 H -0.188 1.188 15 H -0.184 1.184 16 C -0.132 4.132 17 O -0.232 6.232 18 C 0.032 3.968 19 H 0.057 0.943 20 C -0.158 4.158 21 C -0.084 4.084 22 N -0.263 5.263 23 C -0.131 4.131 24 C -0.087 4.087 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.274 -7.652 -2.018 7.919 hybrid contribution 0.681 0.802 0.651 1.237 sum 0.407 -6.851 -1.367 6.998 Atomic orbital electron populations 1.23173 0.77751 1.04618 1.01470 1.86036 1.22523 1.27380 1.89230 1.19311 0.91181 0.84559 0.96687 1.20643 0.98879 0.91501 1.22566 1.20547 0.94514 0.96655 0.97811 1.20935 0.93154 0.98211 1.10017 1.17965 0.94489 0.89915 0.87883 1.19536 0.91482 1.02999 1.34182 0.90891 1.26652 1.04566 0.94217 0.91990 1.69886 1.40215 1.11749 1.21557 0.85349 0.76872 0.79441 0.79410 1.18504 1.18783 1.18435 1.18165 0.86052 0.86482 1.22545 1.85983 1.70618 1.39121 1.27475 1.23101 0.94236 0.93991 0.85506 0.94268 1.22431 0.99384 0.93047 1.00890 1.22893 0.96138 0.91947 0.97421 1.64713 1.13788 1.03472 1.44359 1.22557 0.86502 1.03280 1.00749 1.23474 0.96290 0.95007 0.93908 0.92563 0.92802 0.86397 0.85264 0.86243 0.87277 0.89838 0.90658 0.89552 0.92299 0.88252 0.88935 0.91961 0.95294 0.92392 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 9.81 113.37 1.11 1.83 16 2 O -0.34 -14.20 10.28 -79.75 -0.82 -15.02 16 3 C 0.13 6.12 6.69 22.54 0.15 6.27 16 4 C -0.32 -13.96 9.05 22.51 0.20 -13.76 16 5 C -0.08 -3.54 9.96 21.99 0.22 -3.33 16 6 C -0.20 -10.65 8.63 22.48 0.19 -10.46 16 7 C 0.10 5.51 5.57 -21.21 -0.12 5.39 16 8 C -0.45 -24.16 6.95 23.40 0.16 -23.99 16 9 H 0.07 3.95 6.71 -2.91 -0.02 3.93 16 10 C 0.04 2.10 5.15 85.24 0.44 2.54 16 11 N -0.81 -40.92 10.98 21.82 0.24 -40.68 16 12 Si 0.97 37.78 29.59 68.60 2.03 39.81 16 13 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 14 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 15 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 16 C -0.09 -4.58 5.66 23.15 0.13 -4.45 16 17 O -0.32 -15.83 8.92 -76.76 -0.68 -16.51 16 18 C 0.09 3.84 3.59 31.80 0.11 3.96 16 19 H 0.04 1.84 7.95 -2.39 -0.02 1.82 16 20 C -0.12 -3.96 6.70 31.47 0.21 -3.75 16 21 C 0.04 1.23 6.70 86.44 0.58 1.81 16 22 N -0.54 -18.22 5.55 -908.58 -5.04 -23.26 16 23 C 0.02 0.48 9.40 127.69 1.20 1.68 16 24 C 0.04 1.74 4.81 86.61 0.42 2.15 16 25 H 0.06 1.53 7.66 -2.39 -0.02 1.51 16 26 H 0.05 1.48 7.66 -2.39 -0.02 1.46 16 27 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.13 4.77 6.27 -2.91 -0.02 4.75 16 29 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.11 5.85 6.22 -2.91 -0.02 5.83 16 31 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 32 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.06 1.48 7.73 -2.39 -0.02 1.46 16 35 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.03 0.78 8.01 -2.39 -0.02 0.76 16 39 H 0.06 2.80 7.76 -2.39 -0.02 2.79 16 40 H 0.04 1.77 7.16 -2.39 -0.02 1.75 16 Total: -1.00 -62.20 323.57 1.77 -60.44 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 1.03 Total: 29.34 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 5.02 Total: -34.12 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -4.80 Total: -63.94 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.50 Total: -31.53 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -62.20 1.77 -60.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.518 kcal (2) G-P(sol) polarization free energy of solvation -62.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds